Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026919955.2 |
| length | 1211 |
| RNA type | mRNA |
| GC content | 0.41 |
| exon number | 8 |
| gene id | eif3ja |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047603.1 |
| NCBI id | CM018549.1 |
| chromosome length | 29458963 |
| location | 17437234 ~ 17443674 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0001731 | formation of translation preinitiation complex | biological_process |
| GO:0006446 | regulation of translational initiation | biological_process |
| GO:0005852 | eukaryotic translation initiation factor 3 complex | cellular_component |
| GO:0033290 | eukaryotic 48S preinitiation complex | cellular_component |
| GO:0016282 | eukaryotic 43S preinitiation complex | cellular_component |
| GO:0003743 | translation initiation factor activity | molecular_function |
| id | description |
|---|---|
| K03245 | EIF3J; translation initiation factor 3 subunit J |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU178004 | lncRNA | upstream | 2857 | 17430143 ~ 17434377 (+) | True | G150261 |
| TU177846 | lncRNA | upstream | 181897 | 17253667 ~ 17255337 (+) | True | G150152 |
| TU177842 | lncRNA | upstream | 200288 | 17236641 ~ 17236946 (+) | True | G150148 |
| TU177389 | lncRNA | upstream | 863362 | 16540599 ~ 16573872 (+) | True | G149729 |
| XR_004578660.1 | lncRNA | upstream | 963006 | 16460380 ~ 16474228 (+) | True | LOC117597920 |
| TU178009 | lncRNA | downstream | 2575 | 17446249 ~ 17446460 (+) | True | G150265 |
| TU178012 | lncRNA | downstream | 13246 | 17456920 ~ 17457135 (+) | True | G150268 |
| TU178163 | lncRNA | downstream | 258880 | 17702554 ~ 17702758 (+) | True | G150407 |
| TU178372 | lncRNA | downstream | 389092 | 17832766 ~ 17840449 (+) | True | G150590 |
| TU178374 | lncRNA | downstream | 467963 | 17911637 ~ 17912583 (+) | True | G150592 |
| XM_026919689.2 | mRNA | upstream | 13769 | 17420208 ~ 17423465 (+) | True | duox2 |
| XM_034307110.1 | mRNA | upstream | 114376 | 17316673 ~ 17322858 (+) | False | zgc:101540 |
| XM_026919770.2 | mRNA | upstream | 114376 | 17316675 ~ 17322858 (+) | True | zgc:101540 |
| XM_026919717.2 | mRNA | upstream | 121992 | 17298741 ~ 17315242 (+) | True | cep152 |
| XM_026919921.2 | mRNA | downstream | 1687 | 17445361 ~ 17447657 (+) | True | si:ch73-330k17.3 |
| XM_026920042.2 | mRNA | downstream | 15816 | 17459490 ~ 17467526 (+) | False | scamp5a |
| XM_026920041.2 | mRNA | downstream | 15818 | 17459492 ~ 17467526 (+) | True | scamp5a |
| XM_034307392.1 | mRNA | downstream | 16563 | 17460237 ~ 17467526 (+) | False | scamp5a |
| XM_026918879.2 | mRNA | downstream | 25246 | 17468920 ~ 17473913 (+) | True | LOC113529594 |
| trnav-aac_18 | other | upstream | 1395987 | 16041175 ~ 16041247 (+) | True | trnav-aac_18 |
| XR_004578669.1 | other | upstream | 1614643 | 15807990 ~ 15822591 (+) | False | LOC113529564 |
| XR_004578670.1 | other | upstream | 1617078 | 15807990 ~ 15820156 (+) | False | LOC113529564 |
| XR_003403067.2 | other | upstream | 1617661 | 15807990 ~ 15819573 (+) | False | LOC113529564 |
| trnar-ucg_5 | other | upstream | 3616572 | 13820590 ~ 13820662 (+) | True | trnar-ucg_5 |
| TU178368 | other | downstream | 390563 | 17834237 ~ 17842535 (+) | True | G150589 |
| TU178369 | other | downstream | 390563 | 17834237 ~ 17842535 (+) | False | G150589 |
| TU178370 | other | downstream | 390563 | 17834237 ~ 17842535 (+) | False | G150589 |
| XR_004578809.1 | other | downstream | 1231336 | 18675010 ~ 18683428 (+) | False | rfwd3 |
| TU178953 | other | downstream | 1277921 | 18721595 ~ 18724686 (+) | True | urahb |
