RNA id: XM_026919989.2


Basic Information

Item Value
RNA id XM_026919989.2
length 3172
RNA type mRNA
GC content 0.43
exon number 17
gene id stra6
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15968543 ~ 15980245 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTCATGCTGGCTGCTCAGACAGCAGCCCGCCCCTGGAAGGTCACCTAATCTCAGTAAGCCACAGGTGGCAGGATAGACTGGCTGCCCCTTATTTGCATTGttgttctctttattttcatatCTTTGTTATTTCTCTTCTTGCTTTATCTTTGGTTGCTTCTCTCCACTCGTCCAGTGTGGTGGTAAGCTAAATCTGAAAACGGAGGCCTGCTTACACTATTTTTCACAAGTCTCTGCTACAGCAGGATTGGAGCACCTGAGCAGAGTGAGTGAGATATATAAAGTGAAGGAGGGAGAGACCACAGGGAACACAGGACTTCACAATACCAAACTTTGaaaggagcttttttttttttccttgcacaACGTAAGTGAACAGGAGAAAAGTGTTGTGTGTCCCACGGGAAgagggaagagagaagagaagtcCACTCTGCCTGAATTCCTGGATTTCTTTGATAcactgataggtctgttttggtccTTAAACCAGGATAATGAGTGCAGAACTTGCAAAGGAAGACTACTATGATTATCCAGATTTGTATGATAATGCAGTACCCACCAAGCCTCCTGCAGAAGTTATCCCACCATGTGACTCAAAAGCTGATGAAAGTCTCTACCACATATGCATCACAGCCATATCCTTGGTGGTCATGCTGATCCTGGTGGTGTTGGCAAGGCAGCAGAAAGTTGTAGGTAGTCTAAAAGGAGTTCCAGCCTTACTCAGCCCTGTGAATTTTTTAGACCATACACAGCACAAAGCCTTGTCTGTGGCTGTGTTTGGGGTCCTTTTCTGTAGGCTTGTTGGAGTGATTCTATCCCCAAACCCACTGCCCTTTACCAAGGACCCTCAAAACAAAGAGTATTGGCTGATCCTTGCTCTGTTCTACTACCCTGCTTTGTACTACCCCTTGCTGGCCTGTGGCACGCTCCACATCACGGTCGGCTATGTGCTGGGCAGCCTTTTGTCATGGACACATTTTGGCATCCTCATCTGGCATAAAGTTGACTGCCCAAAAACACCACAGATATACAAGTACCATTCCCTGTTGAGCAGCCTGCCAGAGATTGCCTGTTTGGCATTTCTCAGTTTCCAGTATCCTCTTCTCCTGTTCAAGGGCTTTAAAGGAACAGAGAAAAGCGATCCctttgagGACCTAAAGAGCAGCTACTACACAGACTATGTAAAGAACATCCTCAAAAAGAAGAAACCATCTCAAGCCAGttCAAGCAGCTCTAAACCCAAGCTGACTGAAAGAATCACTTACGCACTCAAGTCTTACATATACACGCCTAAAGAGGtttttaggTTCCCTCTGAAGTTAGCCATCTCTCTGGTTGTGGCATCTATTGCTCTTTATCAGATGGCCCTCTTGCTGGTCATTGGAGTCGTGCCCACTCTCCAGATTGTCCGAAAAGGAGTGAACGAAGACATTGCATTTCTCCTGGCTGGCTTTAACATTATTCTGTCAGATGATCGGAAAGAGGTGGTTAAGATAGTAGCATACTACATGTGGTGTGTTGAGGTGTGCTATGTCTCAGCAGTAACCCTGACCTGCTTGGTTAATTTGGTCATGTTTATGAGGTCCATGGTCCTGCACAGGTCCAATCTGAGGGGGCTGTACCGAGGAGATATCTACAATGTGTATAACTGCCAGAGGAGCATAAGGCCGTCACGTCCTGCCCTGGTGTGCTGGATGGGCTACACCAGCTaccaagctgcatttatttgtcTGGGTATGGTCATCCAGACTCTGGTGTTCTTCATTTGCTTTCTATTCGCTGTCTTCCTCGTCATCATTCCCATCTTATATGGAAAGAATCTTGTGGTCTTCCACATCATTGGCAGAATGTGGCCCTTCTGGTTGACGTTGTCATTGACTGTGCTTATCCAGCACCTTACATCCAGATTCTTCTTCATTAAAAAGGAAGCTGGAACACAAGACCTAACTAACAGGGGGGGTCTGTTCCTTCTGACCTACCTGCTCTTTCCAGTCAATGTACTGGTTGGTGCATTGTTGGGAATTTGGAGGTTGGTCATCACAGCTCTTTTTAACATTGTTCATCTGGGCCGCATGGACATCAGCCTCCTCAACCGCAGTGTGGAAGCTTTTGACACAGGGTATCGCTGCTATGCTCATTATTTAAAGATTGAGGTCAGTCAGTCCCACCCAGTCATGAAGGCCTTCTGTGGGCTGCTGTTACGGTCTCCAAGCCAGGACAAAGGCACTGGAGATGCAGCACGTAATGCGGAGGAAGGAATTCAACTGGTTTCACAGGACAAGAAACAGAACAAGGTGCCCGATGCTAAGCAAGCACGTGGACACTGGCATCTGCTCTACACACTAGTGAATAATCCATCCTTGGTGGGGTCCAGGAAGCACTTTCAGCGACAGAGCTCAGAGAGTGTCCTGAACGGGACCCTCAAACGGAGCTCCAAAGAAGGCAGCAAAAAGGAGGGAGGCACCACAGCAGCCAgcaaagagggagagagacctGCATCTGAGGACTGAGACTGATAACACAGACTAAGAGAcaacacattctctctctgcctttattaaattatattagttATTGGacagattataataataatagtactgtTAGTGTCTGTGTAGAAATGAACTTTGTCTTGAATAAATGCCCTTATACCTTATAGTGCCTCAGGAAGAAGTATAGACTGTTTCCTTTTTTGACTGGATGGATTCACTCTTTCTTTTGtgattaaatgtttgttttttttcatttggtggTTTCTAGTGCAGGATTATCAGAAAATTTACATTGGCACTGAACTCCCACATGAATACTTGTGCACGGTTATACTGGCTATTTATGTATGATGATATGTTATGTATTTCTTTctgagtggttttttttttcatttccatgcTATGTTTCCTGTGCATTCATTACTGTCCTTGCCACCTTTGAGGAGAGATTAAAGATTAATTTGTTTGAAAATACTACcttttaatacaattttaataCATATAGTATAATCTATTTTTCTAGTTAATAAGTTTACAGTCATGCATATTTAGTTTAAGAAAATGTCTCATGTCAgttttgaagaaaaataataagcGGATTTTGCTGTGATTTAAACgattttgtgaaaataaataaatatataaataaataaaagcagtaatAAAAGCAATT

