RNA id: XM_034307359.1


Basic Information

Item Value
RNA id XM_034307359.1
length 2551
RNA type mRNA
GC content 0.42
exon number 12
gene id slc41a2a
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18245570 ~ 18254770 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGGGCGTGGCTACTCGAAACAGCGACTCTATCGAAACGGCCAGGTCACGTGAACGGAAGCGCCGTTACTTCACTTCGTTTCAAAAGTTTTGTTGCGCCTTCGTTCTAAAACGAGTTTGGGAGTGCTGCACCTCAGGGACCTGACAGTGGAAAGATCTGCTCTCACCCAACAGCAGTGTTGTGGCTTTGCTTAGAGGATGGATGATGGTCAAACAACTATTCAAAAGCGTTACATTAAAGCTTCTCctttactacacacatataaaacattaaaaaaatcttaggGCATATCATAATTTAAATGACTTCCTGGTAGGATAAAATTCTATACATGGGCACAACACAGTATAAGCAAGGTTAGTAACTTTAGCAAATTTAGCACATTTTGCAAAGTTTTATGAAGACCATGAATTCAGTTGGTGGTCCTAATCAGCATGAAGGAAAATGGACATCAGCTGATTTAGAGGTTAGAGATGATGAGAATCAGAATATTCCTTCTCTATGGTATGGAGGAATTGACAAATGCTTGGGTCTCACCAACAGTAACACTAGAAATATAGACAAGGGGTACTCTGAGTTGGACCCCTTGCTTCCTAATGATCATTCGTGGCCCTCAGTCCATGATGAGGAACAAGCGTCCACTGGTGCTCAGGCCATGCCGAGCGAATCATACTGTACCATGGTGCTTCAGATCCTGGCTCCATTCCTCCTGGCAGGCTTTGGTACAGTAATGGCTGGCATGCTGTTGGACATTGTGCAGCACTGGGACGTGTTTCAGAAAGTAACAGAGATCTTCATCCTGGTGCCGGCATTACTTGGCATGAAAGGCAACCTGGAGATGACACTGGCATCAAGACTCTCTACAGTGGTGAATGTTGGCAGAATTAACTCCTCAAAAGAGAAGTGGAAACTGATCATTGGAAATCTTGCCCTCAAGCAgGTTCAGGCTACAGTGCTGGGTTTCCTTGCAGCAGTGGCAGCCTCTGTACTTGGATATGTTCTGGATGAGAAATTGACCATAAATGGTACAGCAATGTTATGCTGCAGTGGTGTAGTGACAGCATTCATGGCATCGTTACTGCAAGGTATCATTATGGTGGGTGTGATTATTGGCTCAAAGAGGACCGGGATTAATCCTGACAACATAGCAGCACCAATTGCGGCTAGTTTTGGTGACCTCATCACTTTGGGGTTGCTTGCCATCATCAGTCAAAGGCTTTTCTCTTGCATtgaACTCTACCCCTATATTATCTACGTAGTGTGTGTCGTCTTTCTGTGCCTGACACCAGTCTGGGTAATAATTTCGTTTTGTCACTCTGAAAGCCACAAACTGCTGTACAATGGTTGGGAACCCATAATCACAGCCATGGTTATCAGCAGCATAGGTGGACTTATCCTGGACAAAACCATTACTGACTCAAACTTAGGAGGAGTAGTGGTTTACACCCCGGTGATAAATGGTGTTGGTGGTAACCTGGCTGCCATCCAGTCCAGCCGTATAGCCACGTATCTACATTTTCACTGCTCCCTGGGAAGGTTGCCTGAGGACGCAAAGTGCTGTTACTGTCCATTCCGAACCTTTTACGGCAAAgGATATAACAACAGAACAGCTCGGGTGCTGCTTCTTTTAGCCATTCCAGGCCATGTGgtctttctctttattatttatctaatgCAAGGTGCCAACACCAGCCCAACACCAACCTTCATCACCCTCTACTTGGTTGCAGCTCTAACACAGGTATTTATACTGTTGTGCATAGCTGACTGGATGGTTCACTGCTTGTGGAAGTATGGCCGAGACCCAGATAGCTTTTCTATCCCCTATTTGACAGCCTTGGGGGATCTACTGGGCACTGGCTTGTTAGctctttgtgtttttgctgtggGCGAATAATGACAATGGACACACTCTTGGATGAAATGGATTTACCAGGAAATTTACGGGCTATATcttaaactattatttattttcacataatttttaTTGTTACTAATTCTTTATCTTTGTTAGACTCTCCTCTTGTTCACTGGAGCTACTGAAGCATGAATACATATTTCCAAGCCATTGCTGAGACACCTCAGCCACTTTGTACAGCAATATTAATTACTTAGTAAGTCTTATGAGTGATACAAAGTTAAGGACATTTTTTATCATTCTATCAATATTATCAATTattatgttcatatttttttaacagtccATATACTTAAAATGTCTCTACTTTCCAACCCTTTCTAGAAGTCAAAAGTCAGCAAGTTGTAACATAAACGGAATGTAGCAAACTGAATCaatcatgctttttatttatgatgGGGACATACACACGTATGTGAAGCACCAAAAACAATTGCTGGCTGATTTTGACTGTCAGCACATAAATGATCAGAAAAGCTTACCTTTTTCCAGAACATGAGAAtgaaaaaatctttaaaatcatctttaaaggttctaaatctttaaagtttttaaagtttaaagaatCTGATAGGTCAAAAATATAACAGAATACAAACCCTGATTATACTCTGATTATATACTGATTACTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178595 