RNA id: XM_026920041.2


Basic Information

Item Value
RNA id XM_026920041.2
length 4420
RNA type mRNA
GC content 0.39
exon number 7
gene id scamp5a
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17459490 ~ 17467526 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgctgaCATACATAGTCCCTGTGTGTAGAGCTGACATACATAGTccctgtgtgtggtgctgaCATACATAGTCCCTGTGTGTGGAGCTGACATACATAGTCCCTGTGTGTAAAGACTTTTTGGAGAccctctattctattctattctattctattcgcTTCAGCACCAAGGAGAGCGACTAGTGAGCTCACTGAAAACAGGAGAGACGGTACAGGAATGAAATATCGCGATTACTGAGCAGCTCTGCTCGTTGGTCGAATCTcttcagcatcatcatcatcatcatcatcgtcccTACATCTGAGGCGGAACGGAAGCTAGGCGACACACGGCGTGTAGGAGGATCGTGACGTGATTGTTGTATTTTAAATCTCAAATCCGTAATCAGATGAAAAGAAACCAGACAGCTGACGAAAAGAGTCTCTGCTGTGAATGTGGAGTCACCTTGAATGGAAAGTTGTTTATCAGAGTCGACGGATCAGCGTGCTTGGTTAGCCTGAGGACCGAGGTGAGGTTACAGAATATTGAATTCTGACGTCAGGAATCTAAAAAAGAATCTTCATGGCAGCCTTAGAAAACAATTTCCCACCTCTCCCCCGTTTCATTCCCCTGAAGCCATGCTTCTACCAAGACTTCAACGAGATCCCAGAGCAGCGCCGCACCATGTGCAAACGCCTGTACTATCTCTGGATTTtgaACAGTGCTACATTGGCggtgaatctgattggctgtctggCATGGATGTGCGGTGGGGGCGGGGCCACTAACTTTGGAATGGCTATATTGTGGCTTATTCTCTTCACCCCTTGCTCTTATGTGTGCTGGTTCCGGCCCATCTACAAAGCCTTTAAGACTGACAGCTCTTTCAACTTCATGGCATTTTTCTTCGTATTCATGGCTCAAGTCGTGATCAGTATTATCCAGACAGTGGGCATCCCAGGCTGGGGAGTTTGTGGGTGGCTGGCCACCATCACATTCTTCAGCACTAATATTGGCTCTGCTGTGGTCATGCTGATTCCCACTATTATGTTCACAGCTGTCGCTGTGCTATCTTTCATCGCCCTTACCAAGGTCCATAACTTCTACCGTGGCAGTGGAGGGAGCATGAGCAAGGCCCAGGAGGAATGGGCAACAGGTGCTTGGAAAAACCCCCATGTACAACAAGCAGCCCAGCAGGCAGCTATGGGTGCAGCCCAGGGAGCAATGCAGGGCCAACAGTACTCGGCCCCTCCTACCTACAACTATAATGACCCTatgtaatgtgtattttttagGAAAACAGTTAGGAGTGTTAGGCCTGTTTTATACTTGACACGTGACTATGCTTGTGTATGCAGACTCAGCCGCAATGTGAGGGAACAAACAACATCCACATCACGTCAGATGGCATGTCAgtgccaaaacatccctgtccatcaggtttccatgTTGTATGCAAAAcagacttttctttttcctgtacTAGGGAAATTGATTAGTGGTAATGCACAAAAACTGTCTAGAATAGTACCTAGAGTAAGTGTGCAATTTGAGGCTCAACTATAGTTTGTTCAGACTGTGGCAGATATTATGTCACATTGCACTATACTGCCTACACTATTTAGGTTGGGCACTGAACACTTGCCTGCTTCAACAATCACTGTACCACATGCCCACAAACATGCACAATCGACACGCCAAATAAACGCAGGATATGTGTGGATGCCATCTTCCATACGCATGTGCatagttaaaagcaagtataaaCCTGGCCTTACAAGGGTATTAGGGAGGGAGAAGGGGGGTTAACAAAAAGAATTAGAGTAAATAACTGaccaatttcattttaaacaacaatacaataatgcataaaaaattGCCTCAGTTGTTGTGTATGGTAGTGTAAAGTATTGTTTTTGTTCTCAAGAGTAGGGTTTCTCAACTCATACCCCAGAGGCCCACTGCCCTGCAGTTTCATGTTCCTTTctcctaacacacctgattcagctcagaAACTAATTATCAAGCCTTCTGCAGGTTGAATCTAGAATGTTTGGGAGTAGGGAAAGCTTGAAATTGAGACTCTGGACCTCCAGGACAGGAGTTGAGATGTGCTACACTAGACCCTACCAGTAATAGATTATGTCTTTGTGGTATCAAGACATTTGTAATGGCTGTGTTCTATTCCCCCCAAAAGTATGATTCAACTGAGGAAACATTCCATTGTGTTTATGTAGTATTAGAGCCCTTGATGAGCCATCTGTATCTTTGTATTTCTATATGGTTATTTGACATTAAATCAGCTAAAGGCTAACACTAGAAGTAATAATTGTAAAGCAGTTACAATGatttatgtgaaataacttAGTAATAAATACAGCAAGTGACACAGTTCCTCAGTCTTTATCTAGCATCATAATTTGCCTTTTACTAGATCTTAAcaatttgtcttgttttttaatTACCTCATTCTAGTTTGTCTGCAAGGACACAAATAGCCATACACTTATACGCTTACTTTTGATTGATTGGTTTTGTAATTGTATAGAGTGCggaaatgtgtttaatattttctgatttattttatcaaATTTTACAGTTTGGCTGTGCTGATATTTCTTTGTACCTCATATAGGATTCAAATAGTTCTGTTTATAGGTGAAAGGTCAACCTAAGGAAACTTTTGATAAATTTTAGTCAAGAGCTGCAtttacaaaaacatgctggCTTTAAAATGGTCTTTGGCTATGTCTTAGAAGAACTGAAGTGTATCCTAAAATCTTTACATAAACTGGACTTCAGTGCCTGCATCAAGAATCACTGAGCCAGGAAATACTGATTTGTTATAAATCACTTCAGGCCTAATCTGATTTAATGTTGTCTTTGCCATTATTGCAGTGAAATATTGAATTACTTCagctttaatatataataattaattccAAATTGGGGAATAAATCATTCTGTCCATTTTGGTGAAGGAATACAGTGTATTGACATATTTTGTTGAGACATTTATTGAGGAAAAGCAGGAGTTAAATGCCTGCAGGAAAAGCACACTAATCTCTGTTTGAATTACACAGGAATTATTACTAGTGTGAATCCATTAAAACACAGAATTTTGTTACTTCCAAATAGGAATAGGGATTTTTACCATAATACttaattttgtgtaaatatttgctgTGATATAGTGACTAGTACTTGTTGTGAAAAATTCTCATATTACATGGTTTTGAATATATGTAAATCCTTGAATCCTTGTCAGCTGATAAGGCTGTTATATCTCAATACATGTAATTTGTGTAATTAATACAGGACAGACTATTGTTACAGATATATGTTTATAGTGACACTTGAACTTATCCATAGTCTGAATGAGTTAGTGGGATGTGGTTAGGTTTTAAGCTACAGAACTAAACAGTCCTTATATACTCTTAAGTATGCTTAAATTAAACCAATATAAGAAAACGAATAAGTAAATAGATTGAGATTACACCATACATGTAAAGTTTATGAACTATGTAATCAAAGTGTCTTAAACAAGGCTTGTAAGATAGCACCTCATCCCAAGAACTGTGAAATGGTCCATGCTTAAGTATcatgtgtatattaatgtgtatGTTTGCAGCTCTATAATTTGACTTCTGTAAagacttttgttttttaattattattatcttttagCAAGTGCGTGAGGCTTTAATGTTCAGTGTATCGTAGCTGTTTCACAGGTATTGTCTTGGGCCTTAGTTAACAAGGACCATAATATTTAGGGCTTTAGGCATAGTGTTGGTAGAAATTGCCAGTTTTCTGGACTGCCCAAGAAGCTGGTACTGGATCagcataaaaatgtaatctaCTTCCCAGAGCGATTTAATTCCCTGCTGTTGTCCACAACTTTTTACTGCCCTAAAAATGCTGACTTCCCATTTGAATTCCCATTTGGTATTTCCAGAGCAGAGTTTACCTAGATAAAAATATCTGATAACCTAAAAGTGTAAAGAGTAATGTGATGAAATTATATTGACATCAAGTTTTATGTCAGATGCACCAGCAGCAGCAAAGCCCAGTGTCTGTTGCCAACACCTACTACAGTCTAAAGCTTATATAGTAACACTATTAAAAGTAGATAAAGCCTTGTTTATAGTGTAAAGTGAATGAGTGGCAATTGATAATAGAACTAAAAAGGTAGTTGTCTATGTATGGTGTGTCATGTGGTGCTTGGTAAATCTGTGAATCTAATCAAACCTTGTGCCATGTGTAGATAGATGTTATTTgtgtgttgatgttgatgttactGCTGTCCACCCCAACATGGAATGTATTGTTGACTTCAGGGAAAGAGCTACATATAAAATCCACATTaagggttttctttttctctttttttatttttgtgttttatgttggtATAATAAACATTCCTTTCTGATATAAA

