RNA id: XR_004578809.1


Basic Information

Item Value
RNA id XR_004578809.1
length 2757
RNA type misc_RNA
GC content 0.49
exon number 14
gene id rfwd3
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18675010 ~ 18683428 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCGACTtatacacttttgctaaggccacgGCTTAATGCAttggttttttttatcatgCTCTACaaatcttccaggttatttatacaagtaatgaataaaaaaatcaactattaaACCTTTAACATCAAAATTAGCTCGTGCTCATCTGCGCCCCGGTTGCACGTGAGTAGAGAAAGGCGGGCCTACGGCTTGGCGCGGACTTTGGAGGGTAGTAAAACTATCTAGCTGGTGGCGTGGAACAGAGAcctaattttataaatatttattctgaGAACCAGTCAGTGTATTATTAGTCCAGTTATCCTAAAGCCTATGTCGATCAGCTCATGGATGATGGTTGATTAATGTGGAATAAGGGTTAAAAGCGAGCTATAAGATGGAAGATATGGAAGTGGATGTGCAGTTTGGAGCAGCAGGACCAGATGGTTCTGTTGGTCTAGAAGTTCCCATCATCATCCCTGACTCTGGGAGCAGCACAGAAGcagaagaggatgaagaggcTGATAGGAGACCTGAAGGAGGAAGCACGGCTCCTGCTAACAGGCCACGGCTCGCAACAACTCAAATTGTCAGGAGAAGGAGGGCTAGAGCAGGTCTGCGGTTCCAGTACTCCACACAGGCTACACATTTGAACAGAGGCCCTTTAGACTTTCTGCTTAGGGTGtcaacaggaagtgagacagAGCCTCTCTCAGGCAGCACAGACGAGGTGAGCGACTCTGAGGAGGAAAGACAGAATAGAGAGGCCTTGGGTCCAGTACCTGCTGCAGAGGTTCCAACGATACTGAACAGCAGCCAGCCTGCTTCTCTGGTCACCCCTCCTCTTCAACAGTCCAGTGCAACAGagcctacTGTTTCTGCTGAAGCTGACAGGGCTGAACCTCTAGTTCAGTCTGAGGACAGGGCTGATTCAGCACCCGCAGAGGCCACTGAAGGTGCTTCTCTCTCGGCTGCTGTGGCTGAGAATGATGAAGGGGAGGGAGAGACCTGTTCTATATGTTTCGAACCTTGGACCACGTCTGGTGAACACCGTCTAGCCACGTTGCGATGTGGCCACTTGTTCGGCTTCACCTGTATTGACCGCTGGCTGAAGGGCCAAGGAGCCAAATGCCCCCAGTGCAATAAGAAGGCCAAGCGGGCTGATATAGTCTTGTTGTATGCACATAAACTGAGGGCAGTGGACAACACAGAACAGGAGAATTTAAAGAGAGCTTTGGAACAGGAGCAGAGTTTGCGGAGGAAGGCAGAGCTGGAATCTGCTCAGTGTCGTCTTCAGTTACAGATTGTTACAGACGAGTGTGGGAAACTCAGCCGAGAGCTTCAGGAGCTGAGGAGGTTAATGGCACAGACTCCCTCCAGCTCGGCTCAGTCTCAGACCTCtgccctgtctctgtctcagagACATGAATCCTCAAGCAGGGGAAATTATGTTTTCTCCAAGGCAGTCCTTGTTTCTCAGGCTGGTGGGTGTCGTGTGCTGTCTTACTGTGAGTCCCTCAGTTGCCTGTTGGCTTCTCAACCCTCCCCTCATGCCTCTCTGGTCCCTGGATTTGGggtgaaaaaaatcagcactGTGAATCTCAAAGCCAGTCATTATGTTCCCATCCACATTAAACAGATCAGAGGCCTTGCCTTCAACAGACAGCAAGATGGCCTTCTGCTTTCTGCTGCCTTCGATAATACTATCAAGCTCACCAGCTTGTTTACTAACACTGTGGTACAGGCCTACAACACTGGGAAACCTGTGTGGAGCTGCTGTTGGTGCCacgacaacaacaactacaTTTATGCTGGTCTGAGCAACGGCTCGGTACGGGTATACGACACGCGGGACACAAGCGCTCATGTGCAGGAGCTCGCACCTCTTCGCTCCAGTTGTCCAGTTGTATCCCTGTCCTACCTCCCCCGTGCCGCCTCCAGTTTGTTCCCATGTGGTGGCCTCATCGCGGGCTCCCTTGAGGGAGGATGTTTCTGGGAGCAGGTGGATGGAACCACCTATCGACAGCACATTCTGCCTTTAGAGTCTGGAGGCTGCACAGACATTCAGGTGGAACCTGAGAGCAGACATTGTCTGGTCACCTACAGACCGGGTCGCATCAACCCATCTTTGCGTTGTGTTCTGATGGAGCTTAACCGAAGCCCTCATCAGGACTCTGCCCAGCCTCCTGTCTGCTCCTGTTCTCCTGTCCAGACCTTCACTGCTGGCTCTTCTTCCAAGCTGCTCACAAAAAATGCCGTGTTCAAGAGTCCTGCTACTGACTCCACTCTGGTGTGTGCAGGAGATGAGGGCTCTAATTCTACCATGgTCTGGGATGCTAGTACTGGAGCCTTGCTTCAGAAACTTCCTGCAGACATACCAGTCATGGACATCTGCCCTTTTGAGACGAACCAGGAACACTACCTGGCTTCTCTAACTGAGAAGATGATTAAGATCTATAAATGGGAGCAGAGTGGCTCAGAAAGAGTGGGTTTCTGATAGGAGCACTTTTGGTTGTTGTTGGATCCTGTGAGGATGTGGTCTGTTTTACTCTTGACATAATGTTTCATTGAAATCAGGTGAATATCTTCAAAGCATATTTTTTACTCTTGTCCCACTGGTCCACTTTCAACATGATACATGATTTAAGAATGCAACAAAGAGACATGCCTTTGCTTTttccctgtgtgtttgtgtgtggtggaaaatgtatatatgtaaatgcttttttttgttgttctgtaATTGTACTTcttaataaatgtatatgtaacattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578835.1 lncRNA upstream 54189 18601539 ~ 18620821 (+) True LOC113530068
XR_004578834.1 lncRNA upstream 54189 18602144 ~ 18620821 (+) False LOC113530068
XR_004578837.1 lncRNA upstream 54189 18602145 ~ 18620821 (+) False LOC113530068
XR_004578836.1 lncRNA upstream 54190 18601568 ~ 18620820 (+) False LOC113530068
TU178803 lncRNA upstream 122873 18551893 ~ 18552137 (+) True G150958
TU178948 lncRNA downstream 64399 18747827 ~ 18796239 (+) False nfat5a
TU178978 lncRNA downstream 261847 18945275 ~ 18945942 (+) True G151093
TU178969 lncRNA downstream 271621 18955049 ~ 18997932 (+) True G151084
TU179021 lncRNA downstream 426415 19109843 ~ 19110973 (+) True G151134
TU179305 lncRNA downstream 543221 19226649 ~ 19227893 (+) True G151395
XM_034307402.1 mRNA upstream 2958 18659641 ~ 18672052 (+) True ticrr
XM_034307404.1 mRNA upstream 2958 18659642 ~ 18672052 (+) False ticrr
XM_034307403.1 mRNA upstream 2958 18659642 ~ 18672052 (+) False ticrr
XM_026919904.2 mRNA upstream 2958 18659642 ~ 18672052 (+) False ticrr
XM_026918806.2 mRNA upstream 20835 18652771 ~ 18654175 (+) True c9h11orf96
XM_034307186.1 mRNA downstream 1709 18685137 ~ 18707311 (+) True glg1a
XM_034307187.1 mRNA downstream 1709 18685137 ~ 18707311 (+) False glg1a
XM_026919751.2 mRNA downstream 38173 18721601 ~ 18724513 (+) False urahb
XM_034307512.1 mRNA downstream 38180 18721608 ~ 18724513 (+) False urahb
XM_034307513.1 mRNA downstream 38212 18721640 ~ 18724513 (+) False urahb
TU178368 other upstream 832475 17834237 ~ 17842535 (+) True G150589
TU178369 other upstream 832475 17834237 ~ 17842535 (+) False G150589
TU178370 other upstream 832475 17834237 ~ 17842535 (+) False G150589
trnav-aac_18 other upstream 2633763 16041175 ~ 16041247 (+) True trnav-aac_18
XR_004578669.1 other upstream 2852419 15807990 ~ 15822591 (+) False LOC113529564
TU178953 other downstream 38167 18721595 ~ 18724686 (+) True urahb
XR_004578793.1 other downstream 393167 19076595 ~ 19077868 (+) True LOC117598072
TU179056 other downstream 437736 19121164 ~ 19125132 (+) False faap24
TU179313 other downstream 577196 19260624 ~ 19263893 (+) True G151401
XR_004578759.1 other downstream 666190 19349618 ~ 19384904 (+) False srpk2

Expression Profile