RNA id: XM_026919794.2


Basic Information

Item Value
RNA id XM_026919794.2
length 1807
RNA type mRNA
GC content 0.46
exon number 10
gene id neil1
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16009837 ~ 16014155 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGACTGCTGATACGCGAGCCTGTGGAGTCGAGCGCAGGAACTACACCTCCCATCAATCCACAGTTTCCGCTCTGTAAACATGGCGGTGTTTTGGACAACAGCGTGAGTAAAGTACAGTAGCGTGCCACTAAACAAAACTTTCTGCTCCTTCATACCGACTACAGCTATTACAGAAACTGTACCATTGTGCAACAACTTGGATCGAATCTTGAATCTTTTTATACCATTATATTACGAGTTAAGGAACTGCCCTTAAAGCCAAACTCCACCTGCCGTTTCTTTGGAGTTTCTTGGCCTCTTCTGAGTACGCTACTAGCATCCAGTTTATCTGCACAGCGTCCACAGCGCCATGCCCGAGGGCCCTGAGCTGCACCTGGCCAGTGTGTTTGTGAACACAGCATGTGCTGGGCTGATTTTCTCCGGCGCTGTGGAGAAGTCTGAGGTGAGTAAAGAAGCCGAGGTGCCGTTTGCCAGCGATGCGTACCGAATCAGCGCCACATCCAGAGAAGAAGTGCGGCTCACACTCACTCCAGTCAAACCTGACACACGGAGTAAAGGCAAACCAGAACTGAACCACGCGCCTATGGATGTGGTCTTCCGGTTCGGGATGTCAGGTTATTTCCGCTTCACTACGTTAGCAGAACTCCCTAAACATGCCCATCTGCGCTTTTACACCAAAGAGGTTCCTCAGAGAGTGCTGAGCTTGGTCGATACGCGCAGGTTTGGCAGCTGGCAGCCTAATGGAAGCTGGCAAAAAGACCGAGGCCCCTGTGTCATGTCTGAGTATAAGAGCTTCAGggAGAATGTTCTGTCCAATTTGTCAGACAAGGCATTCGACAGGCCAGTCTGTGAGGCTCTCTTAAATCAGAAATACTTCAACGGGATTGGCAACTACCTCCAAGCAGAGATTCTGTACAGATTAAAGATCCCTCCCTTTGTGAAGGCGAGAGCTGTGTTAGAGGGACTCAAACTAAAACATGAAGAAACAATGAACGTTAAAGAGGAGCCCAGCACAGAGGCGGCAGAGAAAACAGATGTGGATGAGAAAACTGAGAATCCagacctcctctctctctgtcacacggTACCACTTGAAGTGATTAATCTGGgtGGAAAAGGATATGACCCAGGGAAGGGAGATTACACAGAATTTGTTTCCTGGCTGCAGTGTTACAGCGTTGATGGGATGAATTCAGTAAGAGACCACAATGGAAGAACTATGTGGTTTAAAGGTGCTCCTGGTCCAATGGCCCCTAAAGCTTCCAAATCTCCCAAggcaaagagaaaaataaagaaagatgaCTATACAGATACAAAGAAGGAAAAGCTTGTAAAGAAGGAACCAGGGGCTGGAAAAAGGGAGAAGGATGAGCCTAAGAAACAGAGTGGCACCAGACGGCAGAAAGCCAGCAAGAGTGGACTAGAAGCAGAAGCAGCTGATGACAGCAGAAGACCAAATACACGCAGAAAGAGTAGCGCAACAGGTCTAAGGCAAACCAGAGCTAAGAGTACAGGAAGCCCAAGTGTACGGAAAGCTAACACTAAATCTAAGGCCACCAGCAGACCTCGCAGGAAGAGCAGTAGAACTGCTTAAGggcagtttgtaaaaaaaaaaataataatttcatgaCTGCTGGATCAAGAGGCaactgtctgtatgtatgtaaatactAAGCTGTAGAGGGGCAGTTAATAAGCAAATCTAGCCATGCACATCTGGTTCACATCAGCTATTGCTTGGAATAATCaccattttatatttgtaacacatttatctgaaaaataaatatattatatataagttTC

Function

GO:

id name namespace
GO:0005488 binding molecular_function
GO:0004518 nuclease activity molecular_function

KEGG:

id description
K10567 NEIL1; endonuclease VIII-like 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176828 lncRNA upstream 191469 15771838 ~ 15818368 (+) True G149276
TU176815 lncRNA upstream 254925 15754665 ~ 15754912 (+) True G149268
TU176798 lncRNA upstream 284746 15721348 ~ 15725091 (+) True svip
TU176794 lncRNA upstream 297920 15711013 ~ 15711917 (+) True G149248
TU176640 lncRNA upstream 440350 15567836 ~ 15569487 (+) True G149131
TU177010 lncRNA downstream 10689 16024844 ~ 16026512 (+) True G149427
TU177011 lncRNA downstream 13452 16027607 ~ 16028019 (+) True G149428
TU177169 lncRNA downstream 240529 16254684 ~ 16255314 (+) True G149552
TU177191 lncRNA downstream 314101 16328256 ~ 16328539 (+) True G149574
XR_004578685.1 lncRNA downstream 324435 16338590 ~ 16341963 (+) True LOC117597940
XM_026919523.2 mRNA upstream 1014 16005670 ~ 16008823 (+) False commd4
XM_026919524.2 mRNA upstream 1014 16005686 ~ 16008823 (+) True commd4
XM_026919989.2 mRNA upstream 29592 15968543 ~ 15980245 (+) True stra6
XM_026919885.2 mRNA upstream 104508 15897676 ~ 15905329 (+) True LOC113530122
XM_026918758.2 mRNA upstream 114383 15891653 ~ 15895454 (+) True stoml1
XM_026918866.2 mRNA downstream 31420 16045575 ~ 16048154 (+) True si:dkeyp-73b11.8
XM_026919968.2 mRNA downstream 34929 16049084 ~ 16060168 (+) False usp3
XM_026919969.2 mRNA downstream 35236 16049391 ~ 16060168 (+) True usp3
XM_026918890.2 mRNA downstream 46933 16061088 ~ 16066983 (+) True fbxl22
XM_034307478.1 mRNA downstream 78917 16093072 ~ 16106147 (+) True LOC113529940
XR_004578669.1 other upstream 187246 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other upstream 189681 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other upstream 190264 15807990 ~ 15819573 (+) False LOC113529564
trnar-ucg_5 other upstream 2189175 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_003403080.2 other upstream 2234654 13761334 ~ 13775183 (+) False ces2b
trnav-aac_18 other downstream 27020 16041175 ~ 16041247 (+) True trnav-aac_18
TU178368 other downstream 1820082 17834237 ~ 17842535 (+) True G150589
TU178369 other downstream 1820082 17834237 ~ 17842535 (+) False G150589
TU178370 other downstream 1820082 17834237 ~ 17842535 (+) False G150589
XR_004578809.1 other downstream 2660855 18675010 ~ 18683428 (+) False rfwd3

Expression Profile