RNA id: XM_026919987.2


Basic Information

Item Value
RNA id XM_026919987.2
length 4473
RNA type mRNA
GC content 0.47
exon number 16
gene id ndst1a
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 9918102 ~ 9986415 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACATATCCGATGCAAATGAAGATGGAGGCGCGTCATGAAACAAAAGCTCGTGCTGTAATGGAAGGAAAGATTGGACTAAACTATTGAAATCCGTGTTCTGTCCGCATTTTAATGGAGAATAACAAAGCCAGCACCTGGTACTCAAACATCTCTGGAATGAGGGACTACATTTGCACTGGTTGCTCTGACACTGCTTCAGCTCCTTCAAAAGCAGCAATAAGGAATGAATTTGAATGAAGGACAGGAAACAGGCTCAATCGGCTACTTATCACGCATTCGGGGAGCCTTGTGCAGACAAAATCATCTCAATTAAAGAAGCTGACGACAGACATGGTGACATAGTGGTGTTTAATATGGAGGAGACCAGCTCGTTGAACATCTCTTTTCTTCACTCACAATGTTTTTATACACAGACATAAATTGATGGTGTAAATGGAAAGAATCTGAGATTTGATTCCATTTTGCCTTTTTGcccctttgtttgtttgtttatttgtttatttttggtgGGGGGGGGGCATCCCCACGATGCTGGGTGCTGGCTGCGTGCGATGTTTCCTCCGCCAGCTCACGCTCCAGACCatctttctcctccttttcctcttgTGTACGCTCAGCGTCTTCATTTCCGCCTACTTCCTGTATGGCGTCAAAAGGGAGTTCGAGCCATCCGCTGGAGTCACGCCAGAAGACTGCGATGATGACATCACGCCATCGCGGCTCCTGCCGCTTCAGGATGAAGTGGGCAGAGATGCGGCGGCAGATGGCAGCCAGACCGACCCGGTGGTTCTCGTGTTTGTCGAGAGTCAGTACTCCCAGCTGGGTCAAGACATCGTAGCCGTGCTGGAGTCGGCCCGATTCCGGTACCATACAGAGATCTCTCCAGGAAAAGGAGACATGCCCACACTGACAGAGCGCGACCGGGGTCGCTTCGCTCTCATCATCTACGAGAACATCCTGAAGTACGTCAACATGGACGCCTGGAACAGGGAGCTGCTGGATAAATACTGTGTGGAGTATGGAGTGGGAATTATCGGCTTCTTCAAGgcgaaTGAGAACAGTCTCCTGAGTGCCCAGCTAAAAGGTTTCCCTCTGTTCCTGCACTCTAATTTGGGTCTAAAGGACTGCACCGTCAACCCAAAATCACCCCTCCTGCACATCACCCGCGCCCACGAGGTGGTCAGAGGTCCTCTGCCCGGTGATAACTGGACCGTGTTCCAGTCCAACCACTCCACATATGAGCCAGTACTGTTAGCAAAGACCCAGTCAGCAGAGAGCATGGGCCTACGTGCCGTCCTCCACACCTCTGTGGTTCAGGACCTCGGCCTGCATGATGGCATTCAGCGCGTGCTGTTCGGCCATGGCCTGGCCTTCTGGCTACACAAGCTGGTGTTTGTGGACGCTGTGGCCTTCCTCACATCTAAGAGACTCTCACTGTCCCTGGACAGATATGTACTGGTTGACATTGACGACATATTCGTAGGAAAAGAGGGCACCAGGATGAAGATGGCTGATGTAGAGGCACTGGTACAGACGCAGAACGAGCTGCGGAAGTCAATCCCAAACTTCACCTTTAACCTTGGCTTCTCAGGGAAATTTTACCATGCAGgtacaGATGAGGAGGATCTGGGTGATGACCTGTTGTTATCGTATGTTAACGAGTTCTGGTGGTTTCCACACATGTGGAGTCACATGCAGCCTCACCGCTTTCATAACCAGAGTGTGTTAGCTGAACAGATGCTCCTGAACAGACGCTTTGCTGAAGAGCACTCTATCCCCACACACCTGGGTTATGCAGTGGCTCCTCATCACTCAGGCGTCTACCCCATTCACGTGCAGCTCTACGAGGCTTGGAAGAAAGTGTGGGGCATCCGAGTGACCAGCACAGAGGAGTATCCTCATCTCAAACCAGCCCGCTACCGCCGCGGCTTCATCCACAGCGGCATCAGCGTGCTGCCGAGGCAGACTTGTGGTCTGTTCACTCACACTATCTTCTATAAAGATTACCCAGGAGGCCCTCAGGAGCTGGACAAGCTCATCAACGGAGGGGAACTATTCCTCACTGTATTACTCAACCCAATTAGTATCTTCATGACTCATCTTTCTAATTATGGAAATGACCGTCTGGGGCTGTATACTTTTAAGAAGCTGCTGCGTTTCCTGCAGACCTGGACTCACCTGAGGCTGCAGACCCTGCCTCCTGTCCAGCTGGCTCAAAAATACTTCAGCCTCTTCCCCTCGGACAGAGAACCACTCTGGCAGAACCCTTGCGAGGATAAGAGACACAAGGATATCTGGTCTAAAGAGAAAACATGTGATCGCTTCCCTAAGCTGCTTGTGATTGGGCCACAGAAGACAGGGACAACTGCTCTGTATCTGTTCCTGGGCTTGCACCCTGACCTCATTGGCAACTATCCCAGCAAAGAGACATTTGAGGAGATCCAGTTCTTCAATGGGCACAACTACCACCGAGGAATAGACTGGTACATGGAGTATTTCCCCCTCCCCTCCAACACCAGTTCAGATTACTACTTTGAGAAGTGCGCTAACTACTTTGACTCTGAATTAGCAGCAGCCAGAGCAGCAGCTCTCCTGCCTAAAGCTAAAATCATCACTGTCCTCATCAGTCCTGCAGAAAGAGCCTATGCCTGGTACCAGCACCAGAGGGCACATGATGATCCAGTGGCTATGAAATACTCTTttcatgatgtcatcactgcGCCCCGTGATGCTCCTGCAAGGCTGCGCGTCCTGCAGAGCCGCTGTCTGGTGCCGGGGTTGTATGCCATTCACCTTGAGCGCTGGCTTCAACACTACCACCCCagtcagATTATGGTTGTGGATGGGCAGATGCTGAAAACTGAACCAGCATTAGTCATGGATAAAGTCCAGAAGTTTCTGGGACTAATGAATACTGTGAACTACCACAAGATCCTGGCGTTTGATCCTAAAAAAGGTTTCTGGTGTCAGCTCCTGGAGGGAGGAAAGACTAAGTGTCTGGGAAAAAGTAAAGGAAAGAGATACTCAGATATGAAGTTAGAGTCCCAGCTGTTTCTAAGAGAGTACTACAGAGATCATAACATTGACCTGTCAAAGCTGCTCTACAGGATGGGCCAGGCTTTACCCACTTGGCTCAAAGATGAACTTCTTAACACTAGGTAGCTTTGAGCCATGTTCCTCCCCTCTGTCTGAGAATGGTATAGTCTCCAGCACCAGTCATTGGACTGAAGTGGAATAAACCATCGATATTGTCATGGGTGAGGAAGTCATGTCTCATTGGATTTCCCCTGTTGCTTTCAGAATATAAAGTGGTTTGTAAAATATTGCATCTCTACTTCTGCTTATTAAAACCCCCATGGGGTGGTATGTTATGTTACGGACTCATCCGAAGAGGAAATGGTACATCCTCTCACTATATCATGACAGATCTAAGTGCGTCATACTAGATATGGTATTTAACACTGGCTTCTCTCACTTCTTCTTGATAAGAGGAAGATTAAAACACATGAGATGTGCTGCGATAAGCCATGTCAAAAGACCAGGAACTTGATTCTTCCTTGTCTGCAAAGAATAAATGCACTGACCATGAAAGTATGGATGAACTGCCGTTTCTTCACCTCAGGACTTCAATGGTTTGGGGCCACAGGAGCAAAAGTGTGCATTTTAAAAGTGCCAGTAATTGAAGGCTGCGCTGGGGTTTTGTACAGTGTAACTACATTACGCtctttatatgtatatgaactAATTACAAAGCCCTTATTCAGCATGACTCTGACACAGTTCCACAGCGGCCATCAACACTAAACGAATGTGTCATAATTAAATGCAAAGCCTGACAggtattgaattttttttaataattgttaatGAGATCTCCCACAGCTAATTTCTCCAACACAGCTGAATACAGCTCTAACAGGTAACATTTCTTCAGGCTGGGTGTGTACTGCTCCACTGAAGATCAGAGCGCTTCAGCTGCCATGTATTGGAAAATTAGATGAAGTACAAGATCCAAAAAGTTAAGTTTATTAACACACAGAGAACCATGCTAATGGATTTGGAAATATATGAATATTGAATGTGGGGAATTATGTTAAATTCAACTGAGTTATTTATGTGGTGTTGCAATTTATCTTGGTTTGAGAATTCTATGAAATTGTATGAAAATACAagtaaaatattgttttgtaaaaaaatcttgaatagTACAGTTGACTGCAAATGTTTACACCCCTGCTGTTTAaaaaccattcattcattcatccatcctttCCTCACACATCCCTCCCTCACTCATCCCAACCCCTCCCTTTTTCGCACCAAGCTCTTCCTCATACATCTCAGCTCCTACATCACTTATCACAAACCCTACATCAATCATGCCAACCAATCCCCTTTTCATTCCAACCCCTACATCATTCATCCCAACCTCTCCCTCAAACACCATAACCTCATGCCAGCcactcttttct

