RNA id: XM_026920000.2


Basic Information

Item Value
RNA id XM_026920000.2
length 3285
RNA type mRNA
GC content 0.43
exon number 2
gene id islr2
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15981164 ~ 15992094 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGCGCGCACTGGCTTCTGCTCCCACTCGAGCGCATGCAGAGAACTACCTCCGGATTGCTAAGCATCACAGTGAGACGAAAATGTCTCATCTGCTGTCCATCAACAAATATTGCTTCGTTTTCCAGAGTAACATAGGAGTATTAATTATGTTTTGGAATAATTCTCCTTACCACCTCTAGATAAATCGCATCATATTTCATCGAGtgttgttttgatttatttccGTCCGAGGAGTCGGAGTACTCGCGCACAGGAGTGGAAAATGGCGACCAGATACTTGGTGCTCCTTGCCTTGGGGACTGCAGTGATTACCCTTGCAGTGACTGTGCAGTGCTGTCCTAAGCAGTGTACTTGCTCCGACAAAAACCCCCATCACTTTGTGGACTGTGCTTACAAAGAACTTCAGATGGTACCTGGGGGCTTGCCATCCAATGTGACCACTCTTAGCCTTTCAGCAAACAAAATCAAAGAGTTGAAATCCCAAAATTTTGTGAATGTGACCCAGGTTACATCTCTTTGGCTGGCCCACAATGAAATTGTCACCATTGAGAGAAACACGCTGGCACCAATGTACCAGTTAAGGAATCTGGACCTAAGCAATAATAAAATCGTAAATTTCCCATGGGAGGACCTTGCTAATCTCACTGCTCTGCAGCTGCTGAAAATGAACAACAATGAGATGGTCAGTTTGCCTAAGGACGTTTTCGCCAACTTGAAAGATCTGCGTTCAGTTCGCATCAACAATAACAAGTTTACTACCATTGCAGAAGGAACTTTTGATGCTCTTATCTTCATGTCACACCTACAGATTTACAACAATCCTTTCACCTGTTCTTGCAAACTGGAGTGGATGAGGGATTGGATCATTAAGTCTAAAATTTCCATTCCTGAGCAGAACAACATCATATGTGCGGCGCCCGTCCATTTAAAAGGTTTACAGGTCACTCAAATGCCAAAACTGGTATGTCAGGCTCCAACTGTAACCATAACCTATCAGCCCAACATTGAAAACACAGAAATTCATGAGGGGTACAGGGTCATCTTAAACTGTGAAACTAAAGGGAGCCCCAAACCTGATGTTGAGTGGGAAGTATTTGCAGGAAACCAGCTATTAAAATTCCCATTGCCCTCAGTTGTTGAAAATAGTGAGGTCCCTATTAACGGTGCACCCTCTAATACAAGATTCCtcatttttcaaaatggaaCTCTAATCATTCCTCGTATGAGCAAAAAAGAAGATGGAAACTATAGCTGTTCTGCTACTAATAGCATGGGCACAGCTGAAAACACAGTGAAACTTGCAATGGCTGTTACTAAAAAAGAAACCATCAACTCTGTGCTGGACACAAAAGAACGTATAGGTCCAACTGACAATAAGCCTGGCCCAAAGAACCCCAAAAACAATGTATGGCCCATACATGAGAAGCCCAAAATTCTTCCAACTGGAGCATCATCCATTAATATTAAACCTGAACAGGTTCATCCTGATACTTTACCATCTACCAGTAAGTGTGGAATAAGTGATGGTACACAGTATATATCCAATCATGCATTTAACCTGAGCTTGGATGACCTTAAACAGTATACCTTTGACTTTGGGGTGATTGCTTTGGAGGTGTCAGAAACTGAGGCTAAAGTCCAGCTTAATCCTCTACAGATGGCAAATGCCAAATCAAACCTTCACCTCAACCAACCCCAAGACCTGGAAACTGTGAATAAGGAACCGTTCACTCTTTACCAGACACCATCCAAAAAATCTCCCATGGACatgctgtatgtttgtgtgagcACTGGCAATGGACATTCAGTTGTTCAGTGGTCCAAGATCGAGGACGGTGTCAATACATATCGTTTCCAAGGTTTACGGCCAGGCACTAATTACACTCTGTGCCTCACCTATGGAGGCCAGGACTGCCAGGTCCAAGTTGTCTTTACGACAAGGAAGAAAATCCCATCATTGCTTATCATAGTGGTGGTCAGCATTTTCTTGCTGGCTCTAGCCACAGTGCCCTTGCTAGGAGCCACCTGCTGTCACTTGTTGTACAAGTATCAAGGGAAGACCTACAAACTGATTATGAAGACGCAGAATGCAGATCAGATGGAGAAGCACATAGCAACAGATTTTGATCTGAGAGCCTCTTTTGTGGGATCGGAGAAAAACTTCAACGCGAGTGAGCTTGGTGAGGGAGACGCTGAAGCTGATGTGGAGGAAGGAGAAGGGGAAGGTGAGGAAGTCGAGGGCAGTGTGGTGACTGAGTCCATTCCTGAGTCGCAGTCCAAAACTCAGGAGGAGTTTGAAGTGGGGTCTGAGTATAGTGACAGGTTACCTTTAGGGGCTGAGGCAGTGAATATATCTGAGGAAATAAATGGCAATTATAAAGACCCGCGCTAAAACCAACAGTGTGAAAAATATTTACCTTTCGAACGCATTCCAAACCAGGTAAATACCGATGAGCACATCACCTTGCTATTGTAATACTCTGCAGAAGGTGCATTAATTGTATTTTACCTCAGTTATTTAGcagtaaatgtatatatttcatattgGTTCTTGGGTTTTTATAAATAGCCTATCTCTATGAACAAAAGGAATTTATTCCAACACACCTCACACTGAGTTGTACATTCAGCTCAACGTTAAAACCATCACCTGGAAAGTCTTAGCATCCCTGCATACATGTAAGAGAGTGTGGAATTCATAGTAACAATCAGTCACTAATAAATGTCCTTTAACTGAGGGCTTTGGTAAACGTAATGCTGCGTTCACACTGCGCGCCTGGAGAGTACAACATGTTCATCAGTGATCGTGCACAGATTGTTACTTCTGAAAGGGAATCCTTTCACTTCATGGCATGTGCGGAAAAAAGTAGGCTAAAAAAACCCAGGTCACCTTCAAGTGACTTCAAgttttgtgtaatgtgtgacTTCAGATCTCCTTTAAGGAGCGGGTGCTTAAGAAGATCCTCTCGCCTTTTTGGATTGATTGAACGTCTCCTTTCTCTAGTTTAAGGTAACTTGTTCGTGGCATGTCACACAAGAAGTATTTCCGAGTGTGTTTTATTAGAGTATATAGGACGGTAGATATTCTCAGTGTCGATAtgtggtgtaaagtgtaaagatgTCCTCTTTTTTTATATCTCAACCGTCACATTTCACCATCAGCCTGTACGCACGTCCCGCTTAGTGCTTTGTGTCGAGCTGTCCAACTGATGTTGTGAACCATCTTTTCACAGATTTTGATATGATTTTATGTACGTGAACTTAATAAAAATACTTATGAATA

