RNA id: XM_034307403.1


Basic Information

Item Value
RNA id XM_034307403.1
length 6667
RNA type mRNA
GC content 0.44
exon number 23
gene id ticrr
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18659641 ~ 18672052 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAACAAGCATTTGTCTACTCTTCATATTGGTCTGTGTATACTCATGGGTTGCAGTTTGCGGTAAAATGAATGACGCAGTGGAACAGACGCCTCAGCCAATGACAGCTCGAGTTTGGAAAGTCAACTCTGAAGCGCCAAGTGTTTGAGCTCGGAGAATGAAGGAAAATGGCGATTTGAAATCGTATATGTTATAAATGGTGCttttaatgtaacattttattCCTAGTCCGTATATTTCGGTCAGTGGGGACGTTAAAAAGTCGGTTTCATGACAGTTCGTGGTAAATGTACACCTTCAGATACTTTACAACAAGTTAGTTTTGTTTGAGTTTGTTTAGCTACTGTGCTAATACTAACATAAGGTTAGATGTTGCTAATGGGGCAAGTCACCTAGCCTGCTAAGTAAACTAGCTTGTTATTGAGAAAAAACAGTCATGCAGTCTCCATTTGTATATGTGTTTTGTCGAGCCAGACTGGGCCCGGATGCGTAGATTTAAccaatactattattatttaacattattaatgcaTTTCGTACCAGTGAATGATGGCTGCTCATGTTGTTTTTGCTATCGATGTGGACTGTCGGTCTGAAGAGCTCAACCTCCCAAGAGACTTGTATCTGAGTTCTTTAAAGCAGTGGATATTAAAAGTTCTGCTTTCCTTGGGTAGTAAGTATGGTTTCGAGAACGTGAGATGGGGTTACAAGTTTTTCCATTCAAGAACTGTAAAAAGTGCAAGTCTCATAACAAGAGGTACAGATTTCAAAGAACTTCAAGAGAAAGCCTTCAGCGAGTTTGAGGGGGAATTAGTCCATAAAGTTGGTGTCAAACAGAAATCCTCTGATGAGCAGCACAGACTGCGACCGAGCCCAGCGATCTGTGTCCAAAACACACTAAAGGAGATCCTTTTGGACTTCCAGTGGGACAGGCCAGACATGACTTCTCCCACGAAACTCTCACTGCGACCCAGGAGGTCAACCAGGAATGCCGCAAATATTCCCTTGGCAGATGATGATATTTCATGCCAAGGAaaaaatgttgtgtttgtggTCTCAGAGTGTCCATATTCCAGAAGAGAGGTGATGGAGTTTTTCCAGCTGTCCAGCAGTAACATTGCAAGTCAGAGGGATTTACCTGAGCTTATTCTACCAAAGGGTCTAATAGACATGCTAGTTCATCGGAAAGTTGCCCTGCACTGGGCCGATTGCAGTTCTTGTGAGGTTAATAATGAGGCCGATGACTACACCGGCTTGAAGACCATCATGGAGGCGCTGCAGCCAGTAGCTGGAAAAGTGATTCCCGTGCTCGCCCCTGGTATGAACCTGAAGCATAAAGATCCTAACTCGAGCCCTAGGGACAACAAGAGAGTACTTGCCTTTCCAACTGGCTCAAGTACAGGATACATTTTGTCCTCTGAAAAGATCTACAAGCGAGCCTTTCCAGCTCTCATAGGAACGCTTTGCTGGGGTGCAGATGAGGACAAACAGACCTGCAGTGTTTTGCTGGAGCCTGTGTCGTGCAGACAGAGGCGTCTGTGTGCTCCTGTAGAGGTGACTCTCAGAAGTGTGCTGCACGGCCTGGACACCTGCCGTCTCAGACAGTCAGCTTCAGAGTGCTGGGTCCTGTTTTGCCCACAGAAATCAGAGCAAGATCAATTTGCTTTTCAAAGTCTCTTCAAGGAGCTTTTCATTCTAGCTTCTGACATGCTAGCAGAGGTCAGTGAAGGTGGTCAGGTCCACTCTGCAGTACTGTCAGTATTGTCCTCCAATCTGGCTCTTCTGACAGTTCTCCACAGTGAGGAGGCTCTGAGTACATGCCTTGTTCCCTCAGAAACAGCAGACCTTCCTGACACCTCAGACCTACCTGACATTGTCAGTAGTGTTCTCAAAGACGTCATGAAAGAGGAAGATACCTCAGAATGTCCACATCACATTCCTGAATGGGCAACTCAAGAGCTTCAGCAGTGGACTAATCTAACAACAGAGCTTGCAGAGGGCTGGTTTCCTCTATCTGACCAATCTGGGATTAGTTGCCATTTGATGGAGTCAATGAgGCTTCTGCATGCTGCTCCAGAGGAGCAAGAACAAACAGAAGTTTCCAGTCAGGAGCAGGAGCTGACAAACAGCCTAGCAGAGCTCTATCAAAACAATAAAGACGGACCCAGCAGTGGCTTGAAAGGCAAAAAACGAGGTACTCAGCGTACACCAGTTCGCCAGAAGATGAAGACCATGAGTCGCTCTTTGCAGATGCTGAATGTTGCTCGCTTCAACGTAAAAGCACAAAAGAGTCAGACAGAAACAGACTCTTCCAGCACTGCCAAAGGCACAGAGAAGCGAGGCAAGAGATGCTCCAGTGAAAGGACCAGACCTGGTCCCATGCattttaaaaatgaagaggAACTGCTTTCCCATTTGAACCTGAGATATCAACAGGCTGTTGAGGACAAAAGCGTCGCTCTCATCACTCAAGTGCAGGACCTGCTCTCAGTGGTGGAAACCTTCACCAAAAGTAACGTCAATACAGGGGCTTCATTCTTAAATATAATCAAGAAGAACCTCGTAAAAAGCACCCAGTCCATTCGTCAGCTCTATGGAAGTACTGCTGATACTGAGAGTAAAATCAGAGATTGTCAGCTACAAGTAGTTCTCAGCCTTGAGCTGTGCAAACTGCTGTCTTCAGATGATCAAGATCATGTGGAGCAGATGGTGGAGGAGGTGGCTGGAATGCTGCGGGTGATATCTTTGACAAAAGATCCTGTTTACTTGTCAAAGTTCATGCAGGAGGAGGTTTTGCCATTGTACCTGACTGGCATACCTAAGGTCCTGGCAGACGTCTACCACAGTCTTGGCACCCAGCTGCCCGAGGTACTTGTTGCAGTCCTGCCTGCTGATTTTTTTAGTGATGACTCAATGGCAAAGGAAAGTGTTTCAGTAAGCAGCTCACCAGTGTCAGCCACACAGAGCCTGGTCTCCAGTGTTGGAGACCGGCTTGAAGAGTTACGCAATCGCTCTGCTAAAAAGAGAAGAACCAGCATGCTTACACGTCATAAGAGCATGACGGAGGCCCCGCAGATCCGGCAAATAGAGATGCCCAGGAAATCCACGAGACAAGCAAAACCAAAGGAATGTATTCCTCAAGAAAAGCTCAGTGTAGGAGGCCAAccaactcaaaaacaaacagttcaaGAAGTGACAAAGGTGAGGAGAAACCTCTTTAACCAGGAGATAATGTCGTCCTCAAAGAAAGCAAAAATGCCTCGGAGCCAGTCTGTATCAGCAGTAGATATAATGAAGAAACGGAAACGATCACAAAAGGAAGATGGACAACACACTTTACTAACAAAAAAAGTATCCGAGACCCCCCTGCATAAGCAGGTATCAAATCGTCTATTATATAGACAAAGGAATAGCAGGAATTCTGGAGACACTGATATGGTCGTTGTCGAGGAGTCTCCAATTAAACCTGCTACGGATTTGAGGAGGAGTCCTAGAATAAAAAAACTTGCAAGGAGACATTCTAGTGTCTTCTATTCAAGTTCACAACCACGATCTCGAAATTTGGATAGAGCCTTGTCCTCCTCACAGCTCCCAGTCTCTGAAAGTAAAGTTGTAGGTGGTATTAATATTAAGGCTGTTAAGTCACCAATGAGACTTCTTTTTGGTGCTGCTGAGTCCCCCGCTCGCCCATCTACGTCCAGATCAATCATTAGAGACGCTGAAGTTGATCGGCTTGGGTCTACAGATTCTGTCTTTGAGaattGCAATAAAACTCCAAGAAAATCTCCACACAAACAGCTTGGTTCTGCAGTTGGGAGCAGAAGTCCCAGGACACCCAGTTCTTCCTCCAAAGCTCAAAGCTGTTTCTTCCCTAAGAGCCCAGGCTGTGCTGTTGGAGAGAGCACTATGGTCCTCCGAGGAAGTCCATTTAGATCTCCTGCTTCAAAAAGTTTAGTGCTGGAAACACCAAAGAAAAGCCCACTGAAGGGTATTCTTAAAACCCCTGTGAAAAGCTTTATGGAATGTGGGTCCCCTTCTGGCCCCTCTGTTAGGAGCCCCAACATGAGAACCCCAAGGAAAAGTGTGACTTGGTCTCCATCTCCATGGAAAGGATTGCCAGAACAACCATTTAAAGTCCcagattctccagtttcctctatTAGATATTCCCCAAGATTGATCACACCAAGCAAACTTTGCAGAGATCAGGGTGATATTTTCAAAACTCCTGAGAAAGCTAGTCAACAAAAAAGCAAGGTGTCCCCAAAGACAGCACAAAGACTATCTGAAATTATTAGAAATGTTGGCATTGAAGAACCCCAGCTGAGCCAGAGGTCCGAGAAAATTAGAAGAACGTTAAGTTTGCCAGAGAAAGGTGACCCACAGAGTCCAAATATTCTTTCCTATGATCATCCATCACCACCAACACCAGGAATAAAAACACCAAGTAAAAGCCCTGaaccaacacacacaatgtgtacTCGTTCTGGAAGAACACCTCTTAAACATTCCTCTACTCTGCCTCTTGACAAAGCTAAAGGCCTAACTGATAGCTCTTCTTCCAGAAAAGGTACATCTTCACTTAATGAAGAGAGCTCACCAGAGCCAACTCTTAGATCACCATCCTCTGGCAGTCATACACCTGTTAGCACAAATCATCCAACAACTTTGTCAAATGAGACAGAGCATAATCAGGCACTACATTGTGAGACTTGGACAACTAAAGGTATTGATGGACAGAATGAAAGCATTCAGATGATAGAGGAGGCATCATCCTCAGACACCCAACAGTTTGACTCCTCACAGTTCAGTGCTACTTCTACAGAAGAGAGCATTGATATTGCAGAAGCCTCAGTAGTGAAGACAGAATTAACTGGGGGCATCAAGATGAACATTTCTTTCTCACGGAAGTCATCTAAATTCTCAGAGGTTTTTGAATTCACAGGCACACCAGCACTTTCTGCCAAAAGTACGCAAGGGTGCAGTAGATATGGCTTCCGTCAGACTCCAGATCGGCAACAAAGAAAGGCAGCAGCACGACTTGGTTATTCTCCTGGGTTTCCAGTGTTCTCCAGTCCACAGGCCTCAGGAACACCTGCGCATAGAAAGAAGCAGCTTGTGGAACCCAACCCTCTTACTTATCAAGTAGAATTGGAAATGCAGGCATCAGGTTTACCTAAGCTTAAGTTTAAACGTACTGACTCTTTCAATTCTGGTGAAACATCTGATTATGCAGCCAAAGGGCTGGTTTCACATATAAATAACAAGCCATCAAGAGTTGATAGCCCACTTACACATTGTTCCAAACATCGAGAACCTAGTTGTATATCCCCTCCTCATTGTACACCTGGAAAAGGAGGTGTCCAGAAATATATATGCCAGTCAATCACTCCTACAAGGCTTCTTACTAATAGCCCTTCTCCCCTGGGTCCTGGGGAACACATGCCTTGGACCCCATCTCCTCAGAGCGTAGGAAGGTCAACTCCAGAGAACTTCAGGACCTGGCCTCGCAAGAAAAGGGCAAGGACAGGTTTGTTGGGGACCAAGGAGATCAAGGAAGGGGCTGAGATCTTGGAAGACCCAGAGCTTGACGGTGTGTTCAGGCTACCAGGGACAGAAGAGCCTAAGGTTTTTAGGGACGCTCCTGCTTTTAAATACGCATTAGGTATTCCATCCAAGCTCTGCTCTTCAGAGAAGATGGACTGGGCAGAATCTGTGGTGCATAACTGTGACAAAAGAGACAGTATGAAATGTGATGATTTGTCATGGATAAGTGGGAACGGATCACTTGGCTCAGTGGTCACCCCTCCACACTCCAAAGTGAAGAAACCAGTTTCTGCCAGTGGAATCCTTGCTCTCACCCAGTCACCCCTTTTATACAAAGGGAAAACAGCCTCTGTTACCAAGGAAACCACACAATCTGATGACTCAAGTGGAAACTCAGAGCAGTACGGTAGTAAGGGCATGCACACATTTAATGTCTCGCCTGTTAGCCAACCACGGAGGCGCCAGGCTTGTGGTAGGACGTACAGCCGGAAGAGACTGCTGGACCCATAAGGTTTTGATGAACCTTAACACTTTGTGATGTCgctgtatattatttatatatttctgtttcatcattgCTTGTCttgattgtttttattctttaggTTGACTTTAGGATTTTATGTactattgtatatatttttaattatgtgaaaaatctCAAAATGGTCAGATAtttcaaggctttttttttgtttgtgtgtggtcCAATTTTAAGTTTTCTTCAGTTAGTAGACTGTTGAACATTTTCTGCAATTAAATTTTCTTCTACCTCCCATGATGATGAATTTCTTAATTGCACCTTCATGCAATGTAGCATAGATCGTATGGTGATAACTTTTAAACAGGAAGAATATTAATTACTGGTAAATGCTGATAAAGAATGTGCCATGTTTGCTTTCATTTCTTCTGCTGTGGCAGTGGTGCTATTTTCATACTGTACACAGAAGAAAAGTATTATTTCTATTGCTCACTTTGCCTCTGGGTAAGTAGAAATAATAATTGCAAAAAATGTTGGACTACCACTTTTGGACACCTGGTATTCATTGTCTTGTCATAAACTGTGAAATAagtgtaaatatgaaacaaattattttaataaagattatGTTCTTAATAGTT

Function

