RNA id: XM_026919968.2


Basic Information

Item Value
RNA id XM_026919968.2
length 2854
RNA type mRNA
GC content 0.44
exon number 16
gene id usp3
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16049084 ~ 16060168 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGTCACCAGCGTTTCAAGCGTTTCGACACACTGCATAGGTTTATTAAGGGACGGGTTCAATCATTTAAAAGCTCCATAGAACTTATTCTCCGCCAGCACTGGTTTGCGGAGACTCATCATTCATTTAATAGCCAacattgtgtttatgtgtagtCTAACGATAGGAAAGCATTTGGCGGTTTTATACGGTATCATTAAAGCACCATATTTGTCCCGCTTGTGGACTCTGCGACCCTGCTGAACCCGTGACGTCATTAGATGGCGCCTCTTCCCCGTCGGCTCGATACCGCTTTCTGTGGCTAGCTCTTCTTGTCATGGAGTGTCCTCATCTCAGCTCCACGGTGTGTGTGGCGGTGGATCCCTCCCGCTTCCCTCACGGCTCACCTTCTTCATGGTGCTGCAGTGTTTGCCGGTCAAATAAAAGTCCTTGGGTTTGCCTCACCTGTTTGAATGTGCATTGTGGAAGGTATGTCAATGGCCATGCTAAGAAGCATTTTGAGGAGGTTCATTGTTCACCAACTGGACAGAAGAAAACAGAGAAGTTTCAACAACATTCTGTGTGCATGGACTGCAGCAGTTATAGTACATTCTGTTACCGCTGTGATGACTTTGTGGTGAACGACACCAAACTGGGCCAGGTGCAGAGGGTGAGGGAGCATCTTCAGAGTTTGGAAAACTCTGTGATGAATTCTgacagacagaggaaaagaaaactcTCAGGGAGTTCCTCCCCTGACCTCAGGCTGTCAGCAGATGGGGAAGGCCCTCCAGCTCGGAGTGCCACTGGCCTCCGGAACCTGGGCAACACGTGCTTCATGAACGCCATCCTCCAGTCTCTTGGTAACATTCCTGAGTTTAGTTGCTATTTTAAAGACTTGCCGGCAGTGGCGCTGCGGAGTGGAAAAACTGCAGGAAGGAGAATGTACCACACCCGAAGCCAGGGGGACAGCAGTGTGTCCCTGGTAGAGGAGCTCAGGAAAACCCTTTGTTCCCTTTGGCAGGGAAGTCAGACTGCCTTTAGTCCAGATGCTCTGTTCTATGTCATCTGGAAAATAATGCCAAGTTTCAGGGGCTATCAGCAGCAGGATGCCCATGAGTTCTTGCGTTACCTACTGGATCACCTCCACAGAGAGCTGCAGGGCAGTAAGAACGGCTTGCCTGGGTCGAGCCTGCTCCCAGACAACCTTAACTCAGGAAGCAATTGCAGCATTAATGGGACTCCCACTATGGTCACTGCTGTATTTGGTGGCGTCCTTCACAATGAAGTAAACTGCTTGATATGTGGCACAGAGTCAAAGAAATTTGACCCATTTTTAGACCTTTCCTTGGACATTCCCAGCCAGTTTAGAGTAAAAAGGACAAAGGACCAGGAACCAGGGCCAACCTGCACGTTGAGTGACTGCCTTTCTAGTTTCACTGACCTGGAGGAACTCGATGAAACGGAGCTCTACATGTGCCATAAGTGTAAAAAACGACAAAAGTCCACGAAGAAATTCTGGATCCAGAAACTGCCTAAGGTCCTGTGTTTGCATCTAAAGAGGTTTCACTGGACAGCTTTTCTAAGAAATAAAGTTGATACCTATGTGGAATTCCCATTGCGAGGCCTTGACATGAACTGCTATTTACTGGAGTCTGAAACCAGTCTCACTGAGAGTTGCCTGTATGACCTTGCTGCAGTAGTGGTGCACCATGGATCTGGGGTGGGATCAGGTCATTACACAGCGTATGGTCTTCATGAGGGCTGCTGGTATCACTTTAATGACAGCACTGTGACTGTAGTCAGTGAGGAGACAGTAGCCAAAGCCAAGGCCTACATTCTCTTCTACACAGAGCGGACAGAGCAGGACAACATGGGCTCCGTGACCAAGCCGAAGCTTTAATCAGCCTTACTGTACCATGAAGCCTTCAGAATGATAGTCCACCTTTCCTGCACACAGTTCCACGCTGAGCTTCAGTTATTATTTCACCCGTAGCACCACCATCACACCTCAGTAAAAACTAAATGCTGCTGTGTTCATTATATTAAGAAAACATTCCTAATGTTGCCTTTCATTGTTTTTGTCCAAAGGCCATCTTGTGTACTGGTGGACAGTGTTGCAGAAACTGGATCAGATGAAATGACAGAAAGTGTTgtaattgtttaataatgtgTATATCAGATTTTGGCCACCTCTTGTTTTAACATTAGATGACTTCGGTTTCATATAAAggtttttatgtaaatgaacTAAATTTGAGTATTTTCTTACTGCTGTTTGTTGGGTTTGAGGCATTTCTAACTTGAAACTTGAACAATCATAATTTGATGTTTCCTTTTCCCCTTTGTATTGCACAGGTAGTTTACTTTTACAAACAGTATCACCTCATAAATGTGAAAAGGACATTTGAAGAAAGGGAAAATGTTGGGTCCATtacattttgattatttatacTGTTTTACTGGGAGTAGTCATACCTCTTGCTATAAACCTTGATTCTACCATCATGACATTTGAGCACTCATGATTTTATGTGAATGTTTATAGAAGCACTAAAGAGATGTGAGTTATAAAAATGtagtcagtgtttttaaaaacattgcattGAAGTGCAACAATAATCTCAGATCTTCAGTATGACACTGGAGTGAAGTTGAAGTCTTTCACAGTCTCATGTGAATCTTGTGATAGGTAAGAGAATGGAGTACTTTGTTTTCTCCAATTGTTTCCTACTCATGAAAAGCACCCATttcaaatgttcattttttcatgATGGGaatggtttatttaattttggcATGCACCGTAGTTTCTGCTGTAACACTGCTTAAAATGATGCATCAGTAAACACTTTTCCAGCAAGTTACACTTTTA

