RNA id: XR_004578672.1


Basic Information

Item Value
RNA id XR_004578672.1
length 2897
RNA type misc_RNA
GC content 0.36
exon number 3
gene id hrh2a
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 11295128 ~ 11306318 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCTAAGATAAGGCGTGCGCTCAGTGTgcaagagagcgagagaaaggagagtggagagagagagtttgtgtgtgacagagagaaggggagagaggaCATCACAAAAATGGAGGTCACATAAAgagcagaaagaaaaaaatatgatgcaCTGACTATGCTCACCAGAAGAGGGCGGCAGATTCTAACATGTCTTACAAAATGGACTCCTCTGGCCCCAAACAAGGATTCATCTGTGAAAGATCATAATACTTTGAACAAATCTGGATGCTGTCTCTATTTCCTTAAAATAACCCCAATCTAAGCTTCACCCCAGTTTCTAACAGTCCTCCAGTGTGATGCAGGTAGCTAAAGATGAAATTAATATGAACTATATGAATACAAAGGAGGTTTAGGAGTTCTGCATTGCAAAAGGgagattaattttctttctgttaTCTTCAGTAGGGGTTGTCAGCCACAGTCTGATGAAACATTTGGTCTTCTGAGAGCTCTGAGGAGAGAAAAGCTCTGAAGAAAGATTGAAAGATTGtgtattgagattttttttttcaactagtACTAGactagttgaaaaaaaaaaaaagaataatggaAAAGGGGGAGAAAAGCTACTTGAAAAAAGCACATCTGACCACCAACAGACAAGGCCTGGTTGACGGAGGCTACAATGATACAGACTGTAAGAAGTGAACAGAAAGCATTCTGTGCTACATGGTGCCCTCTACAGGTCAGTGGAGGAACTACAAGAAAAATGTGAATACTGTACAAAAACTGAAAACTTccactgtttctttttatttgctgtaaacTAATAGGTGGAAAATCTGTAGAGAAACCATTATATATAAACTTTCAAGGTTAAAAACAAATTGTAAGATAGTACTGTGTAAAGATAACAGTGAATagtaaaatattcaataaaaccTTCAATCAAATCATAATCTGCCTTTGCCGTTTAAACTGTGCACATTTTCTTAGGTGCACTGCTGTGCAGTTTTCTGAGGAACAAAAATGTgaatacaaaaaatatgaacaataacagtgttttttattattattgtattatgtgGTCTTAACTAGTACTGCATTTGTagcacatatatttttttacagttatatagtactgtgcaaagcaaagattaaaacaatgtaaaacaatcattaaaatattaaatcaaatgACGCTTTCATGTTTTTATGAGACATGTGGTCTGTTACTGAATATtgttaattactttttttttttaataatttaaaaaaatctgtaaaagattttttgaaaaatttaacatttggatttttttcactgattttttcactcatttttttacTGATCTCCACAGATCAGTAAAGCAGTAGACGTAAAAATGTAGGGGGcataaacttttgcacagtactgtatatattcaaaatatgtatttgaaatataaaatatgtacttGATAATTGTAGCAAAGTTATCAAAATGCTTttatgttctgtgtattttacattttcaaaatacagatattatgtgatggtgtgtgatactttttgctagctggctagctgacTAGCTGGATGGAACTAGCAAGGAAAGTTGCTAAGTTAAACTCTGTTAAGCTGTAGATGAAAGACAACAGGAGAAAATGTAAAGAGCAGGTTAACATTTATGATACAGTAATACTTTAGACAGCATCAAAACATTGTAATTGATTAACACTTTATAATTCATCAGACCACCAGTGTAGTTTCTGAAGACTAGCTAGCATCAGAATGCTAGCATTATCATTACAGACTAAAGTGGCTCCAATAATCTCATGCCACtcttataaaatgtatttttgtattttcaaactacgaaataatatttttcattttctttgttgcAGTGTTTTgcagggttttttgtttttgtttttgtttttgttttttacatatTTGCATCTGAGGTGTTTGTGGTATTTTACTGTAGCCCTGGTATTGACCGtaagacaacaaaaaaatttgCGAAGTGGAAGAAACACATGTTCTGTTAAAGCATTTTGATAgaaaatttcacatttcacatttcacattttctgtGGAAGTTGTTCAGCTTTTGGAAAGTTgcaaatccatttttttttctctcagtggcACATTGACATCTCCATCCCATTCCATTATatctgttcatgttttttttcctacctcactgcctcacacctctctccctttctctccatctctctctgtgtgatgACCCAcccaacattaaaaccattcatCACTGCCTCTTTACCATCAAATTATCAAagactagcacacacacacaaaacacgcacacacacacacacacacacacacacacacacacacacacacacagagacattcttcAATAACACAGATATTTAATGGGCTCTCCAAAGCTATCCATCATCACCATTTGTCATCAAAATatcaagaaaataaatgtgGTGGATGCAGACACGCGCAggacacacagctacacacacgcacacacacacacatgcacacatgcacacacacacacacacacacacacacacacgtatatacaaATACTAATTCCAGTGAGTCTTGCCCTCAGGTGATATTCTCCAACAAAAAAGTTGGAGGAAGAAAGGGGGAGATAATGAAAGGACAGTGGAAATGgtgtgtgagggaaaaaaacagagcagaacTGGAAGAAAGgatcagaaagagagacaatCACTGTATTGTAAGGTAGCAATCAGGGAATGTGAGCAGGGGGAAAAGACATGCATGCACTTAAATCACTGATTACAAagaagagtgaaagaaaagtgTCCATTTGAGTACTCATATACAGATTTTCTACTGATTGCAGTCACTTCCTGAATTAAACTGCACCAACAAAAGCAGCCACATTGAAGACTTCactgtttatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173544 lncRNA upstream 1645 11221581 ~ 11293483 (+) True G146513
TU173383 lncRNA upstream 241703 11053167 ~ 11053425 (+) True G146380
TU173380 lncRNA upstream 243708 11051216 ~ 11051420 (+) True G146377
TU173306 lncRNA upstream 277774 11016095 ~ 11017354 (+) True G146308
TU173320 lncRNA upstream 398744 10895741 ~ 10896384 (+) True G146322
TU173609 lncRNA downstream 110860 11417178 ~ 11417389 (+) True G146576
TU173606 lncRNA downstream 135212 11441530 ~ 11443247 (+) True G146573
TU173699 lncRNA downstream 212004 11518322 ~ 11579432 (+) True G146645
TU173740 lncRNA downstream 289198 11595516 ~ 11597965 (+) False atp6v0e1
TU173748 lncRNA downstream 364444 11670762 ~ 11671670 (+) False G146687
XM_026918809.2 mRNA upstream 67240 11198866 ~ 11227888 (+) True LOC113529553
XM_026918810.2 mRNA upstream 67240 11198866 ~ 11227888 (+) False LOC113529553
XM_034307081.1 mRNA upstream 460604 10832104 ~ 10834524 (+) True LOC117597888
XM_034307080.1 mRNA upstream 467742 10825470 ~ 10827386 (+) True LOC117597887
XM_034307120.1 mRNA upstream 482006 10811938 ~ 10813122 (+) True LOC117597912
XM_026918811.2 mRNA downstream 18039 11324357 ~ 11335757 (+) True LOC113529554
XM_026919654.2 mRNA downstream 87860 11394178 ~ 11413501 (+) False pmt
XM_026919652.2 mRNA downstream 88309 11394627 ~ 11413501 (+) False pmt
XM_026919653.2 mRNA downstream 90387 11396705 ~ 11413501 (+) True pmt
XM_026919621.2 mRNA downstream 113999 11420317 ~ 11441411 (+) True zgc:152774
TU173183 other upstream 747336 10543875 ~ 10547792 (+) False si:ch73-233f7.1
TU172076 other upstream 2452862 8841476 ~ 8842266 (+) True G145233
trnaa-agc_11 other upstream 3250718 8044338 ~ 8044410 (+) True trnaa-agc_11
trnaa-agc_10 other upstream 3252821 8042235 ~ 8042307 (+) True trnaa-agc_10
trnaa-agc_8 other upstream 3255457 8039599 ~ 8039671 (+) True trnaa-agc_8
TU174750 other downstream 1610601 12916919 ~ 12917254 (+) True G147542
TU175114 other downstream 2043008 13349326 ~ 13353253 (+) False zgc:172145
XR_003403080.2 other downstream 2455016 13761334 ~ 13775183 (+) False ces2b
trnar-ucg_5 other downstream 2514272 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_004578669.1 other downstream 4501672 15807990 ~ 15822591 (+) False LOC113529564

Expression Profile