RNA id: XM_034307515.1


Basic Information

Item Value
RNA id XM_034307515.1
length 1574
RNA type mRNA
GC content 0.50
exon number 8
gene id nr2e3
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15888107 ~ 15890739 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGACTCATACACACTTCAGCATCACCAGAGGCAGGATGAGCAGGTGACAGGCCTCACTGGACATTACTTCAGCAACAGGCAACAGGTTCTGGAGAACAAATCAGAGTGAAGTGAGAATTTCATCAGGATTAAAAGACACACTGGAAAAGTAAATCCATTGGAAAGCCAACCTTCAGGAGTCCACTTGAGATCATATATTACCAGACAGAATACATTTTCCAGCAATTTTCAAGTGACGCCAAACTTCTCCTCTACCCTTTATTTAGCTTAATGGAGGATCCCATTTTGAAGATCTCCATGATGCCATCTACATCCCCCACAGACTCCTCTAGGAGCAGCTCCACAGAGGAGAGCCAGGGAGGTAAAAGTCCAGCTCCTGGTAAGAGCCTGAGTCAAGGCCTGCTGTGTAAGGTGTGTGCAGACACTAGCAGTGGAAAACACTATGGGATCTATGCCTGCAATGGCTGCAGTGGCTTCTTCAAGCGCAGTGTGAGGCGTAGATTAATCTACAGGTGCCAAGCTGGTACAGGTATGTGTCCAGTAGATAAAGCCCATCGTAACCAGTGCCAGGCATGTCGCCTAAAGAAATGCCTTCAAGCAGGCATGAACAAAGATGCTGTGCAGAATGAGAGGCAGCCACGAAGCACAGCTCAGGTCAGGTTAGACACCTTGGATATAGATACAGAGAAGGAACACCTAGCCACCACCAGGGAGCCCACATCCTCCTCATCCATTTGTTCTGTGATAAGCAGACCTTTACTGGGCTCCTCCATTAGCTCCAGCATCAACTCCAGTGGCCCTAGCCAGCGCAGCAGCCCCAAGAACAGCCACCGCTTCATGGCCAGCCTGATGACAGCTGAGACGTGCGCCAAGCTGGAGCCTGAGGATGtGGATGAGAATATTGATGTAACAAGTAATGAGCCGGAGACGAGCTCTCCAGAGAGCAACACGTCTCTTTATCCCTATTCTGGCCCTGAGAGCATATATGAGACCTCCGCCCGCCTACTCTTCATGTCTGTCAAATGGGCAAAGAATTTGCCGGTCTTCTCCCACCTGCCATTTAGGGACCAGGTGATATTGCTAGAGGAGGCATGGAGTGAGCTATTCCTCCTCTGTGCCATCCAGTGGTCCTTGCCGCTGGAAAGTTGCCCCCTGCTTTCTCTACCCGAGCTGTCTCCTCCCTCACAGGGTAAAAGCAGTCCCTGTGCCTCTGACCTGCGCCTCCTGCAGGAGCTCTTCAGCCGCTTCAAGGCTCTGCAGGTGGACCCTACGGAGTTCGCCTGCCTGAAAGCAATAGTTCTCTTCAAGCCTGAGACAAGTGGCCTCAAAGACCCAGAACAGGTTGAGAATCTACAAGACCAATCTCAAGTAATGCTTGCTCAGCATATTCACACACTCTACTCCAGTCAAGCAGcaagGTTTGGGCGGCTGTTGTTGCTCCTTCCCTCTTTACACTTTATAAGTTCAGAGAGGATCGAATTGCTCTTCTTCCACAGAACTATTGGAAACACACCCATGGAGAAGTTGCTCTGCGACATGTTTAAGAACTGAAAATCACTTGATCTTAGGCACA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08546 NR2E3, PNR; nuclear receptor subfamily 2 group E member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176828 lncRNA upstream 69739 15771838 ~ 15818368 (+) True G149276
TU176815 lncRNA upstream 133195 15754665 ~ 15754912 (+) True G149268
TU176798 lncRNA upstream 163016 15721348 ~ 15725091 (+) True svip
TU176794 lncRNA upstream 176190 15711013 ~ 15711917 (+) True G149248
TU176640 lncRNA upstream 318620 15567836 ~ 15569487 (+) True G149131
TU177010 lncRNA downstream 134105 16024844 ~ 16026512 (+) True G149427
TU177011 lncRNA downstream 136868 16027607 ~ 16028019 (+) True G149428
TU177169 lncRNA downstream 363945 16254684 ~ 16255314 (+) True G149552
TU177191 lncRNA downstream 437517 16328256 ~ 16328539 (+) True G149574
XR_004578685.1 lncRNA downstream 447851 16338590 ~ 16341963 (+) True LOC117597940
XM_026919672.2 mRNA upstream 5935 15874863 ~ 15882172 (+) True hexa
XM_026919874.2 mRNA upstream 46600 15832179 ~ 15841507 (+) True sigirr
XM_026918826.2 mRNA upstream 65516 15807990 ~ 15822591 (+) True LOC113529564
XM_034307166.1 mRNA upstream 65516 15807990 ~ 15822591 (+) False LOC113529564
XM_026918674.2 mRNA upstream 135581 15751139 ~ 15752526 (+) True fancf
XM_026918758.2 mRNA downstream 914 15891653 ~ 15895454 (+) True stoml1
XM_026919885.2 mRNA downstream 6937 15897676 ~ 15905329 (+) True LOC113530122
XM_026919989.2 mRNA downstream 77804 15968543 ~ 15980245 (+) True stra6
XM_026919523.2 mRNA downstream 114931 16005670 ~ 16008823 (+) False commd4
XM_026919524.2 mRNA downstream 114947 16005686 ~ 16008823 (+) True commd4
XR_004578669.1 other upstream 65516 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other upstream 67951 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other upstream 68534 15807990 ~ 15819573 (+) False LOC113529564
trnar-ucg_5 other upstream 2067445 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_003403080.2 other upstream 2112924 13761334 ~ 13775183 (+) False ces2b
trnav-aac_18 other downstream 150436 16041175 ~ 16041247 (+) True trnav-aac_18
TU178368 other downstream 1943498 17834237 ~ 17842535 (+) True G150589
TU178369 other downstream 1943498 17834237 ~ 17842535 (+) False G150589
TU178370 other downstream 1943498 17834237 ~ 17842535 (+) False G150589
XR_004578809.1 other downstream 2784271 18675010 ~ 18683428 (+) False rfwd3

Expression Profile