RNA id: XM_026919885.2


Basic Information

Item Value
RNA id XM_026919885.2
length 2933
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC113530122
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15897676 ~ 15905329 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctctctctctctctctctctctctctgtctgcttccAGCAGTTCCTGAAGGCACAGAGAAACACATGTAAGTAGCCTATCTGTAATAAGGCACAGGTGAGAAtcctccacctcctctccgTCCCTAGCCAACCCTCGGCCCCGCCTCCGCTGCCACAGTGAGAGATAGAAAAGAGAagtgtgactgagtgagtgggtatgtgtgtgatggcgGTGAGGTACACAGCTTGGAGCGGTTCTTTGGCTCGATCTCTAGCCATAATGGAAGGACCAGGCCAGGTAAGAGCCTGCCACAGCGGGAGCATGCCTGTTGCAAGAGATACACTATTTCCAGCAAGCAGCTCCACTGTCAGGCCCTTCAGTGAGATTCCTGGAATGTGGAAGAACAGCATGGGGAACCTCTACACCTTCTGGAAACTAGATGGATTCAAGAACATCCATCACATAATGGTGCATAACTTCAACACATTTGGGCCCATCTACAGGGAGAAAATCGGGTACTATGAAAGTGTGAATATTATCAACCCTGAGGATGCTGCCATCTTGTTCAAAGCAGAAGGTCACTACCCTAAAAGGCTCAGAGTGGAACCTTGGACCTCCTATCGGGATTTTAGGAACCGCAAATATGGTGTTCTTCTGAAAGATGGAGAGGACTGGCGATCCAACAGAGTCATTCTGAACCGGGAGGTAATCTCGCCGAAGGTGCAGGTGAATTTTGTGCCATTGCTGGATGAGGTGGGCCAGGACTTTGTGGCTCGGGTTCATAAAAAGATTGAAAGAAGTGGACAGAACAAATGGACCACAGATCTGTCCCATGAACTCTTCAAGTATGCACTGGAATCTGTGAGTGCAGTATTATATGGTGAACGTCTGGGGCTGCTGTTGGATTACATTGATCCAGAGGCTCAGCGCTTTATTGACTGCATCACTCTCATGTTCAAGACAACCTGTCCCATGCTGTACATCCCCCCTTCACTGTTACGGCGACTTGGAGCCAAAGTCTGGAAAGACCATGTGGAAGCGTGGGATGGTATTTTCAACCAGGCGGACTACTGTATTCAGAACATCTACAGGAAACTAAGGAAGGAATCTGGAGCTCAGAACAAATATCCCGGAGTGCTAGCCAGCCTTCTTATGCTTGACCGGCTGTCCATTGAGGAAATCAAGGCCAGTGTGACTGAACTGATGGCTGGAGGGGTGGACACTacGTCTATCACCCTCCTCTGGACTCTCTATGAATTGGCTCGGCACCCCGACCTCCAGGAGGAGCTGAGGGCAGAGGTCATTGCAGCTCGCACTGCCTCAAAGGGAGACACAGTGCAGATGCTCAAAATGGTGCCACTGCTCAAAGGTGCTCTGAAAGAGACACTCAGGCTACACCCTGTAGCAGTAAGCCTGCAAAGATACATCACTCAAGATGTAGTGATCCAAAATTACCATATTCCATCTGGGACATTAGTGCAGCTGGGACTGTATGCCATGGGCAGAGACTATCGCATCTTCCCCCGACCAGAGCAGTATCTGCCCTCTCGCTGGCTGAGGAATGAGAGCCACTACTTCAGGAGTTTGGGCTTCGGCTTTGGGCCTCGTCAATGCCTTGGGCGCAGAATTGCAGAGACAGAGATGCAGCTCTTCCTCATCCATATGTTGGAGAACTTCAAGATTGAGAAGCAGAGACAGCTGGAAGTGAGGAGCACGTTTGAGCTTATACTGATCCCTGAGAAACCCATTTTGTTAACTATAAAGCCCCTACTATAAAGCAGTAAATGATAAACTCCTTCCAGAAGGTAATGTTTTAaccattaattaattactaCGAACTATTTCTAACATTGGAAACACATCAagagttaaaaaataaacacggACGACAAATACTGTAcgtaaatgcatttaattttattgtaagaCATGTTTGCTCCTAATGTATTTCTTTGCTGTCTTTTCTTGTTTATACTgcataaaacaacattttaaatactGTGATGTTGAATCAGGTTATTTAAGGGTGTCCAGCTGCTTATGACATATGTGTCCCAAAATGGAGTCTGAAacagttttctttaaataatcaaagaggaaaaaacaatgtTACACGATGTTACTCACTTCAATACCATCATCATATAGCAAGTACTATTTACAAAATACatgtctttttatatatttattgaatttttaagTATTAATTCTTGTGTACTGACCAGTGGCAAGTGATGCAAGGTGGATGTACGTGCAAATCCATGATTGTATTCACTGAGTCTGGTCAACATGTCCTGCTTTTCTTTCCCCCACTGCCTGGCGTTCTCCTCCAGCTACAACACAAAACCGACCCAGCTCTCAGAAGATGGAATTTCGACATTTGTATCCTCGTTAAAGTTAGCTACTCTTTTTAGAAACGCACCTGTTTGCCCAAAGTATGGATGCAGACCTCTGCTCTCTCTAGCTGCTCTAACAGTCTGAGCTTCTCACTGTCTGCAAAAGGCTGCTGGATTTTAATAGAACAACACATACAGCATATTCACTTATTAATTGACTTAGGGGGTTAACACTTATTTTATGAGAAATTTTGAGGTATTTTGCAATAATTGCAATTAGTTGAGTTGCCCAAGACATCTGTCGGACACtgtaattatgaaaatgttttattgagaGATCAATTATTTTTACTTCATGGAGTTTACTAACTGCTTTTCCTGTGTAATGACTCAAGAATTGTGACACTATGCTTGTAATCTCGTTAACTTTATATAGCCTAATTTTAAAAGAGTATGATCAAAGGTTATGAATTCACCATACCTGCTATATATATAGCCTTTTGGCATTAGCACTAACAATGTGAATGGACAATCTGAACACTGTTCAGTGACTTCagtgtgtaggtttttgtgttcaatttattaaatcatttttggcCAAATGGTATCACAGTC

