RNA id: XM_026919961.2


Basic Information

Item Value
RNA id XM_026919961.2
length 4462
RNA type mRNA
GC content 0.46
exon number 13
gene id banp
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 13473184 ~ 13522795 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATCACTAAGGAGCTTCATTTGAGCTAGGACAGTGAGAAAGTTTGATGCACTGCAGGTAGACATGAGTTGGAGGTGCAGGAAGAGCTGCAGTACTGACGCTGTCCTGTTCAGCTTTAGAGCGCAGTGGAAGGAGTGGAGCTCGTGCAGAGTCTCTTCTCTCGCGAGGAAGGACGCCATTACCGAAATCCCTACAAAACAACACGAGAATTCATCATTCACACGGCTTGAATGATGTCTGAGCAGGATCTGGTGGAGATAGTCCAGATTGCTGTGGCGGACTTAAACCATGAGGAAAATGATGCAGATGTTCTGGAGAACCATGATGATGCTGATAAGCCAGAGCCGAAGCGAGCGAGGATGGAAAGCAGTAACCAGGATGTGACTCTGAAAGCAATGCTAATGTCCATCAGCCAGGCTATATGCCAGAGGCTGGACAACATGGAGGCAAAGCTGCAGATGCTGGAGGCAACATGTAGGGCCTTGGAGGAGAAGTTTGATACTGTGATGGGGAAAAACCCAGGGGCTATTCAGGTGCCAATGGTGGCTGGATCACCCTTCGGTGCTACACAGACGTGCGACAAAGTTCGCTGTGTGGTGCCCCAGACCAACGTGGTAATGAGCAGTGACCGTCCTAAACCAGGCCAAGAGGAGCCTCTTCCTCGCACCACAGACTCACTAGAGAATCTTCTCAGCAATACGGTGGGCAGagggaaacaaaaaacaatcgTCCTAAAGGTGCCAGGGCCAGAAGAGAGTCAGGAGGACCTGGAGAGTGGATCAGAAGCCAGCGACTCTGTGTCCAATAGCGGCCAGTCCTCAGCACAGAACACCAACAAtgtcacactcatcacacttaACTCAGAAGAGGACTATCCTGCAGGAACGTGGCTCGGGGATGAAAATAATCCGGAGATGCGCGTGCGCTGTCCCGTATCTCAAAGCGACATGTTGCATATCAGCAGTAACTGCCGCACACCGGAGAAGATGGCGCTCACACTGCTAGACTACCTGTTTCACCGTGAGGTGCAGGCCGTCTCTAACCTGTCCGGCCAGGGCAAACACGGCAAGAAGCAACTAGACCCGCTCATGATCTACGGCATCCGTTGTCATCTGTTCCACAAGTTTGCCATCACCGAATCAGACTGGTACCGCATTAAACAGAGCATTGACTCCAAGTGTCGCACAGCATGGAGACGGAAACAGCGTGGCCAGAGCCTGGCAGTCAAGAGCTTCTCCCGCAGGGTACCAGCTGCCCGCACTGGCGCAGAGGGGGTCTCAGTAACAGAAACAGCATCTTTGGAGAGCTCCACACAGCAGGCCCTCCAGTACGCACTGGCTGGTGCAACCCAACAGGTCCAGATCCACCGCATAGGAGAAGATGGACAAGTGCAAgtaTTTCCACAGGGACACCTCCATATAGCTCAGGTGCCACAGGGGGAGCAGGTGCAGATCACACAGGACAGTGAGggCAACCTTCAGATCCACCAGGTGCATGTTGGGCAGGATGGACAGGTTTTGAGAGGGACTCAGCTCATTGCAGTGGCCTCTGCTGATGGGACAGGGACGGTGGAGGCGTCTCCTCTGCAGGCAAATGACATCCAAGTTCAATACGTCCAGCTGGGCTCTGTGACTGACCACACAGGAACTGTGCAGGCTGAGGCACTAGGCTCTGCGCTGCAGGCAGAGATGGAGGTAAAGGAGGCCATACAGATCCAGCAAGGTGCAAACGGAGAAGTGGTCCAAATTCAGATGCCTGTCAACTCAGTCGGCACCTGAGACACCAGCTCATgcactctctctcattcacaagACTTCTAAGCGTACACACAGATGCATCATTGCGGTTCTGCAGCAGTAGCACctgagatacacagagagagagagagagagagagagagagagagagagagagagagattgatatTCGTGGGTGCTCAAACTCAAAATCTGAGTGGACAACCATGGGTTAAGCCCAGGCAGAGAGTCtttgtttaaacaaataatataattcCTTTTGGGTCAACCAGTCTATTGGCAATCTTCTGACAATCACAGACTGTGAAAGCAGCCAGTCAGCTTATTAACACAAAAGCAGTGTTGGCTCTAGTGCAGGCTTGTCAAAGCTGCATGGGATACAGGCTGTGGCCCAGCTGAGTACAGGAGAAAGGAGGTCCCAAAGCCCCCCAAGCATCTGTGCTTCATCACTGCAGCAGCTTCACTGTGCAAGATGAGTTTATTTAACTACAGCTTAGAGGAGTCTGTCTAGCTGTTAGGTTTTCATGTTCAGCTAATCTCAGCTAATGTTGATGATCAGTTACGACAGAGATCGTACCTTGTAAAAACTGAATTTTGCAAATGAAGGTGACCTTTGCTACGCATGCTTCCTCCAAGGTTCTGATTGCATAATCAGCTGGAGCATCTACTGCATAACTGGCATCATATtgctttgttaaaaataataagtgaattcttttttcattttattcgtTTGCTGTCATTGTTTGACTTTCAGTTGGGTTTCACAATGGTTAGCCCATTAAAGTCGATTGTAGGTTCCTGATACCTTATGGTAACAAATGTATTAAGCAGAAAATTTCTCATACTGTAGATAGGAAACATGAGATTGTATTTGGGATTGACAATGATCAAGCCCATGTACATTCAAtgtgttgcataagtattcacccccttgaacttttcacattttgtacTGGTACATCCTGGatctgaaatggatttaattgggGTTAAATGTCATgaaaattagttctggtgcaagaGCAGTTTCCAACATAAGTCACATAATTAGGTGAATGGAGTCCAACTGTGTACAATTATTGTATCACATAAtgtcaatataaataaatctggaatgtacCCAGAAGGCCCCAGAGTTtcttagagaacatacctaaccAAAGAGCAGTCCAGGACAGAGTGGTAACGTATCAGTGTTTGGCtataaaaatatcccaaactttgaacatcccgtGTGATATCTGTTATTAAAACATGGACAGAATATGGAATATCTGCAACTCTGTCTTGAGGAAAATGTCCACCAACAGTCAGTAACCAGGTAAGGACaccattagtcagagaagcaaccaaaaGGCCAAGGGTAATTCTAAATGTGATAATgtcaccaccatgcttcaatgTGTGGATATTCTCCTCAGAATGATGAGCAATGTTGGGTTTCCATCACTTGTAGGACTTTGTGTCAAGGTCAAGCTGTTCAGTTATGGTCTCATCAGAACAAAAAGAAccacatgtttgctgagtctTCATCAAACCTTGATTTGCGCTGTAGAGAATACACTGCTTTACATTGTGTATGACTTGTTCAAAAGGGAATAAATGACTGCCATTGTGTCATGTACTGATACTGCATATGTTTCGGTTCTGAGTGTCAACAGTAGCTGCCAGATGGAATTCAGTAGAAAaaattcaacagaaaaaaattttctttttacacaTTGCTGTATATTATGATGCTGTTATGAATTGAGTTGTGAGAGCTTTGTGCTCTATATGAAGAAAGATCTGGGTTTAGTGACAGTGCTATCACTAATTTTAAAACACATGATTTGGATTTCAGGGGCCTGTGGTGTAATGGGTGATATTGTAAGTGTTGTAGTATTGTGGCTGTTTGCTGTTAAAAGAGTAGTctgttttctgttaattttaTATTCTGGGGACAGGGTGTGTAGAAGGATAAAGTACTTCCTCTAGGTCACCACACATTTTCTCATCACAGCTCAAGACACGGTGACCGAACTAAGCTTCCACTCCTGCTAtagtgcttcctctctctgtctctgtgtatgtgtgtgtgtactccaGATGGAAGAGTGAGTCTCTGGTGATGGGTATCAGGAAGACTGggggagagagataaagagagtcTTTTTGGAGCTTCACTGTAGTTCCCACACATTCTGTGATGTAATGGTGTATTTTGGAGTGCTTGCAAGAAACAAGTCGTACAACCATTGATAAACCCACTTCTTCTctatttccttttgttttctcttaGTCTCTGTGTGTCTATTAACCACTATTTTAAGCTTCCACTCTCTATCTTTCCAGCACTTTAACACAATCCCTCTTTCTCAGATTTCTGCTCTTTTGCTCTCTCGTTCCCCCTCATCtgttttatctgtctgtctccctctcttcctctcctctgtcTTTGTTCTACTATCAGACTGTTTGGGGCAGTCTTGGCAAAGCTGGAGCTACAGAAACCCCTCGCCCACCCCCCTTTCTTTGCCTGACTCATCCGATTCTTACGAGACCTAGCTGTCCTCGCCACttgttattaaaaacaaaaagacaggcGAAAACTTCCATGTGGCCtagtttctccagtttcttcagtttttaCTACTGGGCTCAGCACCAGGGACTTCTCATCCATGTCGTCATGACAATGTTCTAAGAGGCCATGGAAAAAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007049 cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175134 lncRNA upstream 25400 13447435 ~ 13447801 (+) True G147821
