RNA id: XM_026919770.2


Basic Information

Item Value
RNA id XM_026919770.2
length 2273
RNA type mRNA
GC content 0.46
exon number 10
gene id zgc:101540
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17316673 ~ 17322858 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCCTGAAGCGAAATCTTGGAAAGGATTGATTACATCTATCTGTCTGGCTCATATCTAAGAGCTTGTGATTTCCACGTTTCACAGTGCTGCACTTTCCTTTTCTGGATCAGGCTTTgtctgagcagcagctctgttcGCATGGCCATGTACGTGTGCTTTACTTTCCTTGTGGCTGGGCTGTGTGTGCTGCCTGCTTTGCTGTGGACACTGTGTCCATACCTGCTCCAGGACTGCGCCTACATGCTGAACGCTGTGCGCTTCGGACTGCGCCTGGAGCGCTACAAGAGGAGAGCTCGCTTCTACAGCATTCTCGACTGTTTTCTGGATGCCGTGAGGAAACATCCACACAAACCCTTCATCCACTTCATGGGAGAGACGCACTCGTACTCAGACGTGGACAGAGAGAGTAATAAAGTGGCTCATGCTTTGCAGAAGGTGGCTGGACTGAAGGAGGGTGACGTTGTGGCCTTGTTCATAGGCAATGAGCCTTGTTTTATCTGGCTCTGGCTGGGCCTGGCTAAACTCGGCTGTGCCTCTGCTTTACTCAACTTTAACATCAGATCCAAATCTCTTCTGCACTGCTTCTCCTGCTGTGGTGCAAACGTGCTCATAGTGAGCGAAGAGCTCTGCGGTGCCATTGAAGAAGTTTTGCCTGCTTTGAAAGAGAAGAGCATCAGCGTGTATGTGCTCTCTGATGCATGCAGCACAGATGGCATTAAGGGCATCTCTCAGGCCATCACACAGGCGCCTGACGAAGCGCTGTCTCCATCACTCAGGGCTAATGTTAAATTCCACAGCACAGCGCTATATATCTACACATCTGGAACCACCGGTCTGCCTAAAGCAGCCATGGTGACTCATGAGAGAGTCTGGGCTGCTTCATTCATCCAGGCTGTTTCTGGGGTCACATCTGAAGACGTGTTTTACCTCAACCTGCCTCTGTACCACAGCGCTGGCTTCCTCATAGGATTCACCGGCTGTATTGAGAGAGGGAATACTTTAGTTCTGCGGAGGAAATTTTCTGCCTCTCAGTTCTGGGACGACTGCAGGAAGTATAATGttacagtgatgcagtacatTGGAGAAACAATGCGTTACCTCTGCAGTACACCAAAGAGAGATAATGACCGAGACCACAAAGTGAAGATTGCTATAGGTAACGGTGTACGAGCCGACGTGTGGAATGAATTTTTGAATCGCTTTGGGAATATTTACGTCAGGGAGCTCTACGCTGCCACAGAGGGAAACATCGGGTTTATTAACTACACCACTAAGGTTGGAGTGGTAGGCCGTGTTAACTTCCTCCACAAGAAATTGTTCCCCCATTCCCTGATCAAGTTCGACATCGAGAAAGAGGAGCCTGTGAGGAATGCAGACGGACTTTGTGTGCCAGCAGCTCGAGGTGAGCCTGGACTGCTGGTTGGGAAAATCACCATTAAGTCTCCATTTGTTGGTTACGCTGGAAACAAGCAGcagacagaaaggaaaagactcagaaatgtgtttgttgaaGGCGATCTCTATTTCAACAGCGGTGACTTGCTGAAAATCGACCATGAAAACTTCGTCTACTTTCAGGATCGGGTTGGAGACACTTTCAGATGGAAAGGTGAAAACGTAGCCACAACTGAAGTATCAGATATTCTGACTATGGTGGACTGCATTGAGGAAGCAAACGTCTATGGCGTCATGGTCAAAGGGCACGAAGGGAGGATTGGAATGGCGGCTGTTGTGTTGAAAGAAGGGAAGGAGTTTGATGGCATTGACACATGTAGAGTTTTAGCTAACTACCTACCAGTTTATGCCAGACCTCGTTTCATTCGCATTCAGAGTTCTTTGGAACTCACAGGAACTTTCAAGATGAAAAAGGTGAAGCTGGTGGAGGAGGGCTTTGATCCAGCGCTCATTCGCGACCCACTCTACTTCCTTGATCTAGTTGAAAAGAAATACGTTGCTCTCACTCAGGAAATGTATAATTCAGTGATTGCAGGAGACATTAAACTATAAGTctggaaatgtaaaaatatgagtatactttaaaaatgaaaggttGTTGTATGTGGCCTTGTGAAAAACAATAGCTAATGGTAAACTAGTTGCAGACTAATCTCAGGGAGGAGCCTGGTTTCATCTTTGTCAGTTTTTAATATCCATTGACTAATTCAGTAAACAAACTTTTATGCTGTGAcaatgattaataaaatgtagcaTGTTTGTTTGATCATAATATACATTCTGTTTTATAAGTAATAAATGTACTTATATCATTCAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K08746 SLC27A2, FACVL1, FATP2; solute carrier family 27 (fatty acid transporter), member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177846 lncRNA upstream 61338 17253667 ~ 17255337 (+) True G150152