Function

GO:

id name namespace
GO:0008203 cholesterol metabolic process biological_process
GO:0008207 C21-steroid hormone metabolic process biological_process
GO:0006694 steroid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0031966 mitochondrial membrane cellular_component
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function
GO:0008386 cholesterol monooxygenase (side-chain-cleaving) activity molecular_function

KEGG:

id description
K00498 CYP11A; cholesterol monooxygenase (side-chain-cleaving)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176828 lncRNA upstream 79308 15771838 ~ 15818368 (+) True G149276
TU176815 lncRNA upstream 142764 15754665 ~ 15754912 (+) True G149268
TU176798 lncRNA upstream 172585 15721348 ~ 15725091 (+) True svip
TU176794 lncRNA upstream 185759 15711013 ~ 15711917 (+) True G149248
TU176640 lncRNA upstream 328189 15567836 ~ 15569487 (+) True G149131
TU177010 lncRNA downstream 119515 16024844 ~ 16026512 (+) True G149427
TU177011 lncRNA downstream 122278 16027607 ~ 16028019 (+) True G149428
TU177169 lncRNA downstream 349355 16254684 ~ 16255314 (+) True G149552
TU177191 lncRNA downstream 422927 16328256 ~ 16328539 (+) True G149574
XR_004578685.1 lncRNA downstream 433261 16338590 ~ 16341963 (+) True LOC117597940
XM_026918758.2 mRNA upstream 2222 15891653 ~ 15895454 (+) True stoml1
XM_034307515.1 mRNA upstream 6937 15888107 ~ 15890739 (+) True nr2e3
XM_026919786.2 mRNA upstream 6937 15888107 ~ 15890739 (+) False nr2e3
XM_026919672.2 mRNA upstream 15504 15874863 ~ 15882172 (+) True hexa
XM_026919874.2 mRNA upstream 56169 15832179 ~ 15841507 (+) True sigirr
XM_026919989.2 mRNA downstream 63214 15968543 ~ 15980245 (+) True stra6
XM_026919523.2 mRNA downstream 100341 16005670 ~ 16008823 (+) False commd4
XM_026919524.2 mRNA downstream 100357 16005686 ~ 16008823 (+) True commd4
XM_026919794.2 mRNA downstream 104508 16009837 ~ 16014155 (+) True neil1
XM_026918866.2 mRNA downstream 140246 16045575 ~ 16048154 (+) True si:dkeyp-73b11.8
XR_004578669.1 other upstream 75085 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other upstream 77520 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other upstream 78103 15807990 ~ 15819573 (+) False LOC113529564
trnar-ucg_5 other upstream 2077014 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_003403080.2 other upstream 2122493 13761334 ~ 13775183 (+) False ces2b
trnav-aac_18 other downstream 135846 16041175 ~ 16041247 (+) True trnav-aac_18
TU178368 other downstream 1928908 17834237 ~ 17842535 (+) True G150589
TU178369 other downstream 1928908 17834237 ~ 17842535 (+) False G150589
TU178370 other downstream 1928908 17834237 ~ 17842535 (+) False G150589
XR_004578809.1 other downstream 2769681 18675010 ~ 18683428 (+) False rfwd3

Expression Profile