RNA id: XM_034307478.1


Basic Information

Item Value
RNA id XM_034307478.1
length 3154
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC113529940
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16093072 ~ 16106147 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtttcattcattccttcactgCTAAAATCATTAACGTTAATTCGTCCGGTTTACGAGCAGCATCGCACGTGCAGGTAAGGGGAGGCGGAAGTGGAGGGCGTGGCCAAAACACATCACCGGGGAAAGTCTTGCTGTGGTtcttcatgtaaatatttgcgGTCAGTTTGTAATAGACTGTTTATTTGCGGCTTGGAAACGAACAAATCTACACGCATCAGAATGTAATTCCCGTGAAACAGTGCTCTAGGACACAGTGTACTGTTTTCATAGCGAACACTAATGCATTTGTAAACCTTCTATTTTGTTGTGGATGTCGTTGAATGGACGGATTATGCTGTGTTTGAATATGGCGATCGGATAGCTGCTCTCTCTCAGAGGCCATTCGCATCAGCCTCACTGATCTAATGAGGCGTGAATAAGTTTGCCACTGGGAGCAAAAACAGAGCCGCCGAGTTGACAGTCCGTCCGGCTGTTGCTGGAGTGAAACTGATCCGCGTGTCCACGTGCTTTCTGTATTTCCATGTCATTTGCATATGGAAGCTCGACTCGCCTATCGCCCACGGCCGCCTCTACACACGAACCTTATTGGTCAGCTCGGGCTGTGGAGACGCGAATGGGAGAGCCCGGCGTGTTTGTGCCCGCCCCCGCAGACACGTTGCCTGGGGAGCAGTAACACGGGCCTCTCAGTCGCAGCTCCGCATCACGGAAAAGCACGAAGCTCAGCGACTCGCTGCTCGCCGTGTCCTGGATTTACCTCTGAAACAAAGGAAAGCGCACCATTCCCTGATATCCTCAAAAAGGCCTCTTCTCCTTTCCACAGGCCAGTAATGAAGCGGCCGAGGATGTCATCAGATTCAGACTATTCCATTGACTGGCTGGCCAGTGATGATGACGAGGACAATGACAGTGAGCTGGAGACTGAATGTGATCGAGAACTGGACACACTGCCCACCGCTCCTGCAGCTCAGAACAGCTGTGGCCCTcaaacctgcaggaaaagcagTGACATCTCAGTGAAGGGTAAGGAGGACAGGAGCTGCAGGAGCAGCCCCCCCTCCAGCCCAACCAGCTCTTTCAGCACTGGAGACAGGGAGCCTTCACCATCGGGACAGGAAGACATGTCTAGCCACAGCTGCACCCCGGGAAGCCCTAAAGGCAAAAGCAGACAGGCGCAGAAGAGAGCGCGGTGCCTGCCAGTGCCagagcaaaaagaaaagcagctcacAGCCAGCCCAACAGAGAAGGACAAGCTGTTTGCATGCAAGTGTGTGGAGTTGCAGTGCTATATTCACCCACTCTCCTCAATCCTGAATGGCCTTCGTTCTGGCAGATACAGAGAACGGCTCAGCACTTTCCAGGAGAGTGTAGCCATGGATCGGATCCAGAGAATAATGGGGGTCCTTCAGAATCCTTGCATGGGTGGACGGTATATTGACATCAtcctgaaaatggaggaaatgttGAAGACCTGGTTCCCTAACGTAAAACCCAGCCACCAAACCACTGCTGTGGAGCTGACACAAGAGACCGCACTGCTGAAAAAACCCAAGTTGTCCTCGGCTCCAGTCCCCATTTCTGCTGGTCTCTTCAACTCTGGCACTGCTGGTGCTTCTCCTGTGGCTGCTAAGGCCATACGGGTCAGTAACCTCATCCTTCCAGCACCTTACTCTGCCACCAATCTGAAATGGCTCCACACATCTCCCATCTGCTCACCCACTGCTGAGCAGGGCCAGCGCACAGTCCGGAACTTGCTAACAGCACGCAGGGACGAGGACGTGACACAGGACAACTCAGTTTCCTCCACTATAGACACCCCTGAACTTAACATGGACTCTGTGCCTAGTCAGCCGCCTCCAGGAAAGATCAGTGCCCCATGCCTGGAGAGACTACTGAAATCCACAGAGAGCATCATCAACCACAAAGCCCCCAGGGGGATGAGCAATATGGGCTCTGGCACCTTGTCCTAGTCCACAGAGACTGGGCTTTGGGTAATCAGAGCCTAAACAGCAGGCACTCATATTATCTCATGCCAGTGCACTCGAGCGCACCCCAGCGCAAGCCCCCTGCTTCATTTCAGCCTTCAGGGGACACACAAAGCATAGCTATGGCCAAGCCTAGCACCTAGACTGACATGGCcctcacatacacatgcatcaGCGTGTCACTGGTGTGGCAGTGCGTCCTCATCTAACTTGGGTTTGTCGGCTTTGAATCCTTTCGGGTGTATTACACTTTGTCTCCCAGATATGCCTGGTGAGACAGAGGACTGGTGGCTTGATGTGTAGAGGCAGCATATTGGTATCTGTGAATAAAGGAAAACATTACTTCAGAAAGGGATGGGAAAAGCAGGAGTAATGCATTTCTAGGGAACACTTCAGATATTCCAATGTGTCAGTGATCTCCATTGTAGTTGTACATAAAACATGTGGGATGAATGTGAATTttgcttctgtttatttttcatccGCTCCACTGGAGTCAGTTGATGTGACTGTTACTTCATAGGTATAAACTTCAAGCTAAGATTTTGGTACAACGGTTCTACCTCAATCTGACACAATGTCAATGGTTGTGTATAGAACGAATAAGAACTAATGTTCGCTGACATAGAATCAGAAAGAGGGAGCCTGCTAAGATCAAGGTGAGCCAGAATTGCCTGTAGTGCCGGGGTCTTGGGTATGAGCCTTTTTCTCTGCAAGGAAAAGCTCCACAGGCCTGATTGGTGCCAATGTATAGAATGTGAACtgcaaatttctttttttttttttttttttgatctttCTTTCAGTTAGCGTCTCCAAGTTTTAGGGCATCCAGTGCCTGTTTAATTTGATGTCAAGCTGTGCCTGTACACTGGTTTTGAAATGAATGagaaccacctggaatacctgCAACCTCTGAAGGATGGACTAGAGTGAATCAGTCAGGAACCGTCAAAACTCCTGGCATCAGATACATAGCTTAAATGTTTGCAGACTCTGTGGTCAAGTGGGACAGTGACATTTCTGTTTGCTACAGAGTAGATAATAGACTGAGAGGGAGCTATTCAGTTTTGTGTAAAAATTTGAGGTTGTTAATCTACCCTTGCAAAGTGGCCTTTACAGTGTGATATTTTATACTTTCTAAATAAATGTGGTTATATTTGTTTGGCGTA

