RNA id: XM_026919511.2


Basic Information

Item Value
RNA id XM_026919511.2
length 3527
RNA type mRNA
GC content 0.43
exon number 15
gene id slc13a1
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17934290 ~ 17942955 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAAGTCGCTTGATGTGATAGAGTCACGGAGTTTACACCGTTCAGCTCAATGATGAGGGCGTTTACTGGAGCAGTATGGAGCTTTCGCAGTCTGTTCATCATCATTCTCACACCACTATTAATGCTACCGCTTCCCCTAGTCATCAACACAAAGGTGGCTCAATGTGCCTATACGCTGGTGCTGATGGCAGTGTTCTGGATGACGGAGGCATTGCCTCTGTCTGTGACGGCCCTTCTTCCAGCactcctctttcctctcttcGGCATTATGAAATCCTCAGCGGTTGCAACAATGTATTTTAAAGATTTCCACTTACTCCTGCTTGGAGTCATCTGTCTCGCAACCTCGATTGAGAAGTGGGGTCTGCACCGGCGAATTGCTCTCAGGCTGGTCACTATGGTTGGAGTAAACCCTGGCATGTTGATGCTGGGCTTCATGGTAGGCTGTGCTTTCCTCTCCATGTGGCTGAGTAACACCTCCACAGTGGCCATGGTGATGCCGATAGCAGAGGCCGTGATGCAGCAGGTCATGAGTGCAGAGGGCCAGGTCAGCAGCCAGCAGGATAGACAGCAGCCAGCACTGAAAGGCATCTGCAATCTTGCGCTCCAGCTGGAAGGAGATGCTGAGAAACAGTGTGAAAAAGCCAAGGATGAGAAAAGCACAGAGGCAGTGATTAAGGAAGTTTTTATTACTGTCCCCGAGGAGGATCATTCCACAGagGCTCTGCCAAGTTCTCCATTACACTCGAACTACAGAACACATCGAGATCAAATGATGTGTAAAAGTTTGTCTCTGGCCATTGCCTACTCTGCAAACATCGGTGGTCTGGCAACTCTGCCTGGAACATCTTCAAATCTTATCTTTGCTGAATATATGCATCAATTTTACCCAGAATGCAAGTCCATCAATTTTGGAAACTGGTTTAttttctgtctgcctgtctgcatTATTGTCCTGTGTTTGGCTTGGATATGGATGCATTGGCTGTTTTTGGGCACTAATTTCTGCTCCTCACTGTCCTCCCGAAGGGGTCctactgagagagagattgcaGCAGGCAAGCATATCAAAGATCAATACAATGCACTGGGGAgcatgagcCGACAGGAGATGATCACTCTTGTTATTTTCATGCTGATGGCAGTGCTGTGGTTTGTGAGAGAGCCAGGCTTCATGCCAGGTTGGGCATCTCTGTTTCCTGACTATCCAGGATATGCAACTGATGCCACTGTCGCTCTCCTTCTGGGCATGTTGTTCTTCATCATCCCTGCTAAGAGGCCCACTGGAGATAACTATGATACTATGATATCATGGAAGGAATTCCAAGCCTGTATGCCGTGGGAGATCTGTCTACTCGTGGGAGGGGGTTTTGCACTAGCAGAGGGCACCAAGGTATCTGGTTTATCCACTTGGGTTGCAGAACTGATGACTCCATTGGGGAATCTCCCTGTATTGGTCATTGTCACTATTGCCTGTCTGATTGTCACGTCCATTACAGAAGTGGCTAGTAATCCAGCCACCATCACCATCTTCCTGCCCATACTTGCTCCACTGGCTGAAGCCATCAACGTCAACCCCCTCTACATGCTGATACCAGCAACTCTTAGTGTGTCATTCTCCTTCTTGCTTCCTGTTTCCAATCCTCCAAATGCCATTGTCTTTGCATATGGGCATGTAAAAATCATGGATATGGTCAAAGCAGGACTGGGCTTGAATGTCATTGGTGTTCTTTCGGTGCTGTTGGCTATCAGTACTTGGGGAAGACCAATCTTTGTTCTGGATACTTATCCAGACTGGGCTCCTACCTTTGGCACGACAAACACAACTGGGTTCTAAACTGCTACAGTTTACTGCAGTGTCTAATGTAAATAAGGATGAAAAGCATACAGTATCTTTGTATCTTGGTTAATGTGCTCCATTTCTCCCTATTCTGTGGGTAGTAAATGTAAAAGGGCGCtatttatataactataattCAACAGTGAAAGTATCCATATTTTGTAACAGTGTTCCATAAGTACTCGGAAGAGGTTTGTGTATGAGCTGAATGGGTGTTGTATAGATATTTTGTATTGGAGATACTTTAATAACTACTTCTAAAAGTActaactttatatttataagcaCCTTTTATTAGCACCTTTTATATGTAGCTCATATCTTTACAAAGTGATATACAAGTACTCATTTAAATCCATAGAATTGCTgttcaaatgaatgaataaaaagggGACACATCTAAAAGTAGAAATTCGGGGTTCACTAGAAAGTCTAGATAAGGTAAAATAAAAAGGCAGGGGTCAGATTTTAGTCTCACTTGTTTTGATCTAAAATTCCAAATTTTTGAGAGCGCTCCAAGGAGCTGCTAACCGctaattataaatgatttacaGCAAAATCCCCTAGGCTGAGTGAACTcttacattgtttaaaaaaaacaaacaaaaaaataactagAGGATTCATTTGTGTCCATCTGGCCTTATATGAGAAAAACCACTTTTGTTACTTTaacactggggattttgctgtgtTACCTTCACATATAGAACTGGGTCCCTGGTGATCTAGCAGCTAAGGATCCCGCGCTCTCACTGCCGAGGCCCGGGTTCGATTTccaggcagggaaccaacccagccactggtagcgtactctcagtgctggtcccaagcccggataagggagggttgcgtcaggaaggacATAAAACCTgagccaaatcaaacatgcagaccattgatctgctgtggcgacccctaatgggagcagctgaaagaagaagaagaacaacaacaacaacaacaaccttcATGTATAGAACTATATCAGAAAAACTACATCAGTttcaaaatgaatttaaaaatagtGTCTATACACTCAACTGCAGGATTTTCATTCCAAAAGAACATCAACTGAAATGATTCCTGTAAGCATTCACGtagtttttgttaaatatacacttgtctttattaaaaatggaaggCAAATTGGAGATTTGTTGCAGATTTATTGTGTATAGTGATCTAGAAACATTTATAGTGAGCATTGTACTTTAGCTAACTGAACTTTGATGACAGATTACTTTGCCTGGGCATGTATGGAACAAGTATGTTGTatcattttaaaagttatttgtGCCAGTTTATTGGACTCCAAACTGATAATGTTTTAAAGTTTACTTgaatatttgcatacaaatgtacTGCAGCGTTATTTCTGATCtacattattgtacattttttatactGACGTCTCAGCCTGTTGGGACTCCTACCAGGAAaaacagaaggagaaggaaggaaggaaggaaggaaggaaaaggaaggaagggatGTAATATCTTGATTACATAATAAATCTATGATAGACAGGCTCACATGGACATCCCAAAAAGGTGTAATCACTAAGTGCGACTAGAATTTAGCCAATGACTTGATTAAATGTCTCATGTTGTCCTGATGTTCTGATGTCACTGTGAAATATTCCACtgtctactactactacttagtAACAGTTAATGTACCA

