RNA id: XM_034307590.1


Basic Information

Item Value
RNA id XM_034307590.1
length 2811
RNA type mRNA
GC content 0.47
exon number 14
gene id ice2
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16547325 ~ 16566002 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTgtattggatttaaaaaaaaattctgctatGTTTTCATTGTGCAGTTTTGGGGTAACTAAAgATGAAAAAGCTGATGTGAAAAAAGACACAAAGGTAAATCCAGCTGCTCACGCCTCACAATCCAGTCGTGCCAAAAGTAACAAAACCACGCCACAGACCAACATCAAACATGGCCACGGAACTTCAGACTGCAGAGAAGCTCTTCCTGAATGTAAGAATAAAGTTGCTGAGACTATGGAAGAGATATGCTTCCCTACACCGAAAGTGCCCTACCCCTGCTTCTCCTCTCTCAGCCGCAAAGAAAGAGTGATGCATATATACTCCATTAAGAACAACAAGCAGGACAAAGCTCCACAGaatttaATAGAGAAGGTGAAGAAAGAGGTGGCAGAGTTTATGAAGTACCTGCAAGATGTCTCTAAAGTGTGCGCTGATGATTATAACTTCATGCCCATGGGAGCTACTCACTATTCAGAGGAGTATTTTAAACATTGCTTGGACCACATGAGGAACTACCCACAGGTTTACAGTATTCAAGAAATCACCAGTTTAACAGGGGGGAAATTTGTCCCCGACATTTCGCTCAACTTTGAGAAACGGCTGCTTGCAATGGGCACCATAGACATGGTAGAAAAACAAATGCTGccagaaaacacacaacttGCAATGGATTATGAGTCCATTTCAGCTGTGAATCCTCCAGTTAAAAAGGCCACTCGTTTCCACACAccTATCAGCAGTGACACAAATGCAGAGAAGCTCAGTGCTACATATGAGCCACATGTGTGTCTAGCGAAAGAGGCCTTCCTTCAGCTGCTGAACAACAGTGTTGGGTTTACTGAGGCATGGGAACTGCCGGtctgtgtgaaagcaaaccCTGCAAAAGGTAGCACTCAGAGTAAAACGGTGTACATCGACCCTCCTCTGCTGAAGACAGAGatgacatggagagagagaaatcaccTCTTTCTTGAGGAGAGTGTAAAACTGGCATACAAGAAGACAGGCTCAAACCCTGTGTTTTTCCTCACATCAGAGGACTACTGCAATAGGACTGACTTCGCCACAGCAGAGGCGAGCAGTAGACCAGTTGTTTCATTTGACAGCACTGATATAGATTTTGAAGCAGATTTGACCGACTTGGAGTCATTTGGGGAGTCTTGTCAACTGAAAAAGAAAGTCAAGGACAATGATTCGAAAAATCAAGCACCCTCTAAAAGTGAAACACTGGGATTATCAAAACCTAAAGTAGAATTAGATAAAGGCAAAACCTCACACAAATTACCTGAAGAAGCTTCCCCACCTAAAGACATTATATCAGCACTTTCTACACCAGCAAAGGAAGAAGCGCAAGATGAAACAGCCAGGGCGAGTGTAGAGGACAGCTCAGTGGATGAGAGTGCTGAGACTACTTTGAATTCTGTATCTGAAGAGGATCCTTTGAGCTCTACTGTAGAAGAGACCGCAGAATGTACACCAACCAAGCGACTAAGGCATTCCTCTGTAAACACAGATTCTGATGAGGAACGCCTCATTATTGATGACCCAAGCTCCCCACTGAGCAGCGTAGCAAGTAAGAAGAACCAGGTGACACCAGCAGCTCCGGAGAACTTCACTGACCCCAACACATCCTCTGTGAGTGAGCTGAATGTGCTCCTAAGTCCCAGCAGCTCTGCTAAAGGAGCTAAGAAAGGAGCCAAGAGACCCAGAGTCTCGGCGGATTGCGACCAGCTAGGGCACATTTTGCGAATGCAAAATGCCATGCTGAAATCCACGACGGCTAAAAGCCAAGAACCTCCAAAAGCACCAGCTGCAGACTGTCGTCCACCAGAACCAAAACCCAACCACCAAACTGTGTCTCTGGTCAAACCTAGTGTGTCCTCGTACCTGGACTTGGAACACAGAGAAGGGCTGCAGAATGAGCCTGCTGCTCCTGCCACCTCTCAGCCCACAGCACAAAGAAAAAGGCTGCTGAGAGAGGATCTGCTGGTGAGTGCCGAGGATGAGGAGGACTATGAAGCTCCTGAGGAGGGCAGTGTACTGTATAAACTCTACAGCCTGCTAGATGTGCTGCTGATGGTGCGCAGCACTGTGTCCATTGCTCATCCCAGACATGACCAAGAAACTTTCAGGGCGGTCCCTGTGCATGTGCTGCCCAAGCTGGAGTACCAGCTGTGTTACGGAGCCGAGTGTCTGACCCATGCTGAGGCCTGCCAACTGTGGGCTGAGCAGCAGCTTCACTCCAGCACGGTATCTTTCATAGgtcggATTAATGCACACACATCAAAGATTGTGCAGCTTCAAGAGCTCAAGCCTGACTGGATCCAGAGCACCTCCTGTGATTTCAAACCAGCTAGGTGCTTGAACACTCTCCACCACATACTGAAAAAAGTCATGAGCTTACAAGAGGGGAGATATCTGTTGGGTCACAAATCTGGCGAGGCTTTTTTAACCATATTCAAAGCTAGTGATGGAACAAAGCCCACTCGCAGTGTCTGTGACCTCCAGGCTGTCCACTGTGGACCTCCTGTAATCCCAGAGGCCAAAATCCCCTGGGTTCCAGTGGATCCCTTCGTTCTTATGCCGTTTCACAAGAAATACTGTAGACCTCCGTGCACCTTCCCTCCACGTCCACCCACACAGCCTAAGGCAGGAGGGTGTAAAGGAGCAAGGCTGGGTAACAGCATGACTGCATCTGCACAAGGGTGGCAAGGCTCAGCAGGGACGCCGAGTCAAAAGCGGaagaaaaagaatagaaaaaaaaaacaacagacaaataaaaacacatgtacAGAATGAAGAAGGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177511 lncRNA downstream 48864 16496171 ~ 16498461 (-) True G149841
TU177505 lncRNA downstream 86280 16460791 ~ 16461045 (-) True G149836
TU177366 lncRNA downstream 122721 16422666 ~ 16424604 (-) True G149718
TU177254 lncRNA downstream 229399 16309890 ~ 16317926 (-) True G149632
TU177277 lncRNA downstream 291839 16254647 ~ 16255486 (-) True G149649
TU177528 lncRNA upstream 50181 16612984 ~ 16614416 (-) True G149854
TU177779 lncRNA upstream 456153 17018956 ~ 17019183 (-) True G150089
TU177718 lncRNA upstream 465314 17028117 ~ 17042478 (-) True G150036
TU177721 lncRNA upstream 465314 17028117 ~ 17052512 (-) False G150036
TU177720 lncRNA upstream 467753 17030556 ~ 17042478 (-) False G150036
XM_026919690.2 mRNA downstream 1055 16540852 ~ 16546270 (-) True anxa2a
XM_026918976.2 mRNA downstream 88930 16443455 ~ 16458395 (-) False bnip2
XM_026918892.2 mRNA upstream 4492 16567295 ~ 16800368 (-) True roraa
XM_026918893.2 mRNA upstream 4492 16567295 ~ 16630301 (-) False roraa
XM_026919726.2 mRNA upstream 325534 16888337 ~ 16890007 (-) True c2cd4a
XM_034307204.1 mRNA upstream 490550 17053353 ~ 17058867 (-) False LOC113529460
XM_026918652.2 mRNA upstream 490550 17053353 ~ 17058864 (-) False LOC113529460
XR_004578830.1 other downstream 555231 15990080 ~ 15992094 (-) False islr2
XR_004578773.1 other downstream 1319293 15220972 ~ 15228032 (-) False LOC113529695
TU176301 other downstream 1459309 15086123 ~ 15088016 (-) False dynlrb2
TU176092 other downstream 1734620 14810004 ~ 14812705 (-) True G148647
TU175596 other downstream 2714436 13825897 ~ 13832889 (-) False LOC113529512
XR_003403120.2 other upstream 190373 16753176 ~ 16753281 (-) True LOC113530224
TU177725 other upstream 490563 17053366 ~ 17058906 (-) True LOC113529460
XR_003403060.1 other upstream 1191581 17754384 ~ 17760039 (-) True LOC113529452
XR_003403059.2 other upstream 1643350 18206153 ~ 18214487 (-) False fnbp4
XR_003403119.2 other upstream 1741835 18304638 ~ 18304801 (-) True LOC113530223

Expression Profile