Function

GO:

id name namespace
GO:0009790 embryo development biological_process

KEGG:

id description
K23088 STRA6; vitamin A receptor/transporter (stra6) family protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176828 lncRNA upstream 150175 15771838 ~ 15818368 (+) True G149276
TU176815 lncRNA upstream 213631 15754665 ~ 15754912 (+) True G149268
TU176798 lncRNA upstream 243452 15721348 ~ 15725091 (+) True svip
TU176794 lncRNA upstream 256626 15711013 ~ 15711917 (+) True G149248
TU176640 lncRNA upstream 399056 15567836 ~ 15569487 (+) True G149131
TU177010 lncRNA downstream 44599 16024844 ~ 16026512 (+) True G149427
TU177011 lncRNA downstream 47362 16027607 ~ 16028019 (+) True G149428
TU177169 lncRNA downstream 274439 16254684 ~ 16255314 (+) True G149552
TU177191 lncRNA downstream 348011 16328256 ~ 16328539 (+) True G149574
XR_004578685.1 lncRNA downstream 358345 16338590 ~ 16341963 (+) True LOC117597940
XM_026919885.2 mRNA upstream 63214 15897676 ~ 15905329 (+) True LOC113530122
XM_026918758.2 mRNA upstream 73089 15891653 ~ 15895454 (+) True stoml1
XM_034307515.1 mRNA upstream 77804 15888107 ~ 15890739 (+) True nr2e3
XM_026919786.2 mRNA upstream 77804 15888107 ~ 15890739 (+) False nr2e3
XM_026919672.2 mRNA upstream 86371 15874863 ~ 15882172 (+) True hexa
XM_026919523.2 mRNA downstream 25425 16005670 ~ 16008823 (+) False commd4
XM_026919524.2 mRNA downstream 25441 16005686 ~ 16008823 (+) True commd4
XM_026919794.2 mRNA downstream 29592 16009837 ~ 16014155 (+) True neil1
XM_026918866.2 mRNA downstream 65330 16045575 ~ 16048154 (+) True si:dkeyp-73b11.8
XM_026919968.2 mRNA downstream 68839 16049084 ~ 16060168 (+) False usp3
XR_004578669.1 other upstream 145952 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other upstream 148387 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other upstream 148970 15807990 ~ 15819573 (+) False LOC113529564
trnar-ucg_5 other upstream 2147881 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_003403080.2 other upstream 2193360 13761334 ~ 13775183 (+) False ces2b
trnav-aac_18 other downstream 60930 16041175 ~ 16041247 (+) True trnav-aac_18
TU178368 other downstream 1853992 17834237 ~ 17842535 (+) True G150589
TU178369 other downstream 1853992 17834237 ~ 17842535 (+) False G150589
TU178370 other downstream 1853992 17834237 ~ 17842535 (+) False G150589
XR_004578809.1 other downstream 2694765 18675010 ~ 18683428 (+) False rfwd3

Expression Profile