Function

GO:

id name namespace
GO:0008272 sulfate transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0015382 sodium molecular_function

KEGG:

id description
K14444 SLC13A1_4; solute carrier family 13 (sodium/sulfate cotransporter), member 1/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178394 lncRNA upstream 19048 17914625 ~ 17915242 (+) True G150609
TU178374 lncRNA upstream 21707 17911637 ~ 17912583 (+) True G150592
TU178372 lncRNA upstream 93841 17832766 ~ 17840449 (+) True G150590
TU178163 lncRNA upstream 231532 17702554 ~ 17702758 (+) True G150407
TU178012 lncRNA upstream 477155 17456920 ~ 17457135 (+) True G150268
XR_004578772.1 lncRNA downstream 187891 18130846 ~ 18139145 (+) True LOC117598020
TU178595 lncRNA downstream 239600 18182555 ~ 18184010 (+) True tmem17
TU178695 lncRNA downstream 399288 18342243 ~ 18345729 (+) True G150873
TU178734 lncRNA downstream 423927 18366882 ~ 18367108 (+) True G150900
TU178777 lncRNA downstream 480603 18423558 ~ 18424220 (+) True G150933
XM_026919510.2 mRNA upstream 3144 17921555 ~ 17931146 (+) True iqub
XM_026919222.2 mRNA upstream 23429 17890887 ~ 17910861 (+) True wasla
XM_026919317.2 mRNA upstream 122326 17806125 ~ 17811964 (+) True gpr37a
XM_026919315.2 mRNA upstream 130492 17760351 ~ 17803798 (+) False pot1
XM_034307324.1 mRNA downstream 6336 17949291 ~ 18079622 (+) True cadps2
XM_034307325.1 mRNA downstream 6336 17949291 ~ 18079622 (+) False cadps2
XM_026919048.2 mRNA downstream 6337 17949292 ~ 18079622 (+) False cadps2
XM_034307326.1 mRNA downstream 6337 17949292 ~ 18079622 (+) False cadps2
XM_026919049.2 mRNA downstream 6337 17949292 ~ 18079622 (+) False cadps2
TU178368 other upstream 91755 17834237 ~ 17842535 (+) True G150589
TU178369 other upstream 91755 17834237 ~ 17842535 (+) False G150589
TU178370 other upstream 91755 17834237 ~ 17842535 (+) False G150589
trnav-aac_18 other upstream 1893043 16041175 ~ 16041247 (+) True trnav-aac_18
XR_003403067.2 other upstream 2114717 15807990 ~ 15819573 (+) False LOC113529564
XR_004578809.1 other downstream 732055 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 778640 18721595 ~ 18724686 (+) True urahb
XR_004578793.1 other downstream 1133640 19076595 ~ 19077868 (+) True LOC117598072
TU179056 other downstream 1178209 19121164 ~ 19125132 (+) False faap24
TU179313 other downstream 1317669 19260624 ~ 19263893 (+) True G151401

Expression Profile