RNA id: XM_034307370.1


Basic Information

Item Value
RNA id XM_034307370.1
length 4295
RNA type mRNA
GC content 0.45
exon number 23
gene id LOC113529962
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18306241 ~ 18317725 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGACATATGTGCTGCTTTTGGCATGTGTGCATAATCTGTTTGATGTATACCAGTCATGTTGGATAAGTTAGTTTTACAATATTATCTGTGCATCAGCTGCTTTACTCAAACTCTCCTATCATTCATTCCTTGAGAACCATGAAGAAggaacacactgcaaaaatagaACTTTGTTAAGAACTTTGTTAAACTGAACTAAATGTACACTGTGGAAATTGTTGAGCATAACCTTTCCTTTACTTGCCTTTTGGTTCTGAGTGTAATCACACTCAGCCTAtcaaagagatttttaaaattctggtTATCACTTTCCTACActaaggaaaaaacaaacaatgtcatatgattttttttggaactTAACCATTTTAGAATATAAATTGCCTGACTAAAGTGACTAAATTTCAAACCCACATGAGTGTGTTTAGGGATTGGTGACACAGAGCTGGCACTTATGTGGCCTGCCAAACTGGTGAGCTGATCATTCATAGAGGAGGGaggctggacacacacacacacacacacacacacacacacagtgatctgTATGTGACCATCACCATGGAGACCTGCTATCAAGGCCACAGTTTCAACAGGCTGCTTGAAGAATAAACAGTGCGCAGAGACATAAGCGCTGATtgacagagaggaagaaaagagaagaccAGGAAAGCAACTGCATGGAGGATTACACCGTCCTCAGCTTTGagttgtgtgggtgtgtctcgATTAGATCACAGCTCCAAAATCAGCACCAGCTCCATTGGCGGTCAGTGTAGGATGAAACACAGTGAATCACCTGCCAGGCAAAGATGGAAGTCTGCCTCACGTCTTGCGCCAGACGGGGCCCCCAGATCCCATTCTGAGTTTGGGCTGCGAAGTGCGCTGGAAGAGGGCAGCATGAGGAGGACAGAACTCATCCAGAGGCTCCGGGAGGTCCACAGCCGTCTGGACACACAAACAGACCTGCTGAAAACCAAGGAGACCCAGCTTCAGCACAGCCAGAGCAATACCCAGTGTCTGGAGCTCAAGCATAAGCAGCTGGCAAAGGCACTGAGTGTTGTTGAGGAGCAGAAAGAAGCAGCTGAGCTAAGTCACTTTGAGGAGAGCTGTCGCAGCGCAGACCTGCAAGACAAggtgctACAGCTGGAGATGGACATTTTGAAGATGAAATCTAGCCTTGAAAGCAGGAGCACTGCTCAAATATCAGCGTCACATTCAAAGCCACACCTCGGCAGGACCATGCCTGTAACAAAAGATGAATTTGTCAGAGAGGGACAGAAAAAGGCTGAGAGGGAAATGAAGAAGCTCGAAGAAGCCCTTGGGGAGGCAGAAGAGAGAGCCGCGACCCTAGAGGCTGAAAAGGACCATGCATTAACACAACTCCGATCCTATAAAGAAGATCGGCAGAAGGTATTGAGACAGATGGAAGAGCTGAAGCAGAGGTTTAGCATGTCCTTGGCGGCCCAGAGTGAGTTGCAGGACCAGCTCAGCGAGACCCGCAGTCGCCTTGGCCAACTGGAACTGGAGAATGAACTGCTCACCACAAAAACATTGCGATTGGAAGACAACATAGAGGACCTGAAGTCAAAGCTATCCAgtgctttagctgaaaaagaTCGCCTGGTGCAGGAGAAAGCTGAACTGCACCAAAGAGTGCAAAGTTTGGAACTAGAGCTGCAAAGATCCCAGCTGGGCAGAGAGGGCTTTACCCAGCAAGTGTGTGATCTCCACTCCGAGCTGACTCAGGCCAAGAGCCAGGCCAGCCAACAACAGCAGAGTACCTTATTAATGAAAGAGGAACTGCACTCAGCCAAAGAGGTGAATGAGAAACTGTCAGCAGACCTGGCCATAGCCAAAGACAGGCTTCAGGAGACACTACAGCAGCTACATGAACTGGAAGCAGAGAAGCTGATCCAAACCAATCAGATATCTGCACTGGAGACTGAGCGTTTGCAGCTGATTGGAGAGAAGGAGGAGCTGATGGATGTTTTTGACCAGGGAGATCAGAAAGAGCTAAGAGATCTGAAGGAGACATGTTGCCAGCTCAGAGAATTACAGGAAATGTTGGAGTATGAGAAGAAAGAACTTGAGGCACATTGCCAGAGCCTGGAAAAGAAAGTACAGAATGTTGAGGCAGAGTATGGGCTTAAGGAACAAAAGCTGCAACTCATGAAGGAGAAGATGGAGCAAGAGAAGGAGGAGCTGAAGAGAGTGGCAGCTCACTGGAATGAGCGATGGCTGGATGCTGCGATGACACTGCAGTCTACTCAGGCCCAACTAGAAGAGACCAAGAAGCAACAGCAAGAGACTGATGCAATCATTCTTTTTCACGTTTGTCCTCAGCTGAGGGAAGAGGCAGCAGAAAAGCTGGAGACACTTGAGGCGGACAGGCAGAATATGATCCAGAGATTGCTAGAAGAGAAGACACACCATGAAAAAGAGCTGGCCAGAATTAAGAAAGAAGCTGGTGCTTTGGAACGGGTGGAGCTTGATGCCTGCAAACAACAGCTGGAACTAGAGAGGAACAGAAGCCAGACTCTGCAGCAGAGACTCATGGGAAACCCTGTGTCTCTGGAGGAAATGGATGGAGAGCTGGTGCAGCTGAAGGCTGAGCTGCAGAAGGTGTGGGACATGCTGAAGAGCCGTGACACTGAGCTGGAGGAGCAGCAGCACGAGCTGCAGTCTGCTCGTGGCCAGGTGACTCAGCAGAACAGCGAGGTACAGAGACTGGAGCAGCAACTGGCTAAGAGAGATCAGGAATTGAAACAAAGAGATCTTTTCCTAAAGGAtttgatgagacagagagacacagagaaaactCAGGCCCAAATCAAGATAACTGGTCTTGAAAATGAGCTTGCTGGACTAAAAGATCTTAAGACCATCCAGAAGCTGGGCACTCAACATGATTATCAGCCCATAGACTCCACCATGGAAGAGTGCAGTAGGACAACTGAGCAACTAAAGCAGGAAAAAGAGCAGGATCTGCAGAAAGTGCATAGTGTCAAACCTCCCCAACAGGGAAAAGGAGAGAGGCGATCACCATtaatgaagagaaaagagacagcAGTAAGGGCGGATATCATAGATCCTGACCAACAGAGGAGGCTAATCACTGAGCAGCTGAAAAGTCTGTTTAAGGGGAAGGAGCAGATGGGTGATATGGCATCTCCCATGATCCAGAGAAAAGCTGGGTCAGTACTGGACTGTGGCTCAAAGTCACCTAAAGTTATAAAGAATGCCATGGACATGGTAAGAAGTGAGGTGAAGAGACAACAGAAATGTGGACTTGATTCAGGTGTTCATGAGAAGACAGGagaacacactgcagaacagtTCGCTCCTAATAAAACTAAAGTGTCCACAGCAGATCCAGGATTTAAGAGTTCCAGCAAAGTCTAGCATGGAGATAGCACAAACCTGTGTGCTGTTTAATTCACAAATAAGAGGAGGCCCTGAAAATGAGACCACCCCTGTTTTGTGTGGATGGAATATTCCTAGCCTGGAAGGTTGAGGTGTGTGACTCAGAGCTggaagaggatgaggagtaTACTCAGGTTGTGGAGGAAGGCACTGACTTGTACTTGATTGATTGAATAACTTCATTACATGTTGAAAGATTTCAGGTACATTATTGTATAGTGAAATGATTTTTTGAGAAACCCTCCTGCAAATTCTTTTCTCAGAGAAGCAGAAGGTTTACTAAATATTCAAATTATTGTAATGAAAATCtgatacaaacaaaaatcagtGTCTGGTTCAGCTGTAGTATTTATGGGATACAGATTAAATACCTTAAATGAGACAATTACTGAAACATAAATTAATTTCAGACATTATGTTGTTAAGGCAGATCTAGAACCCTAGAAAATATGGCTAGATTAGAATATAAGACAGTCTTAACCCTGGCCTCATCTAACACCTAACCATTAGACCTATGTTCAATACAATATGCTATATCAAATTAGAGGCATATGCTGCTAAACAAAGCACATTTGACATTTGAAATTTTGCAGAAGttaatgtgcaaaagttttgTGATATTTCAAggttagataaaaaaaaattataatcttaCTATCAGTCAAGCTTCTGAGCTGTCTCAGCACTGATTTCAGACGCTTGCCTTCGAAATTCTTGTTGCACCAAACAATAAAAATTGCTTGAAATTATCTGAGTTAACATAACTGGGTTAGCTTCAAAGCAATATCCTGGTGTATCTTTGTGCTTATACTCATGTGAGGTGTGaatagtttgtaattattatctAATAAAACTGGTATAACTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178595 lncRNA upstream 122232 18182555 ~ 18184010 (+) True tmem17
