Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026919512.2 |
| length | 1625 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 3 |
| gene id | myod1 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047603.1 |
| NCBI id | CM018549.1 |
| chromosome length | 29458963 |
| location | 13356233 ~ 13358154 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0048741 | skeletal muscle fiber development | biological_process |
| GO:0043282 | pharyngeal muscle development | biological_process |
| GO:0002074 | extraocular skeletal muscle development | biological_process |
| GO:0071392 | cellular response to estradiol stimulus | biological_process |
| GO:0043966 | histone H3 acetylation | biological_process |
| GO:0043967 | histone H4 acetylation | biological_process |
| GO:0035914 | skeletal muscle cell differentiation | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0005654 | nucleoplasm | cellular_component |
| GO:0031490 | chromatin DNA binding | molecular_function |
| GO:0046983 | protein dimerization activity | molecular_function |
| id | description |
|---|---|
| K09064 | MYOD1, MYF3; myogenic factor 3 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004578665.1 | lncRNA | upstream | 23189 | 13329642 ~ 13333044 (+) | True | LOC117597924 |
| TU174869 | lncRNA | upstream | 167949 | 13187691 ~ 13188284 (+) | True | G147641 |
| TU174857 | lncRNA | upstream | 191443 | 13164576 ~ 13164790 (+) | True | G147630 |
| TU174826 | lncRNA | upstream | 265728 | 13070255 ~ 13090505 (+) | True | G147602 |
| TU174771 | lncRNA | upstream | 339376 | 13014961 ~ 13016857 (+) | True | G147559 |
| TU175059 | lncRNA | downstream | 1881 | 13360035 ~ 13371776 (+) | True | G147784 |
| TU175060 | lncRNA | downstream | 1881 | 13360035 ~ 13371776 (+) | False | G147784 |
| TU175061 | lncRNA | downstream | 1881 | 13360035 ~ 13371776 (+) | False | G147784 |
| TU175083 | lncRNA | downstream | 14718 | 13372872 ~ 13389196 (+) | False | prr33 |
| TU175091 | lncRNA | downstream | 32163 | 13390317 ~ 13390708 (+) | True | G147787 |
| XM_026918818.2 | mRNA | upstream | 2971 | 13349323 ~ 13353262 (+) | True | zgc:172145 |
| XM_026919079.2 | mRNA | upstream | 140242 | 13170695 ~ 13215991 (+) | True | mob2a |
| XM_026919076.2 | mRNA | upstream | 140242 | 13189684 ~ 13215991 (+) | False | mob2a |
| XM_026919078.2 | mRNA | upstream | 140242 | 13192625 ~ 13215991 (+) | False | mob2a |
| XM_026919077.2 | mRNA | upstream | 140242 | 13205277 ~ 13215991 (+) | False | mob2a |
| XM_026919136.2 | mRNA | downstream | 14748 | 13372902 ~ 13381252 (+) | True | prr33 |
| XM_026919734.2 | mRNA | downstream | 107119 | 13465273 ~ 13470743 (+) | True | pdcd2l |
| XM_026919735.2 | mRNA | downstream | 107119 | 13465273 ~ 13470743 (+) | False | pdcd2l |
| XM_034307428.1 | mRNA | downstream | 115030 | 13473184 ~ 13522795 (+) | False | banp |
| XM_026919960.2 | mRNA | downstream | 115046 | 13473200 ~ 13522795 (+) | True | banp |
| TU175114 | other | upstream | 2980 | 13349326 ~ 13353253 (+) | False | zgc:172145 |
| TU174750 | other | upstream | 438979 | 12916919 ~ 12917254 (+) | True | G147542 |
| XR_004578672.1 | other | upstream | 2049915 | 11295128 ~ 11306318 (+) | False | hrh2a |
| XR_003403100.2 | other | upstream | 2052287 | 11295128 ~ 11303946 (+) | False | hrh2a |
| TU173183 | other | upstream | 2808441 | 10543875 ~ 10547792 (+) | False | si:ch73-233f7.1 |
| XR_003403080.2 | other | downstream | 403180 | 13761334 ~ 13775183 (+) | False | ces2b |
| trnar-ucg_5 | other | downstream | 462436 | 13820590 ~ 13820662 (+) | True | trnar-ucg_5 |
| XR_004578669.1 | other | downstream | 2449836 | 15807990 ~ 15822591 (+) | False | LOC113529564 |
| XR_004578670.1 | other | downstream | 2449836 | 15807990 ~ 15820156 (+) | False | LOC113529564 |
| XR_003403067.2 | other | downstream | 2449836 | 15807990 ~ 15819573 (+) | False | LOC113529564 |
