RNA id: XM_026919503.2


Basic Information

Item Value
RNA id XM_026919503.2
length 1307
RNA type mRNA
GC content 0.46
exon number 8
gene id iftap
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 14056421 ~ 14082827 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCGCCTTCTTTTCTTCGAAGCTGGAGTTTAGACGCATCACTACCCAGTGTGCATTGCGCAACGCGGTTGCCTGAGGAACGTACGCTCTTTGCAGGAAGGCACACTGCGACCCTGAAGGTGACGAACTCTTCGTGAGTGGGATGTAGAACAGTGCAGCGCAGGCCCGAGGCCATGCTGGTTTGGCGAGATGCCTGGTTTACAAGATGATTCAGGTGCCGTTCCTCAATCCATGATGGAAGCTCTTGAGTCGTTCTGTAGCTTACCAGAGCAGTCATATGAGCAGTTCCTGTCCACCTTCACACACCTGAGCACAGAGAACGTGACGGCTGGTTGTTTGAAGGTTCCTGAAGAAGAAAACAATACCTGTCTTGTAGAGCTGGACAGAAGAGACGGCGTGAACATGGACAGAAAGGTTGACACAGAGGAAGAGACTGAAGACTTGCATAACACAAAAGATGCGTGTGTGCTTCCTGGAGAGGTTGAGGAAGATTTGCCGTTATACACTCCTGCTTTCTGTCACCTCACACAGCTTGAGCTCTCGTCTACTGACATGGACCCTAGGACACACACTCCACCAAGCAGCACAGAGAGCCAGAGCGAAACTGAGGAGGTTGTGCCTTTCAGTCTGGATGACACCTTCGATTATGACAATGTTGCGCTGTCTCACAAGTATCCTGTCATATCTAGCAACTGTGGATCATCATGACCTCCCCATGGATGCAGACTCCATGACTCCTACAGCGAGAACCACTGGCAGCTGTTCTGGCTCTGCTGTTTGCATGAGAAACCTCTGTGGCTGGCGTACAGGGACACAATCTGTCACTCAACCTTAGCTTtaagacaaagagaaaattaGAGTGTGCCCTTGCTATCTAGTCttgagacagagtgaaagaacCTTGGAGTGCTAATTGTGATGGGAAGTCAATGTCTTCAAAAGTGAGGCATATTTTATCTCAACACCTGACAAGAAGGATATATTTTCAAGAATGCAACATTTATCTTTCCCTGGTTTTTTGGGGAGTCATAAAGTAAGCAGTCAATTTGACAGGCGGGTAGGAAACAGCATTGTTTAAAGCAGTACAACCTTGTCAAACACTCTTCAGTGCTTTCCTCAAGACATTTGACAAGTGTCTCTTTTATTGTGGGAGAACATGGAAACATCACTCCATTGAGATTTGAAACCTCTGTATTTTGAACTGTGCAGTTTTCATGCCTGTGTACAAAATGAAATAACTAGGCCACTAAAGTTGCCATGTCACTAAGtacagtttaaataaaacatgaaaaggtTCTGTGgaaatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175712 lncRNA upstream 118 14054462 ~ 14056322 (+) True G148321
TU175318 lncRNA upstream 227109 13791156 ~ 13829331 (+) False fanci
TU175308 lncRNA upstream 306134 13748247 ~ 13750306 (+) True G147977
TU175134 lncRNA upstream 608639 13447435 ~ 13447801 (+) True G147821
TU175092 lncRNA upstream 610049 13443129 ~ 13446391 (+) True G147788
TU175720 lncRNA downstream 1507 14084334 ~ 14084563 (+) True G148326
TU175721 lncRNA downstream 2392 14085219 ~ 14085421 (+) True G148327
TU175875 lncRNA downstream 217190 14300017 ~ 14300236 (+) True G148459
TU175944 lncRNA downstream 419795 14502622 ~ 14502882 (+) True G148521
TU175974 lncRNA downstream 640524 14723351 ~ 14738350 (+) True G148551
XM_034307169.1 mRNA upstream 3006 14046856 ~ 14053434 (+) True rag1
XM_026918881.2 mRNA upstream 28818 14021971 ~ 14027622 (+) True si:ch211-256a21.4
XM_034307219.1 mRNA upstream 34559 14005432 ~ 14021881 (+) True accs
XM_034307214.1 mRNA upstream 144424 13891759 ~ 13912016 (+) True man2a2
XM_026918840.2 mRNA downstream 540468 14623295 ~ 14630439 (+) False ehf
XM_026918839.2 mRNA downstream 540468 14623295 ~ 14630438 (+) True ehf
XM_026919352.2 mRNA downstream 556633 14639460 ~ 14682317 (+) True pdhx
XM_026919383.2 mRNA downstream 610805 14693632 ~ 14709434 (+) True cd44b
XM_026918802.2 mRNA downstream 727081 14809908 ~ 14812706 (+) True fjx1
trnar-ucg_5 other upstream 235778 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_003403080.2 other upstream 281257 13761334 ~ 13775183 (+) False ces2b
TU175114 other upstream 703187 13349326 ~ 13353253 (+) False zgc:172145
TU174750 other upstream 1139186 12916919 ~ 12917254 (+) True G147542
XR_003403100.2 other upstream 2752494 11295128 ~ 11303946 (+) False hrh2a
XR_004578669.1 other downstream 1725163 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other downstream 1725163 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other downstream 1725163 15807990 ~ 15819573 (+) False LOC113529564
trnav-aac_18 other downstream 1958348 16041175 ~ 16041247 (+) True trnav-aac_18
TU178368 other downstream 3751410 17834237 ~ 17842535 (+) True G150589

Expression Profile