RNA id: XM_026919583.2


Basic Information

Item Value
RNA id XM_026919583.2
length 1738
RNA type mRNA
GC content 0.54
exon number 6
gene id isl2a
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17130857 ~ 17136035 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGGCTACAAGTTCTCGGTGTGCTCGGGCCGCTGCCCACTCCCACTGTGTCCCCTCATCTATAGCAGTGCGCGCTGACCATCCTTTATGCTGGATATTCTACTCCACTCTTCTTTCTTGGGTGATATGGGGGATCATTCAAAAAAGAAGACCGGGATCGCCATGTGTGTGGGCTGCGGAAGTCAGATCCATGACCAGTACATCCTGCGGGTCTCCCCGGACCTGGAGTGGCACGCGGCGTGTCTGAAGTGCGCGGAGTGCAGTCAGTACCTGGACGAGACGTGCACTTGCTTCGTCCGGGACGGCAAGACCTACTGCAAAAGAGACTACGTAAGGTTATTCGGGATTAAATGTGCGAAATGTAACGTGGGCTTCTGCAGCAGTGACCTGGTAATGCGGGCTCGGGACAACGTTTACCACATGGAGTGTTTCAGGTGCTCGGTGTGCAGCAGACACCTCCTGCCGGGAGATGAGTTCTCTCTGCGGGAAGAGGAGCTGCTGTGCCGGGCTGATCACGGGCTGCTGCTGGAGCGCTCCGCGGCGGGCAGCCCACCAATCAGCCCGggaaacacacactccaccagaGCCCTGCACATGGCCGAGCCGGTACCTGTGCGGCAGCCCCCACACCGCAACCACGTCCACAAGCAGTCGGAGAAGACGACCCGGGTGCGCACTGTGCTCAACGAGAAGCAGCTGCACACACTGCGCACATGCTACAACGCCAACCCGCGGCCCGACGCGCTCATGAAGGAGCAGCTGGTGGAGATGACGGGCCTCAGTCCGCGAGTTATCCGCGTCTGGTTCCAGAACAAACGCTGCAAGGACAAGAAGAGGTCCATGCTCATGAAGCaactccagcagcagcagcacagcgACAAAACCAATCTGCAAGGCCTAACAGGGACACCTCTAGTGGCAGGTAGTCCCATCCGGCATGATAACACGGTGCAGGGGAATCCTGTAGAAGTGCAGACGTACCAGCCTCCATGGAAAGCGCTGAGCGAGTTCGCGCTACAGAGTGACCTGGAGCAGCCCGCCTTCCAGCAGCTGGTGTCCTTCTCTGAGTCGGGCTCTCTGGGCACCTCCTCGGGCAGTGATGTGACTTCGCTGTCATCGCAGTTACCCGACACCCCCAACAGCATGGTGTCCAGTCCTGTGGAGACGTGATGGAGTCCAGCGACCTCTGTCCACCCCAGCATGCTGAACCCCACCCCGATCTGCATGAACACAGAGCACCTCACCACCTCCACCTGAGGAACACGACGGAATCACGGAAAACGACATACAGCAACACAGTGGATTTAACTCGGAACGCACAAGTCTGCCAAAACACACGGAGCCAAGCCCCAGGGACTCTCCACACGCGTTTACTCCAGGCGTCAAGACGCGAATCCACAGGGATCCGAGATCTTCCCGAGGAATATGAACAAGTTGACCCACTGTCAACAGCATAACAAATAACAATCATGTCGTTACCAGTATTCATTATGTAGTTTTATCAACACCTGATGACATTTCCCTAATTCAGTGAGACAACAGAGCCACGTTTGTCTTAATGCGCATGATCTCCGAAGACAGTGTATAAAAGTGACATGTAAACTATTTTATCTTTACGGATGGAGGACAAATTGTTTGAACTTCtcgagagaaaaaaagtaagttattgttatttattgtcAGGACAAGAGTCCAAGCGAGAATTAAGAAATGATCTTAATAAACTATGCTAAGTGTTG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048665 neuron fate specification biological_process
GO:0048675 axon extension biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K18492 ISL2; insulin gene enhancer protein ISL-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177389 lncRNA upstream 556985 16540599 ~ 16573872 (+) True G149729
XR_004578660.1 lncRNA upstream 656629 16460380 ~ 16474228 (+) True LOC117597920
TU177373 lncRNA upstream 681717 16446039 ~ 16449140 (+) True G149723
TU177372 lncRNA upstream 690803 16439706 ~ 16440054 (+) True G149722
XR_004578685.1 lncRNA upstream 788894 16338590 ~ 16341963 (+) True LOC117597940
TU177842 lncRNA downstream 100606 17236641 ~ 17236946 (+) True G150148
TU177846 lncRNA downstream 117632 17253667 ~ 17255337 (+) True G150152
TU178004 lncRNA downstream 294108 17430143 ~ 17434377 (+) True G150261
TU178009 lncRNA downstream 310214 17446249 ~ 17446460 (+) True G150265
TU178012 lncRNA downstream 320885 17456920 ~ 17457135 (+) True G150268
XM_034307203.1 mRNA upstream 17254 17061938 ~ 17113603 (+) False tmem266
XM_026918648.2 mRNA upstream 17254 17061939 ~ 17113603 (+) True tmem266
XM_026918649.2 mRNA upstream 17254 17061939 ~ 17113603 (+) False tmem266
XM_034307704.1 mRNA upstream 78646 17046001 ~ 17052211 (+) True lactb
XM_026918606.2 mRNA upstream 78646 17046002 ~ 17052211 (+) False lactb
XM_034307520.1 mRNA downstream 126398 17262433 ~ 17283926 (+) False atp8b4
XM_034307519.1 mRNA downstream 126421 17262456 ~ 17283926 (+) True atp8b4
XM_034307518.1 mRNA downstream 126421 17262456 ~ 17283926 (+) False atp8b4
XM_034307521.1 mRNA downstream 127783 17263818 ~ 17283926 (+) False atp8b4
XM_026918788.2 mRNA downstream 129115 17265150 ~ 17283926 (+) False atp8b4
trnav-aac_18 other upstream 1089610 16041175 ~ 16041247 (+) True trnav-aac_18
XR_004578669.1 other upstream 1308266 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other upstream 1310701 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other upstream 1311284 15807990 ~ 15819573 (+) False LOC113529564
trnar-ucg_5 other upstream 3310195 13820590 ~ 13820662 (+) True trnar-ucg_5
TU178368 other downstream 698202 17834237 ~ 17842535 (+) True G150589
TU178369 other downstream 698202 17834237 ~ 17842535 (+) False G150589
TU178370 other downstream 698202 17834237 ~ 17842535 (+) False G150589
XR_004578809.1 other downstream 1538975 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 1585560 18721595 ~ 18724686 (+) True urahb

Expression Profile