RNA id: XM_026919663.2


Basic Information

Item Value
RNA id XM_026919663.2
length 2938
RNA type mRNA
GC content 0.51
exon number 10
gene id si:ch211-236l14.4
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 12781288 ~ 12806453 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAAAAGACGTGTGGGAAACAGCCACGCGCGCTTTAACCAAATGCGTTTTGGAGAGAGCGCATTTCGGGCTTCACGTATGGGAGACTCATTCCTGTTCCCCAAAGCGGTCTGCTGGGAATATGAGGCTTCCAACTCTCCCGGCACCCTCatccccctctctcttctcCACCTTTCTGAATGTGAAGAAGTGCTTGGCGGTTACGTCAGACTCCGGAGCGAAAAGTGCAGGGCAAGCAAATAACGCGGCTAAGGAGCCGCTCGCAGACTCTGCTCCCAAAAGCACAGCCTGCTCACTCCTCTGTGATCAGTCCTGTCACTAAAGACCACTGCTAAAAGCAATGCTGTAAGTCAggggtttctctctctctctctctctctctctctctctctgttttttcttatGCGCGCTTTGGAAACTGATTTTCCATGGTGTGACGAATACGCAACCAAGGACAATATCCAGTGCACACTGAGACGGCACGCTTTCTCTGTGATCCTTGCAATGACACGATGAGGCGTGTGAGGATTTCTCCACGACTCCACGACTGATTAGATTTGTCTATCCGCCCGAGAGCGACCGACATGCCGCACGCGCGAGCCAGGAACCCGAGCCCCATCCCGGAGGTAACGTGGGACGCAGGGCACAAGGAGATGAACGAGACGTGGAAGGGGGCAGTGGCGTGTCTCGGCGTGGCCGTGTTCTTTGTGATGACCATCGGCATCATTTACTGGCAAGTGGTGGACCAGCCCAACAAGAACTGGATCCTGAAGGGCAGCTTCAGCGGGCTGGTGTGGGAGCGCAGGGCGCATTCGCTTGTGGTGCAGACGCTCTCTGAGGACAAGACGTTCGTGCAGATCGACCTGGGACACGCGGGCGGCTCTGAGGCTGATGTGCCGTTCGTGCGCAACCTTTGTTGGCTTAACAAGACCGAGTTCTGCTACACGTGGGACTCCGTAGCCGACGTGAGGATTTCTCTGGACGCCGGCGACGAGGCCGGGACCGAGTGCTACACCGTGACCTGGACCCCGGTGCACTGCCATGTGGAGCTCAAGGACTGCTTCTCCATGGATAATGTATCGTGGTACGGTGGGGCCAGTGTCCAAGCACTGCGGTGGCCAATAAACGATGTGGATATTTCAATGCAGCCCTTCACTGTCAGTGACCTGCGGGACAACCCCTCTGGCTTTGGTTCAGTCCTAGAGCGCTATTTCCTGGGCTCGTCAGGTGTGGCAGTACTGGTGGCCCCACACATCCCACTGCATGTAGGGGTAGAAAGCAGGCGGCAGTTCTGTCTTCAGACATCACCCAGTATGGCGCGTCTGCCCCTGCAGTACACTGTCTGTGTGGGAGAGAACGTCAAAGCCGTTTACCAAGAGTCAATACAGAAGCTCTCCATGCCCTATCGAGAACTGCCCGGCATGAATGTCTTACGGCTGCCTTTCTGGAAACTTCCAGCAAGTGTGGACTCAGGGGCAAAGATCGAAAGGGAGCTGAGAACCTTCTCTAACCGGCTGAAGAGGCACCACCTAGGTGAAGGGGTCATCAGCCTGGATGAACATTCCACATCTCTCCTCTCCAACATGGTCCATGAGTACCACAATGGAAGAAGAAGGACTTCTAAGAGACAGAGCAGAGACCTGCCTTTCGTGAAGTTTCTGAACATTTCCGTAACCCTGTCCCCATATATAAGTGTGGACTCACGGCAGTTTCAGACCTCCATACAAGAGAGAATGCAGGATTACTGGCTCAGCCTGCCCACCGGCCCACGGGCTCAATTGGTTCCTTTATTAACTCAGTGGAGAGGAAAATACTGTGTCAAATTGAACATCACAAATCCAGAAGCCACCAACTGGTTCTTGGAAAGAGTGAGCAGCTTACACAGTCACTTGGGCATGGAGTATGTGATGCTAGAGGGTGGGGAGGGAAACCCATTTGAAGAGAAGACTATGCGACACTCTCCTGTCCTCACAGGAGATGAATACATCAGGCTCCTGGCAGACCTCGCTGAGAGTATTGGGGACAATACTATTGTTAGCGCAGGAACAAGGTCCAGCCATAAGCCTTTGTTCATCCGTATGAGTGCACTGCAGTCTGACTGGAGCTATGCTGGCCTCAAGGGTATCATTCCATCCCTGCTGCATTACAGCCTGCTGGGCTATAATTTCTTCATTCCCGATGCAGTAGGAGGCTCTTTATCCACTGAGCCTTTCACAGATGATGAACTCTTCATTCGCTGGCTGGAGATTGTGGCCTTTCTTCCTGTGCTCAGTTTTCAGACACCTCCATGGGCATCTGGGGTAGACAAGGTCCTTAACCTAACCAGAATCTACATCACTAAGCGCCAGGACTTTGTAGTGCCTCTGATAGAGAAATATGCACAGGAGTGGCATGCCACAGGAAACCCCATCTACCGCCCGCTGTGGTGGATCAGTCCTGATGACCCAGCCACATTCACCATTGATGATGAATTTCTCATTGGAGATGAGGTACTTGTTGCACCAGTGACAGAAAAAGGAGCTTTGCAGAGAGACATATATCTGCCAGGGAGTAACTTTCAGTGGCAAGACACCAACAATGCTAAAGTGTTTGATGGCGGGACGCTCCTACAAAGTTACCATGCTGGGCTTGAGGAGGTGCCTGTATTCATCCGAAAGACCTCCTGAGGTCAACTGTCTGACTATCACAAGGCCGATTTTctatttttgactttttatttttcagttgtgCTGATCTCAAGTTGCACTTTCCACAAAGACCATTTTCTGTGTTCTAAGGCACAGTCTTAAGATTATGTACAAGATCATTTCTATTTGCACTTTATAAATGAAAGATATTTATATTATctataatattttgaaatcatGTGGTTTCATTTATCTGCTAGATTTATTTGTGGTAATTCAATGTTTTCTacctaccttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174636 lncRNA upstream 89866 12690927 ~ 12691422 (+) True G147438
TU174634 lncRNA upstream 90809 12690201 ~ 12690479 (+) True G147436
TU174004 lncRNA upstream 680722 12092180 ~ 12100566 (+) False G146883
TU174005 lncRNA upstream 685127 12092180 ~ 12096161 (+) True G146883
TU173998 lncRNA upstream 720702 12060295 ~ 12060586 (+) True G146877
TU174670 lncRNA downstream 4069 12810522 ~ 12811329 (+) True G147472
TU174677 lncRNA downstream 25375 12831828 ~ 12832066 (+) True G147479
TU174762 lncRNA downstream 126428 12932881 ~ 12937704 (+) True G147554
TU174778 lncRNA downstream 132144 12938597 ~ 12985366 (+) True G147560
TU174767 lncRNA downstream 132953 12939406 ~ 12943061 (+) True G147558
XM_026919747.2 mRNA upstream 96467 12680740 ~ 12684821 (+) False igf2b
XM_026919748.2 mRNA upstream 96467 12681130 ~ 12684821 (+) True igf2b
XM_026919481.2 mRNA upstream 106707 12666989 ~ 12674581 (+) True th
XM_026919319.2 mRNA upstream 152791 12619213 ~ 12628497 (+) True uevld
XM_026919997.2 mRNA upstream 163868 12612041 ~ 12617420 (+) True spty2d1
XM_026919392.2 mRNA downstream 30558 12837011 ~ 12850393 (+) False nap1l4a
XM_026919393.2 mRNA downstream 30559 12837012 ~ 12850393 (+) True nap1l4a
XM_026919520.2 mRNA downstream 56048 12862501 ~ 12863555 (+) True phlda2
XM_026919270.2 mRNA downstream 316690 13123143 ~ 13161929 (+) False dusp8a
XM_026919271.2 mRNA downstream 320033 13126486 ~ 13161929 (+) False dusp8a
XR_004578672.1 other upstream 1474970 11295128 ~ 11306318 (+) False hrh2a
XR_003403100.2 other upstream 1477342 11295128 ~ 11303946 (+) False hrh2a
TU173183 other upstream 2233496 10543875 ~ 10547792 (+) False si:ch73-233f7.1
TU172076 other upstream 3939022 8841476 ~ 8842266 (+) True G145233
trnaa-agc_11 other upstream 4736878 8044338 ~ 8044410 (+) True trnaa-agc_11
TU174750 other downstream 110466 12916919 ~ 12917254 (+) True G147542
TU175114 other downstream 542873 13349326 ~ 13353253 (+) False zgc:172145
XR_003403080.2 other downstream 954881 13761334 ~ 13775183 (+) False ces2b
trnar-ucg_5 other downstream 1014137 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_004578669.1 other downstream 3001537 15807990 ~ 15822591 (+) False LOC113529564

Expression Profile