Function

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176932 lncRNA downstream 77262 15903692 ~ 15903902 (-) True G149366
TU176930 lncRNA downstream 78522 15902440 ~ 15902642 (-) True G149364
TU176929 lncRNA downstream 83003 15897890 ~ 15898161 (-) True G149363
TU176874 lncRNA downstream 222663 15758284 ~ 15758501 (-) True G149312
TU176867 lncRNA downstream 228694 15751159 ~ 15752470 (-) True G149305
XR_004578675.1 lncRNA upstream 83409 16068429 ~ 16092930 (-) False LOC113529609
XR_003403074.2 lncRNA upstream 83409 16068429 ~ 16092930 (-) True LOC113529609
TU177091 lncRNA upstream 108052 16093072 ~ 16095175 (-) True G149495
TU177243 lncRNA upstream 156099 16141119 ~ 16219622 (-) False acsbg1
TU177253 lncRNA upstream 195886 16180906 ~ 16238108 (-) True G149631
XM_034307716.1 mRNA downstream 44586 15904320 ~ 15936578 (-) False ccdc33
XM_034307717.1 mRNA downstream 45639 15904320 ~ 15935525 (-) False ccdc33
XM_034307718.1 mRNA downstream 48333 15904320 ~ 15932831 (-) False ccdc33
XM_026919884.2 mRNA downstream 48692 15904320 ~ 15932472 (-) False ccdc33
XM_026919883.2 mRNA downstream 50209 15904320 ~ 15930955 (-) False ccdc33
XM_026919790.2 mRNA upstream 12869 15997889 ~ 16005363 (-) True sema7a
XM_026920064.2 mRNA upstream 29900 16014920 ~ 16024858 (-) True man2c1
XM_026918767.2 mRNA upstream 43135 16028155 ~ 16043550 (-) False ca12
XM_026918769.2 mRNA upstream 43135 16028155 ~ 16043548 (-) False ca12
XM_034307143.1 mRNA upstream 47891 16032911 ~ 16043852 (-) False ca12
XR_004578773.1 other downstream 753132 15220972 ~ 15228032 (-) False LOC113529695
TU176301 other downstream 893148 15086123 ~ 15088016 (-) False dynlrb2
TU176092 other downstream 1168459 14810004 ~ 14812705 (-) True G148647
TU175596 other downstream 2148275 13825897 ~ 13832889 (-) False LOC113529512
trnar-acg_1 other downstream 2190619 13790473 ~ 13790545 (-) False trnar-acg_1
XR_004578830.1 other upstream 5060 15990080 ~ 15992094 (-) False islr2
XR_003403120.2 other upstream 768156 16753176 ~ 16753281 (-) True LOC113530224
TU177725 other upstream 1068346 17053366 ~ 17058906 (-) True LOC113529460
XR_003403060.1 other upstream 1769364 17754384 ~ 17760039 (-) True LOC113529452
XR_003403059.2 other upstream 2221133 18206153 ~ 18214487 (-) False fnbp4

Expression Profile