lncRNA upstream 61560 18182555 ~ 18184010 (+) True tmem17
XR_004578772.1 lncRNA upstream 106425 18130846 ~ 18139145 (+) True LOC117598020
TU178394 lncRNA upstream 330328 17914625 ~ 17915242 (+) True G150609
TU178374 lncRNA upstream 332987 17911637 ~ 17912583 (+) True G150592
TU178372 lncRNA upstream 405121 17832766 ~ 17840449 (+) True G150590
TU178695 lncRNA downstream 87473 18342243 ~ 18345729 (+) True G150873
TU178734 lncRNA downstream 112112 18366882 ~ 18367108 (+) True G150900
TU178777 lncRNA downstream 168788 18423558 ~ 18424220 (+) True G150933
TU178775 lncRNA downstream 170547 18425317 ~ 18444052 (+) False G150932
TU178776 lncRNA downstream 170547 18425317 ~ 18444052 (+) True G150932
XM_026918631.2 mRNA upstream 17909 18214123 ~ 18227661 (+) False cnot2
XM_026918633.2 mRNA upstream 17909 18214123 ~ 18227661 (+) False cnot2
XM_026918634.2 mRNA upstream 17909 18219855 ~ 18227661 (+) True cnot2
XM_034307357.1 mRNA upstream 19755 18214123 ~ 18225815 (+) False cnot2
XM_026920019.2 mRNA upstream 61537 18182554 ~ 18184033 (+) False tmem17
XM_026919266.2 mRNA downstream 22141 18276911 ~ 18296702 (+) False si:ch211-106e7.2
XM_026919263.2 mRNA downstream 22141 18276911 ~ 18296697 (+) True si:ch211-106e7.2
XM_026920051.2 mRNA downstream 42824 18297594 ~ 18302925 (+) True amn1
XM_026919594.2 mRNA downstream 51471 18306241 ~ 18317725 (+) True LOC113529962
XM_026919596.2 mRNA downstream 51471 18306241 ~ 18317725 (+) False LOC113529962
TU178368 other upstream 403035 17834237 ~ 17842535 (+) True G150589
TU178369 other upstream 403035 17834237 ~ 17842535 (+) False G150589
TU178370 other upstream 403035 17834237 ~ 17842535 (+) False G150589
trnav-aac_18 other upstream 2204323 16041175 ~ 16041247 (+) True trnav-aac_18
XR_003403067.2 other upstream 2425997 15807990 ~ 15819573 (+) False LOC113529564
XR_004578809.1 other downstream 420240 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 466825 18721595 ~ 18724686 (+) True urahb
XR_004578793.1 other downstream 821825 19076595 ~ 19077868 (+) True LOC117598072
TU179056 other downstream 866394 19121164 ~ 19125132 (+) False faap24
TU179313 other downstream 1005854 19260624 ~ 19263893 (+) True G151401

Expression Profile