TU177842 lncRNA upstream 79729 17236641 ~ 17236946 (+) True G150148
TU177389 lncRNA upstream 742803 16540599 ~ 16573872 (+) True G149729
XR_004578660.1 lncRNA upstream 842447 16460380 ~ 16474228 (+) True LOC117597920
TU177373 lncRNA upstream 867535 16446039 ~ 16449140 (+) True G149723
TU178004 lncRNA downstream 107285 17430143 ~ 17434377 (+) True G150261
TU178009 lncRNA downstream 123391 17446249 ~ 17446460 (+) True G150265
TU178012 lncRNA downstream 134062 17456920 ~ 17457135 (+) True G150268
TU178163 lncRNA downstream 379696 17702554 ~ 17702758 (+) True G150407
TU178372 lncRNA downstream 509908 17832766 ~ 17840449 (+) True G150590
XM_026919717.2 mRNA upstream 1433 17298741 ~ 17315242 (+) True cep152
XM_026919718.2 mRNA upstream 1433 17298741 ~ 17315242 (+) False cep152
XM_026919719.2 mRNA upstream 1433 17302851 ~ 17315242 (+) False cep152
XM_026918795.2 mRNA upstream 18455 17291387 ~ 17298220 (+) True cops2
XM_026918787.2 mRNA upstream 32749 17265622 ~ 17283926 (+) False atp8b4
XM_026919689.2 mRNA downstream 97350 17420208 ~ 17423465 (+) True duox2
XM_026919955.2 mRNA downstream 114376 17437234 ~ 17443674 (+) True eif3ja
XM_026919921.2 mRNA downstream 122503 17445361 ~ 17447657 (+) True si:ch73-330k17.3
XM_026920042.2 mRNA downstream 136632 17459490 ~ 17467526 (+) False scamp5a
XM_026920041.2 mRNA downstream 136634 17459492 ~ 17467526 (+) True scamp5a
trnav-aac_18 other upstream 1275428 16041175 ~ 16041247 (+) True trnav-aac_18
XR_004578669.1 other upstream 1494084 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other upstream 1496519 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other upstream 1497102 15807990 ~ 15819573 (+) False LOC113529564
trnar-ucg_5 other upstream 3496013 13820590 ~ 13820662 (+) True trnar-ucg_5
TU178368 other downstream 511379 17834237 ~ 17842535 (+) True G150589
TU178369 other downstream 511379 17834237 ~ 17842535 (+) False G150589
TU178370 other downstream 511379 17834237 ~ 17842535 (+) False G150589
XR_004578809.1 other downstream 1352152 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 1398737 18721595 ~ 18724686 (+) True urahb

Expression Profile