RNA id: XM_026919672.2


Basic Information

Item Value
RNA id XM_026919672.2
length 2658
RNA type mRNA
GC content 0.44
exon number 14
gene id hexa
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15874863 ~ 15882172 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCTCGCTCTGTTCGAACCCAGCACCTGGTTTTGTGACCTGAATGCAGCTGAAGCCCTAGACTAAGATGGGCCGTTTGCGTTTTATCTTGTTGCTGTGTCTTTCAGGTAAACTGCAGCAGGTTTATGGAGTGTGGCCCCTGCCGCAGAGCATCACTCAGTCTAATGAGCGGTATGTGCTAAATCCTCACCTGCTCACTTATGAGCACGCGAACGACTCAGCTGCGCGAGGCGGATGCTCTGTCCTGGATGCTGCCTTCAAAAGATACTTCAGGATCATTTTCCCCGACTTTGCATATGGAACAGGATTCACTAACACTTGGTCTGAGCCCAAACCCTTCACAGTGTCAGTGAGTGTCAGAAGTGGTGGATGTGATGACTACCCTGATGAAGATTCAGATGAAAGTTATAACCTGAGTGTGTCAGCAGGTCAAGCTGTGTTAAGAGCAGAGTCAGTGTGGGGAGCCCTGAGAGGTCTGGAGTCCTTTAGTCAGCTGGTGTACCAAGATGATCATAACTCATATTTTGTcaataaaacagaaattgtGGACTTCCCACGATTTCCGTTTAGAGGGCTTTTGCTAGACACATCAAGGCACTATTTACCAGTACATGCTATACTGAAGACTCTGGATGCCATGGCTTATAATAAATTCAATGTATTTCACTGGCACATTGTGGATGATCCTTCTTTCCCTTACCAGAGCCACACTTTTCCTGATTTGAGCAACAAGGGAGCCTTTCACCCTGTGACTCACGTGTACACACAGTCAGACGTGAGGAGGGTGATCGCTCATGCGAGATTCCGAGGAATCAGGGTGGTGCCAGAGTTTGATTCTCCTGGGCATACTCAGTCATGGGGTAAAGGGCAGCCAGACCTGCTGACGCCCTGCTACAAGAGAACTGTTCCCTCTGGAACATTTGGCCCCATCAACCCAACTCTGAGCTCCAGTTACCAGTTCATGAACAGCCTCTTTAAAGAGGTAACCTCTGTATTTCCTGACTCGTTTGTTCACCTTGGGGGAGATGAGGTTGACTTCACATGCTGGAAATCAAATCCTAATGTGCAGGCATTTATGGCAAAGATGGGCTTTGGGCATGATTACTTCAAACTGGAGTCTTTCTACATGGAAAGTATTATGAACATCACTGCTGCCTTTAACAAGACCTCCATTGTTTGGCAGGACGTTTTCGATTACCACAAGCGAAGCAAGGCTCAATATGTGGTGGAGGTGTGGAAAAGAGGATGCTACCTGTGTAAGGTGCGCCAGGTGGCTAAGGCCGGACTGAAGGTCATCCTGGCTGCGCCATTCTATCTGGACCTGCCTGGACCCACTCACAACTGGGCTCGCTACTACACTGTGCGCCCTCTCTCCTTTAAGGGCACAGAGCAGCAGAAGAAGCTGGTGATTGGTGGTGAGGTCTGCATGTGGGGAGAATATGTGGACGCAACCAATCTCAGTCCACGCCTGTGGCCCAGAGCGAGTGCAGCTGCTGAGAGGTTATGGAGTAATGAAGAGCAGACGTCTAGTGTGGATGAGGCCTTTCCTCGCCTAGAGGACTTCCGCTGTAAAATGATAAGaCGTGGCATTCAAGCAGAACCTCTGTTTATAGGCCACTGCAAACATGAGTATATTGGTCTATAGAATACATGGATCaggacattttattattatttattactaataCATGAATATACTGTTTATCCTATATTGCAATGAATTCATTCTAAAAGAATTtaactgaggagaaaaaaatgtatcataGCTTTATAAAACAGCAATGGAAATAGCCTTAATTTCATTTTACTATTAAGTTCATTTATCTTAATTTGAACTCATCACTATTTTGTAGAATGAAGACTTTTTATTATGGTTATTTATgggactgtaaataaattgcTGAAGTAAAGCATGTACACCTTTAATGAAATTTCCTTCTTCCATTACACTGGTCTCATCTCACTAGCAGCACAGTAGCAGATCCTATTAAGGCTGATGGAGTTTACACCTGAGCTTAATTAGGACATAGTGAGATGTGAGTGTCCTGAAATATCAGAATCACAGTACGTTCTGCTGTGCAGACCACAATATGGCAATACATTTTGGGAAAAGTCCAGGACACAAAAGTCatgcatgtaaaaaaatacaactagGGTTCACAGTAAATATGTTACTCAAACTTCTAGttccctgttttcttttttcccctccatccAGTCTCTGTATGTTCTATGGCCTAATGGCCTGACCCTTATTTGTTACAATTCAGCAACAGTTCCTCATTGCACACAATAAGCCTCCCTATGCCCTGTTCAGCAGTAATGTAGTTGTTTAACGTAATTCCCCctaatatttaatttacttgCTAAATGAGCTTACATGGTATTGATATTTACTTAGACGATTGATTTTCTCATTGCTGGGATTATGATGCTGACAGCAGATGGTAGGGATTGACTAATCCTGCAAGGCCTAACGTTCCCTGGACCCTCCTTACACCACCTCCTGCTGGCCACTCGTAACCTCAGCTTAAGGGGTTCCACACTTCAGAGCCGCAGTCAGTCCTGTGCCTCAACAACTGCCAGGAATTGTCTACCTGCTGGATAAAAcctgttctgttttttctttatgaAACTGTGGAAAAATTTTGCTCCTGT