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function
GO:0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity molecular_function

KEGG:

id description
K02576 NDST1; heparan sulfate N-deacetylase/N-sulfotransferase NDST1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172779 lncRNA upstream 33475 9907797 ~ 9913831 (+) True G145842
TU172774 lncRNA upstream 40483 9903017 ~ 9906823 (+) True G145841
TU172775 lncRNA upstream 42413 9903017 ~ 9904893 (+) False G145841
TU172777 lncRNA upstream 42413 9903017 ~ 9904893 (+) False G145841
TU172659 lncRNA upstream 120023 9793274 ~ 9827283 (+) True G145745
TU172895 lncRNA downstream 117570 10103985 ~ 10104188 (+) True G145950
XR_004578825.1 lncRNA downstream 184300 10170715 ~ 10190193 (+) True LOC113530164
TU172913 lncRNA downstream 221589 10208004 ~ 10211495 (+) True G145966
TU173088 lncRNA downstream 464261 10450676 ~ 10451023 (+) True G146141
TU173117 lncRNA downstream 540128 10526543 ~ 10526858 (+) True G146168
XM_026918656.2 mRNA upstream 51962 9894150 ~ 9895344 (+) True slc35a4
XM_026918657.2 mRNA upstream 53455 9889760 ~ 9893851 (+) True LOC113529465
XM_034307686.1 mRNA upstream 53455 9889910 ~ 9893851 (+) False LOC113529465
XM_034307407.1 mRNA upstream 74109 9851466 ~ 9873197 (+) True LOC113529571
XM_026918921.2 mRNA upstream 108896 9798337 ~ 9838410 (+) False pdgfrb
XM_026919588.2 mRNA downstream 10873 9997288 ~ 10018933 (+) False bicc2
XM_026919587.2 mRNA downstream 10873 9997288 ~ 10018932 (+) True bicc2
XM_026920063.2 mRNA downstream 448532 10434947 ~ 10448212 (+) True etf1a
XM_034307524.1 mRNA downstream 448980 10435395 ~ 10448212 (+) False etf1a
XM_034307523.1 mRNA downstream 449004 10435419 ~ 10448212 (+) False etf1a
TU172076 other upstream 1105040 8841476 ~ 8842266 (+) True G145233
trnaa-agc_11 other upstream 1902896 8044338 ~ 8044410 (+) True trnaa-agc_11
trnaa-agc_10 other upstream 1904999 8042235 ~ 8042307 (+) True trnaa-agc_10
trnaa-agc_8 other upstream 1907635 8039599 ~ 8039671 (+) True trnaa-agc_8
trnaa-agc_7 other upstream 2312736 7634498 ~ 7634570 (+) True trnaa-agc_7
TU173183 other downstream 557460 10543875 ~ 10547792 (+) False si:ch73-233f7.1
XR_004578672.1 other downstream 1308713 11295128 ~ 11306318 (+) False hrh2a
XR_003403100.2 other downstream 1308713 11295128 ~ 11303946 (+) False hrh2a
TU174750 other downstream 2930504 12916919 ~ 12917254 (+) True G147542
TU175114 other downstream 3362911 13349326 ~ 13353253 (+) False zgc:172145

Expression Profile