RNA id: XM_026919609.2



Basic Information


Item Value
RNA id XM_026919609.2
length 1336
RNA type mRNA
GC content 0.43
exon number 7
gene id zgc:153293
representative True

Chromosome Information


Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 19149067 ~ 19154118 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


CATGATTGACGTGTGTGTGGTGCGATCTCCGCGTAGAGGGGGCGGGACATTAAAAGGCAGGCGATAATGcaaacacactcgcacacagAGTGAAATCAGTGTAAACCATTGCCGTTGATTTTCTCCACACACTGgtttgagatgtcagtcccTCAGTCTGCCTCATCGAAAAgtctgacctcaactccactcaAAAGCAAATCCGCTGTCCCAAGGAGCATCCCGAGAAGCAGGAGTGTGGAATCCACGGGCGACTCAACCTACTCCCTGCTGTCCCCCATTTACCACGATAGCTTTGAATTATCAGATGACGATAAGGAAGAAGCACAGAATCAGTGTCAGCCGCCTGATGACCCCTCTCTCGCAGCACATGAAGGTGTATTACCCATAGGTCCTAGCAGGAATGAGTCCCTTCATGCAGAAGATACCTCCACAGGAAAGCTGAATCTGAGTGCATGGGAGCAGTGGCTTGTGAGTAAAGCCAAAGAAGAGCGAATCAAAATACATCAGAAATCCCTGcagCTAAAAGCTCTGAAACAAAAGAAGGAACAAGAAGAAAcagaacaacaaagaaaaaaaacagtcaatgaGTGTAAAATTCAAGAGTGGCTTCAAATGAAGAGACAACAGgaGAAACAGGAAAAGCTTTGCCGGGAGTcccagaaaacaaataaaatgcttcATGAAGAACAGAAACGGTTggagatagaaaaaaaagcccAAGAAAAATATAATGCATGGCTCCATAAGAAAAagcaagaggaaaaagaaaggaaattgaAAGAGCAAGAAGAAATAGCTagaagagaaaaggaggagagagaacagaaagagagagcagatGAGAAGTTCAAAGAGTGGCTTAAAAACAtaacagacaaagaaagacataaACGTAAGTCATCAGCATGTTCTGCTGaTGGCTATGACAATCTAAACTATCCAGCTCCCAGTTTTGTGAATCCTATTCCATGGAAGCCCATTCACATTCCCCAGCAGGACAGAACGCCTAGGAAGAACTCAGCACACAGGAAACAGCCAGGTCCACCGAAAAATTGCTCAACTCCATGTCTCACTTACAAACCAAAAGACACAATCAGCTTTGCATCCAAAAGACTGTGATACTTTCGGGTTGAGATCAAACATGGAACTTTTACTGTTATTAAATTGTACAGTACAAACAGAAGGGTTTTTATATTTGAGGATGATTTTAGAAATGCTTGTGGTCCTGATCTTGCACGGATTTAGCGTTCAATGGTTTATAGTGCTCACAGGCTAGAATGTGATGATTTTATAACTGTGTAATTGTGGCAGAAATGAttgaaaaatacaaaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU179021 lncRNA upstream 38094 19109843 ~ 19110973 (+) True G151134
TU178969 lncRNA upstream 151135 18955049 ~ 18997932 (+) True G151084
TU178978 lncRNA upstream 203125 18945275 ~ 18945942 (+) True G151093
TU178948 lncRNA upstream 352828 18747827 ~ 18796239 (+) False nfat5a
XR_004578837.1 lncRNA upstream 528246 18602145 ~ 18620821 (+) False LOC113530068
TU179305 lncRNA downstream 72541 19226649 ~ 19227893 (+) True G151395
TU179336 lncRNA downstream 163878 19317986 ~ 19393161 (+) True G151417
TU179337 lncRNA downstream 163878 19317986 ~ 19393161 (+) False G151417
TU179341 lncRNA downstream 239766 19393874 ~ 19397489 (+) True G151419
TU179343 lncRNA downstream 244170 19398278 ~ 19400388 (+) True G151421
XM_026919998.2 mRNA upstream 8127 19126879 ~ 19140940 (+) True slc7a10b
XM_026919585.2 mRNA upstream 23866 19121151 ~ 19125201 (+) True faap24
XM_026919185.2 mRNA upstream 169608 18806928 ~ 18979459 (+) False wwox
XM_026919362.2 mRNA downstream 183 19154291 ~ 19162148 (+) True LOC113529841
XM_026919363.2 mRNA downstream 183 19154291 ~ 19162148 (+) False LOC113529841
XM_026919358.2 mRNA downstream 13161 19167269 ~ 19175104 (+) False ccdc77
XM_026919359.2 mRNA downstream 13662 19167770 ~ 19175104 (+) True ccdc77
XM_034307367.1 mRNA downstream 50386 19204494 ~ 19216347 (+) True incenp
TU179056 other upstream 23935 19121164 ~ 19125132 (+) False faap24
XR_004578793.1 other upstream 71199 19076595 ~ 19077868 (+) True LOC117598072
TU178953 other upstream 424381 18721595 ~ 18724686 (+) True urahb
XR_004578809.1 other upstream 465639 18675010 ~ 18683428 (+) False rfwd3
TU178370 other upstream 1306532 17834237 ~ 17842535 (+) False G150589
TU179313 other downstream 106516 19260624 ~ 19263893 (+) True G151401
XR_004578759.1 other downstream 195510 19349618 ~ 19384904 (+) False srpk2
TU181223 other downstream 2898506 22052614 ~ 22058158 (+) True LOC113529593
TU181225 other downstream 2898506 22052614 ~ 22058158 (+) False LOC113529593
TU181233 other downstream 2922763 22076871 ~ 22078453 (+) False arpp19b

Expression Profile