Function

GO: NA

KEGG:

id description
K21599 CIART, CHRONO, GM129; circadian-associated transcriptional repressor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177011 lncRNA upstream 65053 16027607 ~ 16028019 (+) True G149428
TU177010 lncRNA upstream 66560 16024844 ~ 16026512 (+) True G149427
TU176828 lncRNA upstream 274704 15771838 ~ 15818368 (+) True G149276
TU176815 lncRNA upstream 338160 15754665 ~ 15754912 (+) True G149268
TU176798 lncRNA upstream 367981 15721348 ~ 15725091 (+) True svip
TU177169 lncRNA downstream 148537 16254684 ~ 16255314 (+) True G149552
TU177191 lncRNA downstream 222109 16328256 ~ 16328539 (+) True G149574
XR_004578685.1 lncRNA downstream 232443 16338590 ~ 16341963 (+) True LOC117597940
TU177372 lncRNA downstream 333559 16439706 ~ 16440054 (+) True G149722
TU177373 lncRNA downstream 339892 16446039 ~ 16449140 (+) True G149723
XM_026918890.2 mRNA upstream 26089 16061088 ~ 16066983 (+) True fbxl22
XM_026919968.2 mRNA upstream 32904 16049084 ~ 16060168 (+) False usp3
XM_026919969.2 mRNA upstream 32904 16049391 ~ 16060168 (+) True usp3
XM_026918866.2 mRNA upstream 44918 16045575 ~ 16048154 (+) True si:dkeyp-73b11.8
XM_026919794.2 mRNA upstream 78917 16009837 ~ 16014155 (+) True neil1
XM_026919736.2 mRNA downstream 64097 16170244 ~ 16174834 (+) True si:ch211-112g6.4
XM_026919649.2 mRNA downstream 96628 16202775 ~ 16206450 (+) True lrrc61
XM_026918916.2 mRNA downstream 103631 16209778 ~ 16219634 (+) False idh3a
XM_026918915.2 mRNA downstream 103681 16209828 ~ 16219634 (+) True idh3a
XM_026918914.2 mRNA downstream 125188 16231335 ~ 16235381 (+) True dnaja
trnav-aac_18 other upstream 51825 16041175 ~ 16041247 (+) True trnav-aac_18
XR_004578669.1 other upstream 270481 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other upstream 272916 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other upstream 273499 15807990 ~ 15819573 (+) False LOC113529564
trnar-ucg_5 other upstream 2272410 13820590 ~ 13820662 (+) True trnar-ucg_5
TU178368 other downstream 1728090 17834237 ~ 17842535 (+) True G150589
TU178369 other downstream 1728090 17834237 ~ 17842535 (+) False G150589
TU178370 other downstream 1728090 17834237 ~ 17842535 (+) False G150589
XR_004578809.1 other downstream 2568863 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 2615448 18721595 ~ 18724686 (+) True urahb

Expression Profile