RNA id: XM_026919996.2


Basic Information

Item Value
RNA id XM_026919996.2
length 1600
RNA type mRNA
GC content 0.43
exon number 6
gene id trpm1b
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16265562 ~ 16267986 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGCAGGTGAACCCCCCTCAGGAGAAGTGGACtgtactcaaacacacacaggtttccTCTACTGATGCTTATGGCACCATCGAGTTTCAAGGAGGAGGATTTGTCAACAAGGCCATGTACATCAGAGTATCTTATGACACCAAACCAGACAACTTGATGCACCTAATGGTGAAAGACTGGCATCTAGAGCTGCCCACACTCCTCATATCTGTTCATGGAGGCCTCCAGAATTTTGACATGCAGCCCAGACTCAAGCAGGTCTTTGGCAGAGGTCTGATTAAAGCTGCGGTGACTACAGGAGCATGGATCTTCACTGCGGGAATTAACACAGGTGTGATCCGCCATGTTGGAGATGCATTGAAAGATCATTGCTCTAAATCCAGAGGGAAGGTCTGTGCCATTGGGATCGCACCCTGGGGAATCCTGGAGAGCAAGGAGGATCTCATTGGAAGAGATGTGACCAGACCTTACCAGACAATGTCCAACCCTCTGAGCAAGCTGGCCGTTCTCAACAGCAGCCACTCCCATTTCATCCTGTGTGATAATGGCACATGTGGGAGGTATGGGGCAGAGGTCAAACTGCGTAGACAGCTGGAGAAGCACATCTCTCTGCAGAAGATTAACACCCGTTTAGGTCAGGGTGTTCCAGTAGTATGCCTGATCATAGAAGGTGGCCCAAACATGATCACTGTGGTCCTGGAGTGCTTGCGTGAGGAACCTCCTGTGCCCGTAGTGGTGTGTGATGGCAGTGGCCGAGCCTCAGACATCCTCTCCTTTGCCCACAAACACTCAGAGCATGAAAGGACAATAAGTGACGCTGCCCGAGACCAGCTACTAGTCAGCATTCAGAAGACCTTCAACTACAGCAAGAGTCAGTCACAGCAGATCTTCCTCATGATCATGGAGTGCATGAAGAGAAGGGAGCTGGTGAGTACATGTATCATGCAATTAGCAAGAAAAAGTCCAAAATGGACATTTTGTAgtctaaaatgtataaaatgcatttgtagatatttatttagaataGGTAAGTACATTGAAGAAGAAAAGATATTATACAGGTATATTTTTGGCCCCCAACATTGTAAATGCACCTTCAAAGGTACAGCACTGTTCCTTATAGACCAGTTAAGTACAGTTACGTTCATCTAACTAAAAGGACAAATTACATCACTGAAGATAACCCTAGGGACAAGTATTTGCatctttttctgagagtgtagtgTAAATATAGATATTCTATACATGCAGACCACACCTTCAACTAAATGACATAAAAAGTGACTGTAGAACTGTAGGGAGAATTTGGGCTGGAGGTCTGGGAAACATCATTGCtagtggagaaagagagaagttaTTTTCCAATGTATCGGATGTTAACTAGCAAGAAGGTAGAGCTTCAGGAATAGTTTTTCTCCAAAATATCAGTTATTTCTTAACTTCATGTATATTATACGTACACATACTGTAGATATCTTGCTATACTATATAACTGGTATAATTGCTTTGTAGCATATTGTTTTGATTAATGAACTGTTCcactaatttatttcattatcttAAAAATCTTTGttaaatgattatatttgtttgtatttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177277 lncRNA downstream 10076 16254647 ~ 16255486 (-) True G149649
TU177268 lncRNA downstream 14477 16249161 ~ 16251085 (-) True G149643
TU177252 lncRNA downstream 27454 16233429 ~ 16238108 (-) False G149631
XR_004578686.1 lncRNA downstream 33753 16230614 ~ 16231809 (-) True LOC117597941
TU177246 lncRNA downstream 37269 16224977 ~ 16228293 (-) False acsbg1
TU177254 lncRNA upstream 41904 16309890 ~ 16317926 (-) True G149632
TU177366 lncRNA upstream 154680 16422666 ~ 16424604 (-) True G149718
TU177505 lncRNA upstream 192805 16460791 ~ 16461045 (-) True G149836
TU177511 lncRNA upstream 228185 16496171 ~ 16498461 (-) True G149841
TU177528 lncRNA upstream 344998 16612984 ~ 16614416 (-) True G149854
XM_026919070.2 mRNA downstream 2623 16256510 ~ 16262939 (-) True LOC113529693
XM_026919995.2 mRNA downstream 11066 16251344 ~ 16254496 (-) True LOC113530180
XM_026918917.2 mRNA downstream 27405 16236143 ~ 16238157 (-) True rps27l
XM_034307238.1 mRNA downstream 37228 16219376 ~ 16228334 (-) False acsbg1
XM_026918913.2 mRNA downstream 37231 16219376 ~ 16228331 (-) True acsbg1
XM_026919384.2 mRNA upstream 57956 16325942 ~ 16362375 (-) True otud7a
XM_026918976.2 mRNA upstream 175469 16443455 ~ 16458395 (-) False bnip2
XM_026918977.2 mRNA upstream 175469 16443455 ~ 16458395 (-) False bnip2
XM_026918974.2 mRNA upstream 175469 16443455 ~ 16458395 (-) False bnip2
XM_034307284.1 mRNA upstream 175469 16443455 ~ 16458395 (-) True bnip2
XR_004578830.1 other downstream 273468 15990080 ~ 15992094 (-) False islr2
XR_004578773.1 other downstream 1037530 15220972 ~ 15228032 (-) False LOC113529695
TU176301 other downstream 1177546 15086123 ~ 15088016 (-) False dynlrb2
TU176092 other downstream 1452857 14810004 ~ 14812705 (-) True G148647
TU175596 other downstream 2432673 13825897 ~ 13832889 (-) False LOC113529512
XR_003403120.2 other upstream 485190 16753176 ~ 16753281 (-) True LOC113530224
TU177725 other upstream 785380 17053366 ~ 17058906 (-) True LOC113529460
XR_003403060.1 other upstream 1486398 17754384 ~ 17760039 (-) True LOC113529452
XR_003403059.2 other upstream 1938167 18206153 ~ 18214487 (-) False fnbp4
XR_003403119.2 other upstream 2036652 18304638 ~ 18304801 (-) True LOC113530223

Expression Profile