Function

GO:

id name namespace
GO:0045956 positive regulation of calcium ion-dependent exocytosis biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0055038 recycling endosome membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K19995 SCAMP; secretory carrier-associated membrane protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178012 lncRNA upstream 2357 17456920 ~ 17457135 (+) True G150268
TU178009 lncRNA upstream 13032 17446249 ~ 17446460 (+) True G150265
TU178004 lncRNA upstream 25115 17430143 ~ 17434377 (+) True G150261
TU177846 lncRNA upstream 204155 17253667 ~ 17255337 (+) True G150152
TU177842 lncRNA upstream 222546 17236641 ~ 17236946 (+) True G150148
TU178163 lncRNA downstream 235028 17702554 ~ 17702758 (+) True G150407
TU178372 lncRNA downstream 365240 17832766 ~ 17840449 (+) True G150590
TU178374 lncRNA downstream 444111 17911637 ~ 17912583 (+) True G150592
TU178394 lncRNA downstream 447099 17914625 ~ 17915242 (+) True G150609
XR_004578772.1 lncRNA downstream 663320 18130846 ~ 18139145 (+) True LOC117598020
XM_026919921.2 mRNA upstream 11835 17445361 ~ 17447657 (+) True si:ch73-330k17.3
XM_026919955.2 mRNA upstream 15818 17437234 ~ 17443674 (+) True eif3ja
XM_026919689.2 mRNA upstream 36027 17420208 ~ 17423465 (+) True duox2
XM_034307110.1 mRNA upstream 136634 17316673 ~ 17322858 (+) False zgc:101540
XM_026918879.2 mRNA downstream 1394 17468920 ~ 17473913 (+) True LOC113529594
XM_026918934.2 mRNA downstream 13936 17481462 ~ 17489363 (+) False LOC113529627
XM_026918935.2 mRNA downstream 14615 17482141 ~ 17489363 (+) True LOC113529627
XM_026918936.2 mRNA downstream 23309 17490835 ~ 17496461 (+) True ubl7a
XM_026918932.2 mRNA downstream 31791 17499317 ~ 17504445 (+) False LOC113529626
trnav-aac_18 other upstream 1418245 16041175 ~ 16041247 (+) True trnav-aac_18
XR_004578669.1 other upstream 1636901 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other upstream 1639336 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other upstream 1639919 15807990 ~ 15819573 (+) False LOC113529564
trnar-ucg_5 other upstream 3638830 13820590 ~ 13820662 (+) True trnar-ucg_5
TU178368 other downstream 366711 17834237 ~ 17842535 (+) True G150589
TU178369 other downstream 366711 17834237 ~ 17842535 (+) False G150589
TU178370 other downstream 366711 17834237 ~ 17842535 (+) False G150589
XR_004578809.1 other downstream 1207484 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 1254069 18721595 ~ 18724686 (+) True urahb

Expression Profile