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0010212 response to ionizing radiation biological_process
GO:0007095 mitotic G2 DNA damage checkpoint biological_process
GO:0033314 mitotic DNA replication checkpoint biological_process
GO:0006260 DNA replication biological_process
GO:0006281 DNA repair biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578835.1 lncRNA upstream 38821 18601539 ~ 18620821 (+) True LOC113530068
XR_004578834.1 lncRNA upstream 38821 18602144 ~ 18620821 (+) False LOC113530068
XR_004578837.1 lncRNA upstream 38821 18602145 ~ 18620821 (+) False LOC113530068
XR_004578836.1 lncRNA upstream 38822 18601568 ~ 18620820 (+) False LOC113530068
TU178803 lncRNA upstream 107505 18551893 ~ 18552137 (+) True G150958
TU178948 lncRNA downstream 75775 18747827 ~ 18796239 (+) False nfat5a
TU178978 lncRNA downstream 273223 18945275 ~ 18945942 (+) True G151093
TU178969 lncRNA downstream 282997 18955049 ~ 18997932 (+) True G151084
TU179021 lncRNA downstream 437791 19109843 ~ 19110973 (+) True G151134
TU179305 lncRNA downstream 554597 19226649 ~ 19227893 (+) True G151395
XM_026918806.2 mRNA upstream 5467 18652771 ~ 18654175 (+) True c9h11orf96
XM_026919133.2 mRNA upstream 13936 18636774 ~ 18645706 (+) False alkbh3
XM_026919693.2 mRNA downstream 2958 18675010 ~ 18683428 (+) False rfwd3
XM_034307537.1 mRNA downstream 3412 18675464 ~ 18683428 (+) True rfwd3
XM_034307186.1 mRNA downstream 13085 18685137 ~ 18707311 (+) True glg1a
XM_034307187.1 mRNA downstream 13085 18685137 ~ 18707311 (+) False glg1a
XM_026919751.2 mRNA downstream 49549 18721601 ~ 18724513 (+) False urahb
TU178368 other upstream 817107 17834237 ~ 17842535 (+) True G150589
TU178369 other upstream 817107 17834237 ~ 17842535 (+) False G150589
TU178370 other upstream 817107 17834237 ~ 17842535 (+) False G150589
trnav-aac_18 other upstream 2618395 16041175 ~ 16041247 (+) True trnav-aac_18
XR_003403067.2 other upstream 2840069 15807990 ~ 15819573 (+) False LOC113529564
XR_004578809.1 other downstream 2958 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 49543 18721595 ~ 18724686 (+) True urahb
XR_004578793.1 other downstream 404543 19076595 ~ 19077868 (+) True LOC117598072
TU179056 other downstream 449112 19121164 ~ 19125132 (+) False faap24
TU179313 other downstream 588572 19260624 ~ 19263893 (+) True G151401

Expression Profile