RNA id: XM_034307721.1


Basic Information

Item Value
RNA id XM_034307721.1
length 2837
RNA type mRNA
GC content 0.52
exon number 20
gene id brsk2a
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 12207975 ~ 12397868 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGAGGAGGCGAGAGATCAGTCGCTTACACAATGCTCCTCGGACCATAAACACTGCGCtcacctgctgctgctcctgctgctgcttatactaatactgctactgctactgctgctgctactgctgctgccaAGGAGACCGGAGACACAACGGCACACTGAGTTTATTTgttataaacaacaacaacaacaacaaactatCCATTAAAGTGGAAGcgaagacagaagagagagagagagagagagagtgacggGAGGAGGCAAGCAGCGGACCCTGGAATAGgacaccaccatcaccaccaccatcatcatcatcctcatcctcctcagcTGAGATTAAAAAGGATCACTCTTGTCCTCTGTGTCTTTTTAGAAGACAAACATGTCCTCGTCCGGGAAAGAAAACAGTGCCGCCCAGCATGCCAATTACGTGGGACCGTACCGCTTGGAAAAGACGCTGGGGAAAGGACAGACAGgCCTGGTGAAGCTGGGAATACACTGTGTAACGTGTCAGAAAGTCGCCATAAAGATCGTCAACCGAGAGAAACTCAGTGAATCTGTCTTAATGAAGGTGGAACGAGAAATCGCTATTCTCAAGCTAATAGAACACCCACACGTTTTAAAGTTGCACGACGTCTacgaaaacaaaaaatatttGTATTTGGTTCTAGAGCACGTGTCTGGAGGAGAACTGTTTGACTACCTGGTGAAGAAGGGGAGATTAACACCCAAAGAGGCACGCAAGTTCTTCAGACAGATCATCTCTGCTCTGGATTTCTGCCACAGTCACTCCATATGcCACCGGGACCTGAAGCCTGAGAACCTGCTGTTAGATGAGAAGAACAACATCAGGATAGCAGACTTCGGCATGGCCTCGTTGCAGGTGGGAGACAGCCTCCTGGAAACTAGCTGTGGGTCACCTCACTACGCCTGTCCTGAAGTCATccggGGAGAGAAATATGATGGAAGGAAAGCAGATGTATGGAGCTGTGGGGTCATTCTGTTTGCTCTACTGGTGGGAGCTCTGCCGTTTGATGACGATAATTTACGAAACTTGTTAGAAAAAGTGAAGCTGGGAGTGTTTCACATGCCACACTTCATTCCTCCAGACTGCCAGAACCTTCTACGAGGAATGATAGAGGTGGATGCTAGCAAACGGCTTACGTTAGAACAGATCCAGAAGCACACGTGGTACATCGGGGGAAAGAATGAGCCAGAGCCCGAGCAGCCTGTGCCGAGGAAGGTGGCAATCCGCAGCCTGCCGTCGGCCGATGACATCGACCCGGACGTACTGGAGAGCATGCACTCGCTTGGCTGCTTCAGAGACAAGAACAAGCTGATGAAGGACCTGCTGTCAGATGATGACAACCAGGAGAAGATGATCTATTTCCTGTTGCTAGACCGGAAGGAGAGGTACCCGAGCCATGAAGACCAGAACCTCCCGCCACGCAATGATATAGACCCCCCACGGAAGCGAGTGGACTCCCCCATGTTGAACCGGCACGGGAAGAGGAGACCAGAGCGCAAGTCCATGGAGGTGCTGAGTGTCACAGACGGAGGATCACCAGTGCCAGCACGGAGAGCCATCGACATGACACAGCATGGACAGAGTAAAGCAATGTTCAGTAAAAGCTTGGATATCTCTGACGCCCCTCTCACGTGCAGCAAAGAGGAAAGgTCACGCTCTATCAGCGGAGCATCCTCGGGTCTCTCCACCAGTCCTCTCAGCAGTCCAAGGGTGACCCCTCACCCCTCCCCCAGGGGCAGCCCTCTGCCCACTCCCAAAGGAACGCCTGTCCACACGCCGAAGGAGAGCCCTGCAGGAACGCCGACCCCCACACCGCCTCCCAGCCCCTCCATTGGGGGTATGCCCTGGAGGACACGTCTCAACTCCATCAAGAACAGCTTCCTGGGCTCTCCACGCTTCCATCGCAGGAAACTACAAGTTCCTACCCAAGATGAGATGTCCACCCTCACACCAGAGTCTTCCCCGGAACTTGCCAAAAAGTCCTGGTTTGGTAACTTTATCAACCTGGAGAAGGAGGAGCAGATCTTCGTGGTGATCAAGGACAAGCCTCTGAGCTCCATTAAGGCAGACATAGTGCAAGCGTTTCTGTCGATCCCTAGTCTCAGTCACAGTGTGATCTCCCAGACGAGTTTTCGGGCAGAGTACAAGTCTACAGCAGGTCCCACTGTCTTCCAGAAGCCTGTGAAGTTCCAGGTGGACATCACTTACACAGAGAGCAGCACGGCCACGAAGGAGAACGGCATCTACTCCGTCACTTTCACCCTGCTCTCAGGTCCGAGTCGGCGCTTTAAGCGGGTGGTGGAGACGATCCAGACGCAGCTGTTAAGCACACACGACCAACCGGGAGTCCAGCAGCTGGCTGGCAGCCCATTGAGTAACTTCTTTGACGTAATTAAACAACTTTTTTCAGACGAGAAGAACAGCCAGGTGCTCCATCCACCTGGCACGCCCAACAGACACCCGCGGCACGATCCCGAGCCTAGTGACTCTAAATGCCTGGCAGGCAATGCCAGGGACAATGCCAGGATGGTGGCTTCTGTTGGGACGCAGGAGCAGCCCTAGAGACCTGTAGAAATAATACAATCATACTCACTGACTTACGTACTGTCAGCAGTGATGCAAATAATCTTGTCCAATAGATTTTTGTATGATGGAATGACTGTATAAAGATGAACATGTAAAGATGAGCACATCTAGACACACTCTTCCCCCATGCCATTCCCCTCATCATTTGTGACaggctttcattttttttttgtttttcatggcTTTTCTTTTGTGTCCACTTTCCTCACTTGTGTGATGACTTGT