XR_004578772.1 lncRNA upstream 167097 18130846 ~ 18139145 (+) True LOC117598020
TU178394 lncRNA upstream 391000 17914625 ~ 17915242 (+) True G150609
TU178374 lncRNA upstream 393659 17911637 ~ 17912583 (+) True G150592
TU178372 lncRNA upstream 465793 17832766 ~ 17840449 (+) True G150590
TU178695 lncRNA downstream 24518 18342243 ~ 18345729 (+) True G150873
TU178734 lncRNA downstream 49157 18366882 ~ 18367108 (+) True G150900
TU178777 lncRNA downstream 105833 18423558 ~ 18424220 (+) True G150933
TU178775 lncRNA downstream 107592 18425317 ~ 18444052 (+) False G150932
TU178776 lncRNA downstream 107592 18425317 ~ 18444052 (+) True G150932
XM_026920051.2 mRNA upstream 3317 18297594 ~ 18302925 (+) True amn1
XM_026919266.2 mRNA upstream 9540 18276911 ~ 18296702 (+) False si:ch211-106e7.2
XM_026919263.2 mRNA upstream 9545 18276911 ~ 18296697 (+) True si:ch211-106e7.2
XM_034307360.1 mRNA upstream 51472 18245858 ~ 18254770 (+) False slc41a2a
XM_026920066.2 mRNA downstream 50321 18368046 ~ 18375364 (+) True pkmb
XM_026919197.2 mRNA downstream 169759 18487484 ~ 18490931 (+) True pim3
XM_026919196.2 mRNA downstream 174020 18491745 ~ 18503991 (+) True brd1b
XM_026919195.2 mRNA downstream 174023 18491748 ~ 18503875 (+) False brd1b
XM_034307441.1 mRNA downstream 250888 18568613 ~ 18577366 (+) False prr5l
TU178368 other upstream 463707 17834237 ~ 17842535 (+) True G150589
TU178369 other upstream 463707 17834237 ~ 17842535 (+) False G150589
TU178370 other upstream 463707 17834237 ~ 17842535 (+) False G150589
trnav-aac_18 other upstream 2264995 16041175 ~ 16041247 (+) True trnav-aac_18
XR_003403067.2 other upstream 2486669 15807990 ~ 15819573 (+) False LOC113529564
XR_004578809.1 other downstream 357285 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 403870 18721595 ~ 18724686 (+) True urahb
XR_004578793.1 other downstream 758870 19076595 ~ 19077868 (+) True LOC117598072
TU179056 other downstream 803439 19121164 ~ 19125132 (+) False faap24
TU179313 other downstream 942899 19260624 ~ 19263893 (+) True G151401

Expression Profile