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177011 lncRNA upstream 21065 16027607 ~ 16028019 (+) True G149428
TU177010 lncRNA upstream 22572 16024844 ~ 16026512 (+) True G149427
TU176828 lncRNA upstream 230716 15771838 ~ 15818368 (+) True G149276
TU176815 lncRNA upstream 294172 15754665 ~ 15754912 (+) True G149268
TU176798 lncRNA upstream 323993 15721348 ~ 15725091 (+) True svip
TU177169 lncRNA downstream 194516 16254684 ~ 16255314 (+) True G149552
TU177191 lncRNA downstream 268088 16328256 ~ 16328539 (+) True G149574
XR_004578685.1 lncRNA downstream 278422 16338590 ~ 16341963 (+) True LOC117597940
TU177372 lncRNA downstream 379538 16439706 ~ 16440054 (+) True G149722
TU177373 lncRNA downstream 385871 16446039 ~ 16449140 (+) True G149723
XM_026918866.2 mRNA upstream 930 16045575 ~ 16048154 (+) True si:dkeyp-73b11.8
XM_026919794.2 mRNA upstream 34929 16009837 ~ 16014155 (+) True neil1
XM_026919523.2 mRNA upstream 40261 16005670 ~ 16008823 (+) False commd4
XM_026919524.2 mRNA upstream 40261 16005686 ~ 16008823 (+) True commd4
XM_026919989.2 mRNA upstream 68839 15968543 ~ 15980245 (+) True stra6
XM_026918890.2 mRNA downstream 920 16061088 ~ 16066983 (+) True fbxl22
XM_034307478.1 mRNA downstream 32904 16093072 ~ 16106147 (+) True LOC113529940
XM_026919553.2 mRNA downstream 33592 16093760 ~ 16106147 (+) False LOC113529940
XM_026919736.2 mRNA downstream 110076 16170244 ~ 16174834 (+) True si:ch211-112g6.4
XM_026919649.2 mRNA downstream 142607 16202775 ~ 16206450 (+) True lrrc61
trnav-aac_18 other upstream 7837 16041175 ~ 16041247 (+) True trnav-aac_18
XR_004578669.1 other upstream 226493 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other upstream 228928 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other upstream 229511 15807990 ~ 15819573 (+) False LOC113529564
trnar-ucg_5 other upstream 2228422 13820590 ~ 13820662 (+) True trnar-ucg_5
TU178368 other downstream 1774069 17834237 ~ 17842535 (+) True G150589
TU178369 other downstream 1774069 17834237 ~ 17842535 (+) False G150589
TU178370 other downstream 1774069 17834237 ~ 17842535 (+) False G150589
XR_004578809.1 other downstream 2614842 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 2661427 18721595 ~ 18724686 (+) True urahb

Expression Profile