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004563 beta-N-acetylhexosaminidase activity molecular_function

KEGG:

id description
K12373 HEXA_B; hexosaminidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176828 lncRNA upstream 56495 15771838 ~ 15818368 (+) True G149276
TU176815 lncRNA upstream 119951 15754665 ~ 15754912 (+) True G149268
TU176798 lncRNA upstream 149772 15721348 ~ 15725091 (+) True svip
TU176794 lncRNA upstream 162946 15711013 ~ 15711917 (+) True G149248
TU176640 lncRNA upstream 305376 15567836 ~ 15569487 (+) True G149131
TU177010 lncRNA downstream 142672 16024844 ~ 16026512 (+) True G149427
TU177011 lncRNA downstream 145435 16027607 ~ 16028019 (+) True G149428
TU177169 lncRNA downstream 372512 16254684 ~ 16255314 (+) True G149552
TU177191 lncRNA downstream 446084 16328256 ~ 16328539 (+) True G149574
XR_004578685.1 lncRNA downstream 456418 16338590 ~ 16341963 (+) True LOC117597940
XM_026919874.2 mRNA upstream 33356 15832179 ~ 15841507 (+) True sigirr
XM_026918826.2 mRNA upstream 52272 15807990 ~ 15822591 (+) True LOC113529564
XM_034307166.1 mRNA upstream 52272 15807990 ~ 15822591 (+) False LOC113529564
XM_026918674.2 mRNA upstream 122337 15751139 ~ 15752526 (+) True fancf
XM_026918680.2 mRNA upstream 149997 15721292 ~ 15724866 (+) False svip
XM_034307515.1 mRNA downstream 5935 15888107 ~ 15890739 (+) True nr2e3
XM_026919786.2 mRNA downstream 5935 15888107 ~ 15890739 (+) False nr2e3
XM_026918758.2 mRNA downstream 9481 15891653 ~ 15895454 (+) True stoml1
XM_026919885.2 mRNA downstream 15504 15897676 ~ 15905329 (+) True LOC113530122
XM_026919989.2 mRNA downstream 86371 15968543 ~ 15980245 (+) True stra6
XR_004578669.1 other upstream 52272 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other upstream 54707 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other upstream 55290 15807990 ~ 15819573 (+) False LOC113529564
trnar-ucg_5 other upstream 2054201 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_003403080.2 other upstream 2099680 13761334 ~ 13775183 (+) False ces2b
trnav-aac_18 other downstream 159003 16041175 ~ 16041247 (+) True trnav-aac_18
TU178368 other downstream 1952065 17834237 ~ 17842535 (+) True G150589
TU178369 other downstream 1952065 17834237 ~ 17842535 (+) False G150589
TU178370 other downstream 1952065 17834237 ~ 17842535 (+) False G150589
XR_004578809.1 other downstream 2792838 18675010 ~ 18683428 (+) False rfwd3

Expression Profile