RNA id: XM_026919908.2


Basic Information

Item Value
RNA id XM_026919908.2
length 3122
RNA type mRNA
GC content 0.46
exon number 6
gene id trim44
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 14838032 ~ 14886967 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agtgtaaaaaaaacccCGAGCAAAACACGGAAGTGGAGCGGCTTTAGTTAGCTCAGCGGGAAAGTGAAAGCAAATCAGGCCGGAGCAGGAGGACGCACAGGTAATGCTAAGGAAGTGTTAGCTTCAGTTCAACTGCTGAGACAGTCACCgactgagagaaataaaaagaccGAGAACCGAGGCTGTAGCTATTTCAGTCCCACAGCGGGCTCACAGGATTAGAGGCTTCCCTGGGACCACTCTCTCTTTTGCTAGACTGCCCctcctttttcctttctccaaTATGAACCCTCCAGGAGCATGCTGGGATAGATGCAATGATGAAGATGACCTGCCCCAGATGGACGGCACATGTGACGCGTGTGAACCAGATGAACCGCAGCCGGCTACgcaaatgtgtgtgatttgccGCTTTGCCTTCTGCGTGGTCCACGCcgaaaaacacacacgcagcacCAGACATCCAATTCAGCCCTACACCCCCCCAGAACCTGGAGTAAATGCCAACGCACACATCAATGCTCAACCCGAGGCACATGAAAACCGGCTGGAGGAGGCCAAGGCTGCTGGGGGTGGAGGTGAAGGGATGGAGGAGCAGGACAaggagcagagtgtgtgtgaatcaggaaagagagacacagtgacAGTAGAAAGACTGAGATGTAAGGATCATGGAGAGGAGGGCTCGTTGTACTGCAAACAGGATgaaaagattgtgtgtgtgctgtgtgctgtacAGGGAGATCACCGAGAACATGAGATCATCACACTCCGGGAAGCCTACATGTGGCAGAAGagtAAAGAGGGCATAGATCTGCTAGCATGCACACAAGAAATGTCAGAGAAGATCAAGACCAAGTGGACCAGTCCAGAAATGAGCCCAGACGAGCTGGAGCGCTACGTGAACCAGCAGTTTGACGAGTTACAGAGACTGGTGCGTCTGGAGGAGTGGAGAGTGCTTCACCTGGTAGACCTGAAGGAAGCCTTTTTGACAGCACAGGCTGCTGAGAAGATTGCTGAGATCAGCGTTCACACTGAGAAACTGCAGGAGGAGATGGACTCCATCACACAGCAGCTGGGTGAGCTTGACCATGCTGAGCAAAATGGAGTGGCCCCAGCCGGCCTGGCACCTCTGCTGGCAGGACAACCGCGGCCGCCTGGTGCTGCTGTTCGGGAAGCAAGGCCTCTGATGGACCCTGAAGCCAGACCAAGACTACCTGCTCAGCAGCAAGACCCTCAGGATCCTCGAGACTATGGAGATGGAGGAGACTCTTCCATGGGCCATGCTCCataacagcaacattaaagtcTAACTTCTGCTATCTTCTGCCTTATTCTTATGAACTGGAACATTGGAGTggactgtctgtctttctagcTACTGAAACTACCTTTCAGTATCGACTTTCTGCTTGGGTTGTTGCCTTTTTCTGTTCAGCCTTTGCTGCTTGTCTTCTcctgaggaagaggatgaaTTGAATGGAGTTGATTGCAATCAGAGTGAGTCTTCAACACCAGTCAGACACTTGGCTGAGGATTTGCAGCTTAAGGACACACAAAGAAAGATGGGAATGTAAACCAAATCCAGTTTGCcttcatttgtatattttgtcaTGATTATAGTGCTGGAGTTGTAGAATATGAATACCCAACCTAGTATACAAGTACAGTGTATACTAAATTGCATACATTCTTGGGCAGTTGCAATGAATTCTTGCATTAATTCTTGGACAGTTGCATTAATTCTTTTTTAGTTTTACCCTATTTCCTCccaatttgtttatttttctattcccacccactagctatgTATGTTctgtcacatgacagctaccaaccagggaggatgAAAgcaaacacatgcttcctcagagacatgtgaagccagccactgcATCTTTGCAAACAGCTGCTCATGCATCAAAGGTCAGCGTAAcatactcagaggaaagtgctaactGCCCTCTTATATGAGCTcgcagacacccacgattgctCGCTCTGATTGACGTAGGAGAGAGTAATGctatccctcccacccaaagagcacagccaattttgctctctcgCTGTGGCATTGTCGTGAATCAAAGCTTGCAATCTCCTGATGATCAGAGCCGCCCAGGAGACATACAAAGTGAAGATGGTAAGAAAGGTTGGAAATTGTTATCTGTTGTTGTCCATACATAGATTCAGTACTGCAAAATGCCTTAAAAACCAATATCGGTTTGGTGAAAACACCAAAAGTTTGATGCAAGAGAGGCAGaaatgagagaggaaaaaccaccaaaagttaaaaaaaatgtccatatTTAACATGGAACATCTCTGTCTGAACTGTAgcaaaaaaactgtatttttttatactgtcCTCACTTgaggaaaaatgtgtgtaattattgtaGGAAGCTAAGGGCTTTTTGTAAATGGCACTCATATAAGCACATACAATCATTTTTCATGGACACATGATTACACTTGGAAATGTACCCATGAAGTTTTGAATGGCTTTGTAAATAGGTTTAGCATCTCCTCACTGCCACTTTTTAGTTTTGTGCTGGAACATATGACCTTCATTTAATGTGCCCTTCTGTTGCTTATGATGCTGATGAAAATGTGACAGTTTTTGTTCAAAACTTCAAAAAGTATGAGATGCCTTTAATTCCACTAATCATTTGAACAGACAATAGACTTTCACTGTACAATAAAATTCATAGAGTGTGATTCTATCCCCcccttcagctgctcctgttcaGGGTCACAACAGCGGATCACTCGTCCGCATATTTTGATTATGGCTCAAGTTCCTGATGCAATGCTCCCTAtttccgggcttgggaccggcactgaaaGCGCACTAGCTCGTGCAaccctccagtggctggggttggttccctgaccAGGGGTCGAACCCAGACTGCAGCGAAGAGTGTGCTGCATGCTAACCACTAGTCCACCAAGTGAACCTAAACATGTGTATTGTATATTAAAACACAATACTGCAGAAAAAGGAAGAAGGTgcaaaacataaaatgtaaaatgtacaagAAACTGCATTTACAGTATGATGGAAGAGGACAAAAAGgttgtttcatgtttttcaatGAAGCAGTGGGATTTTA