TU175092 lncRNA upstream 26810 13443129 ~ 13446391 (+) True G147788
TU175130 lncRNA upstream 35820 13437114 ~ 13437381 (+) True G147817
TU175077 lncRNA upstream 36292 13436190 ~ 13436909 (+) False G147785
TU175078 lncRNA upstream 42428 13414301 ~ 13430773 (+) False G147785
TU175308 lncRNA downstream 225452 13748247 ~ 13750306 (+) True G147977
TU175318 lncRNA downstream 268361 13791156 ~ 13829331 (+) False fanci
TU175712 lncRNA downstream 531667 14054462 ~ 14056322 (+) True G148321
TU175720 lncRNA downstream 561539 14084334 ~ 14084563 (+) True G148326
TU175721 lncRNA downstream 562424 14085219 ~ 14085421 (+) True G148327
XM_026919734.2 mRNA upstream 2458 13465273 ~ 13470743 (+) True pdcd2l
XM_026919735.2 mRNA upstream 2458 13465273 ~ 13470743 (+) False pdcd2l
XM_026919136.2 mRNA upstream 91949 13372902 ~ 13381252 (+) True prr33
XM_026919512.2 mRNA upstream 115047 13356233 ~ 13358154 (+) True myod1
XM_026918818.2 mRNA upstream 119939 13349323 ~ 13353262 (+) True zgc:172145
XM_026918607.2 mRNA downstream 827 13523622 ~ 13712474 (+) True LOC113529436
XM_034307427.1 mRNA downstream 827 13523622 ~ 13712474 (+) False LOC113529436
XM_026918609.2 mRNA downstream 126428 13649223 ~ 13712474 (+) False LOC113529436
XM_026918610.2 mRNA downstream 126479 13649274 ~ 13712474 (+) False LOC113529436
XM_026919169.2 mRNA downstream 219165 13741960 ~ 13757527 (+) True LOC113529751
TU175114 other upstream 119948 13349326 ~ 13353253 (+) False zgc:172145
TU174750 other upstream 555947 12916919 ~ 12917254 (+) True G147542
XR_004578672.1 other upstream 2166883 11295128 ~ 11306318 (+) False hrh2a
XR_003403100.2 other upstream 2169255 11295128 ~ 11303946 (+) False hrh2a
TU173183 other upstream 2925409 10543875 ~ 10547792 (+) False si:ch73-233f7.1
XR_003403080.2 other downstream 238539 13761334 ~ 13775183 (+) False ces2b
trnar-ucg_5 other downstream 297795 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_004578669.1 other downstream 2285195 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other downstream 2285195 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other downstream 2285195 15807990 ~ 15819573 (+) False LOC113529564

Expression Profile