RNA id: XM_034307440.1


Basic Information

Item Value
RNA id XM_034307440.1
length 1895
RNA type mRNA
GC content 0.43
exon number 9
gene id prr5l
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18568613 ~ 18577366 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagtgtgagtgagtgtgcgcGCGCGCAGGCAGCTCAATTGTCCGAGATGCAGTAGCTGATTTTTGCTAGTAAACTTACTCATGTTTGCAGTTGTAAATAAATACTTCATTTAAAAGTTGAAGCAAAGTGCTTTAGCTGCATGAgatgctcctgctgctgctcttaCCCGTCGTTTTGTGCTGTGATGCTCTCAGCCTGAGAAGTGTGCGATGGGATCTTTTCGGCGCCCCCGCTTTATGAGCTCTCCAGTGCTGTCAGACCTGGCCCGCTTTCACGCCAGTTCACCATCTCTACAACTCTCCACTGCAAGTATTTGGAATAGTGTCCAATCTGCTGTCATCAAAGTATTTCAAGGAGGAGGGCTACAGACCAATGAGCTGTACAGTCTGAATGAAAGCATcagGTGGCTTCAAAGGACAGAATTGGGCTCCTTCATTACAGAATACTTTCAGGATCAGCTCTTGAACAAAGGCCTGGCACATATATTGGAGAAAATTCAGCTTCATGAGGAAGAAAACTGTCTCCAGGCTCTCTCTGAGATGTGGGTAACATTTTTCACAGAGATCCTGCCAACTCTTCAAGCCATATTCTATCCTGTGCAGGGTCAGGAGCTGACTGTGAGACAGATGGCTCTGCTGGGGTTTAGGGACCAGGTCTTGTTGAAGCTTTCTCTAGAGAACATGCTGCATACTGCCTCATACCCTCCTGCCATAGTACAGATGCTGCTCATACTGCAGggcATTCATGAGCCTAGTGGGCCTAGTAAAGAATACTACCTTCTAGAGCGACTAGTGGATATGGTGATTTCACCTTACCTGAGTAACTACATCTACATGAGCCACAGGGACTCCACTTCAGGGTGTCATTTGGAAAACTCCCGTTTAGAGCCTGCACCTCACTTTGGCCAGCCAGagatcacaatcacacactttgCTGCAGAATCGTTGCTGACGCCTCTTGTGGAGCAGGAAGGCGAGGCATATCTGGAGAGGACTGGTGGAATACGGCGCCACACTGTCGCCAATGTTCATTCAGACATCCAGCTTCTCTCCATGACAAACAGAACTGATGGTGGTGATAATGGCCAGGTGACAAAAGCAAAGAGGACTGCTTCTCCCAGGCCTTTCTCCAGTCAACTGGTAATCCTGGACTCTCAGTCAACTACaacaaaatcataaatatgCCAGAACACTGCAGAGATGAACTGAAAACTGTTTGCTGATGGATTATGGAGTATGCTTTTGAGCAAAAGCCGATACTATCTACTGATTACTCACAGTATGAGCACTAAGAGGCAGTGCATGACAAAAGTCAACATGTTGCAGTCTGGACAAGTAAGAATCATAATTTACCCCAACCCTACAACTGTTGTTAGTTCAGGcatttacattaaatacattagtGGAATCATATGGATTATCACAGCAGCTGAAGTACAGTATGGGCCAATCTGACTGTGTAAGCAGATGCTTACATAGAAACTACATTATTATTTGGTTGAACGTTAAAAGCATGAGGAagaggagtttaaaaaaaactataattaGCTGAGTCGTGTCCTGTTCTGTGCTCTTAAGAGGCATGCTCTTTTTCTGCTGTAGAAGTGGCAAAGCTATGTGGAATTTCACCTCTGCTGAGCTAACACTGTTTACACAGATGCAGTATAAGGCAAAATCTTTCTGAGCTTTCAGCTGTTTGGGATTATGGACTTGATTACACTGTGTGACACTTTTGAGCCTTTTTAGTACTGTATAGTTTGTTTGTAGTGGAGTACAGGTCTATAGAgtaatttatttcatgaaatattttagaGTCTTAATTATAATTTCAATTTGAATGTTAAGACAAATATTGTGTGCATCAATGTGCAGTGTTGTATACATTTGTAGTAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178803 lncRNA upstream 16949 18551893 ~ 18552137 (+) True G150958
TU178799 lncRNA upstream 31231 18537261 ~ 18537855 (+) True G150954
TU178797 lncRNA upstream 38378 18530139 ~ 18530708 (+) True G150952
TU178775 lncRNA upstream 125034 18425317 ~ 18444052 (+) False G150932
XR_004578835.1 lncRNA downstream 24174 18601539 ~ 18620821 (+) True LOC113530068
XR_004578836.1 lncRNA downstream 24203 18601568 ~ 18620820 (+) False LOC113530068
XR_004578834.1 lncRNA downstream 24779 18602144 ~ 18620821 (+) False LOC113530068
XR_004578837.1 lncRNA downstream 24780 18602145 ~ 18620821 (+) False LOC113530068
TU178948 lncRNA downstream 170462 18747827 ~ 18796239 (+) False nfat5a
XM_026919196.2 mRNA upstream 65095 18491745 ~ 18503991 (+) True brd1b
XM_026919195.2 mRNA upstream 65211 18491748 ~ 18503875 (+) False brd1b
XM_026919197.2 mRNA upstream 78155 18487484 ~ 18490931 (+) True pim3
XM_026920066.2 mRNA upstream 193722 18368046 ~ 18375364 (+) True pkmb
XM_026919597.2 mRNA upstream 251361 18306242 ~ 18317725 (+) False LOC113529962
XM_026919459.2 mRNA downstream 1746 18579111 ~ 18586692 (+) True api5
XM_034307277.1 mRNA downstream 44823 18622188 ~ 18634768 (+) True hsd17b12a
XM_034307276.1 mRNA downstream 59324 18636689 ~ 18645706 (+) False alkbh3
XM_026919132.2 mRNA downstream 59324 18636689 ~ 18645706 (+) False alkbh3
XM_026919133.2 mRNA downstream 59409 18636774 ~ 18645706 (+) False alkbh3
TU178368 other upstream 726551 17834237 ~ 17842535 (+) True G150589
TU178369 other upstream 726551 17834237 ~ 17842535 (+) False G150589
TU178370 other upstream 726551 17834237 ~ 17842535 (+) False G150589
trnav-aac_18 other upstream 2527839 16041175 ~ 16041247 (+) True trnav-aac_18
XR_003403067.2 other upstream 2749513 15807990 ~ 15819573 (+) False LOC113529564
XR_004578809.1 other downstream 97645 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 144230 18721595 ~ 18724686 (+) True urahb
XR_004578793.1 other downstream 499230 19076595 ~ 19077868 (+) True LOC117598072
TU179056 other downstream 543799 19121164 ~ 19125132 (+) False faap24
TU179313 other downstream 683259 19260624 ~ 19263893 (+) True G151401

Expression Profile