Function

GO: NA

KEGG:

id description
K12020 TRIM44; tripartite motif-containing protein 44

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176086 lncRNA upstream 33586 14804141 ~ 14804454 (+) True G148645
TU175974 lncRNA upstream 99690 14723351 ~ 14738350 (+) True G148551
TU175944 lncRNA upstream 335158 14502622 ~ 14502882 (+) True G148521
TU175875 lncRNA upstream 537804 14300017 ~ 14300236 (+) True G148459
TU175721 lncRNA upstream 752619 14085219 ~ 14085421 (+) True G148327
TU176101 lncRNA downstream 567 14887534 ~ 14888203 (+) True G148654
TU176237 lncRNA downstream 156166 15043133 ~ 15043881 (+) True G148787
TU176315 lncRNA downstream 215511 15102478 ~ 15102695 (+) True G148862
TU176320 lncRNA downstream 249523 15136490 ~ 15137999 (+) True G148866
XR_003403125.1 lncRNA downstream 249534 15136501 ~ 15136728 (+) True LOC113530229
XM_026918802.2 mRNA upstream 25334 14809908 ~ 14812706 (+) True fjx1
XM_026919383.2 mRNA upstream 128606 14693632 ~ 14709434 (+) True cd44b
XM_026919352.2 mRNA upstream 155723 14639460 ~ 14682317 (+) True pdhx
XM_026918840.2 mRNA upstream 207601 14623295 ~ 14630439 (+) False ehf
XM_026919008.2 mRNA downstream 24260 14911227 ~ 14994873 (+) False ldlrad3
XM_026919007.2 mRNA downstream 24261 14911228 ~ 14994873 (+) True ldlrad3
XM_026919685.2 mRNA downstream 202308 15089275 ~ 15096339 (+) True LOC113530018
XM_026919686.2 mRNA downstream 202308 15089275 ~ 15096339 (+) False LOC113530018
XM_026919824.2 mRNA downstream 215957 15102924 ~ 15111187 (+) False metap2b
trnar-ucg_5 other upstream 1017378 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_003403080.2 other upstream 1062857 13761334 ~ 13775183 (+) False ces2b
TU175114 other upstream 1484787 13349326 ~ 13353253 (+) False zgc:172145
TU174750 other upstream 1920786 12916919 ~ 12917254 (+) True G147542
XR_003403100.2 other upstream 3534094 11295128 ~ 11303946 (+) False hrh2a
XR_004578669.1 other downstream 921023 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other downstream 921023 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other downstream 921023 15807990 ~ 15819573 (+) False LOC113529564
trnav-aac_18 other downstream 1154208 16041175 ~ 16041247 (+) True trnav-aac_18
TU178368 other downstream 2947270 17834237 ~ 17842535 (+) True G150589

Expression Profile