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174004 lncRNA upstream 107409 12092180 ~ 12100566 (+) False G146883
TU174005 lncRNA upstream 111814 12092180 ~ 12096161 (+) True G146883
TU173998 lncRNA upstream 147389 12060295 ~ 12060586 (+) True G146877
TU173883 lncRNA upstream 278155 11925868 ~ 11929820 (+) True G146791
TU173854 lncRNA upstream 377178 11801077 ~ 11830797 (+) True G146765
TU174634 lncRNA downstream 294145 12690201 ~ 12690479 (+) True G147436
TU174636 lncRNA downstream 294871 12690927 ~ 12691422 (+) True G147438
TU174670 lncRNA downstream 414466 12810522 ~ 12811329 (+) True G147472
TU174677 lncRNA downstream 435772 12831828 ~ 12832066 (+) True G147479
TU174762 lncRNA downstream 536825 12932881 ~ 12937704 (+) True G147554
XM_026918639.2 mRNA upstream 34558 12163982 ~ 12173417 (+) True LOC113529450
XM_026919333.2 mRNA upstream 46540 12144465 ~ 12161435 (+) True hrasa
XM_026918699.2 mRNA upstream 137211 12064417 ~ 12070764 (+) True irf7
XM_026919570.2 mRNA upstream 196465 12006270 ~ 12011510 (+) True thg1l
XM_026919978.2 mRNA upstream 210796 11964137 ~ 11997179 (+) True abca1b
XM_026919431.2 mRNA downstream 183304 12579360 ~ 12598845 (+) True LOC113529869
XM_026919997.2 mRNA downstream 215985 12612041 ~ 12617420 (+) True spty2d1
XM_026919319.2 mRNA downstream 223157 12619213 ~ 12628497 (+) True uevld
XM_026919481.2 mRNA downstream 270933 12666989 ~ 12674581 (+) True th
XM_026919747.2 mRNA downstream 284684 12680740 ~ 12684821 (+) False igf2b
XR_004578672.1 other upstream 901657 11295128 ~ 11306318 (+) False hrh2a
XR_003403100.2 other upstream 904029 11295128 ~ 11303946 (+) False hrh2a
TU173183 other upstream 1660183 10543875 ~ 10547792 (+) False si:ch73-233f7.1
TU172076 other upstream 3365709 8841476 ~ 8842266 (+) True G145233
trnaa-agc_11 other upstream 4163565 8044338 ~ 8044410 (+) True trnaa-agc_11
TU174750 other downstream 520863 12916919 ~ 12917254 (+) True G147542
TU175114 other downstream 953270 13349326 ~ 13353253 (+) False zgc:172145
XR_003403080.2 other downstream 1365278 13761334 ~ 13775183 (+) False ces2b
trnar-ucg_5 other downstream 1424534 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_004578669.1 other downstream 3411934 15807990 ~ 15822591 (+) False LOC113529564