RNA id: XM_026920051.2


Basic Information

Item Value
RNA id XM_026920051.2
length 1473
RNA type mRNA
GC content 0.41
exon number 7
gene id amn1
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18297594 ~ 18302925 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCTGTGACTGTATCAAGAATACCCTTAGAATACCCTGCAATAAAATATCAGTAACGCACACCCTCCCAGTTTACAACCCTCTAgaatacttttattttgaacttTCCAGTAAacctttattttgaaatatagcGTCTCATTATGACCGGAAGTCGTGTGTGGGTCTGCAGATGTAAACAATGTTGGGCTGACAATGACaacagtgtgtataaactgACCTGCGTGCTCCCTGCAGTTTCTTTTAAATATAAGGGAACATACTAATACATTAGACATTTCGTTCTTCTAGTCAAGACTTTATTCATACGCCGTTCAACAGAATCGTGTGGACTGAACTGTGACTGACAGCAGGCCTGATGATGGATTCTTTATTAGATCTgagtgcagtgtgtgtggctcAGTATGCAGACCAGTATATTGAGTGCATTAGGACTTTACCATTCAGCGTCAAGGACAAACTGCTACGAATAATGACGGCTAAAGGCACTCTTACCGATTCCAACATAAGTCAGCTCCTGCATGCAGGAATTCACACCCTCGGCCTGCAGAACTGCAAGGTTTCAGACTCAGCACTCAGACAAATCCACTGTCAGCAACTAAAGACTATAATACTAAAAGGATGTGTGAATATCACATCAGAAGGTCTGAACGCCTTGGCCTCACACTGTAGGAGTCTTCAGGTAGTTGACCTCACTGGATGTGCAGCTGTAACTGACTCAGGTGTACGAGCGCTGACGCGGAGCTGTAAGCGGCTAGAGGTTATCTCCCTCAATGAATGCCCTGCAATCAGTGATGTAGCCCTGATCGAGCTAGGGGCTAACTGCAGGTGTCTGTACAGCATCGATTTTAGTGGGACAGACGTCACTGACGAAGGTGTTATTGGTCTTGTAACTGGAGTGTGCTGCCAGAGCTTAAAGGAGTTACAGATGGTACGGTGCCGTAACTTAACAGACAAGGCTGTGGCTGCTGTTCTCTCAAACTGTGTCAACATCAGAATATTCCTTTTTCATGGATGTCCCCTCATTACAGATAAATCCAGGGAGGCACTTCATAACCTTATCGGGCCTAAAAAGATTCAGCAGGTCTCCTGGACTGTATACTGAGTCTACTCTAATTCATTCTTTGAGCTCATGCAGAACATCCACACACCTGTTATTGCATATAAAAATCTACAGTGGAAAAACACATAGTAAACACATGCTAAAATCAGTTTGACTGTAACAAGTCACAGGTGTCACTGCTAAACTCACACATAATCTACAAGATTACAGTTTGTGTTCTGAGCTGTTGAAAGTGTCCATAGCTCAGATGAAACAGGTGAATTTCAGTAATGTGAATATGCTAAATATTAGTAACACAATACGTttgttgtatatttatttacactaactttataaagcactttttgGATGTAAGAACTTTCATTCTTGTTAATGTCTATTTCTTAATAAAATCtttgatgaagatgaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178595 lncRNA upstream 113584 18182555 ~ 18184010 (+) True tmem17
XR_004578772.1 lncRNA upstream 158449 18130846 ~ 18139145 (+) True LOC117598020
TU178394 lncRNA upstream 382352 17914625 ~ 17915242 (+) True G150609
TU178374 lncRNA upstream 385011 17911637 ~ 17912583 (+) True G150592
TU178372 lncRNA upstream 457145 17832766 ~ 17840449 (+) True G150590
TU178695 lncRNA downstream 39318 18342243 ~ 18345729 (+) True G150873
TU178734 lncRNA downstream 63957 18366882 ~ 18367108 (+) True G150900
TU178777 lncRNA downstream 120633 18423558 ~ 18424220 (+) True G150933
TU178775 lncRNA downstream 122392 18425317 ~ 18444052 (+) False G150932
TU178776 lncRNA downstream 122392 18425317 ~ 18444052 (+) True G150932
XM_026919266.2 mRNA upstream 892 18276911 ~ 18296702 (+) False si:ch211-106e7.2
XM_026919263.2 mRNA upstream 897 18276911 ~ 18296697 (+) True si:ch211-106e7.2
XM_034307359.1 mRNA upstream 42824 18245570 ~ 18254770 (+) False slc41a2a
XM_026919581.2 mRNA upstream 42824 18245858 ~ 18254770 (+) False slc41a2a
XM_034307360.1 mRNA upstream 42824 18245858 ~ 18254770 (+) False slc41a2a
XM_026919594.2 mRNA downstream 3316 18306241 ~ 18317725 (+) True LOC113529962
XM_026919596.2 mRNA downstream 3316 18306241 ~ 18317725 (+) False LOC113529962
XM_026919595.2 mRNA downstream 3316 18306241 ~ 18317725 (+) False LOC113529962
XM_026919597.2 mRNA downstream 3317 18306242 ~ 18317725 (+) False LOC113529962
XM_034307370.1 mRNA downstream 3317 18306242 ~ 18317725 (+) False LOC113529962
TU178368 other upstream 455059 17834237 ~ 17842535 (+) True G150589
TU178369 other upstream 455059 17834237 ~ 17842535 (+) False G150589
TU178370 other upstream 455059 17834237 ~ 17842535 (+) False G150589
trnav-aac_18 other upstream 2256347 16041175 ~ 16041247 (+) True trnav-aac_18
XR_003403067.2 other upstream 2478021 15807990 ~ 15819573 (+) False LOC113529564
XR_004578809.1 other downstream 372085 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 418670 18721595 ~ 18724686 (+) True urahb
XR_004578793.1 other downstream 773670 19076595 ~ 19077868 (+) True LOC117598072
TU179056 other downstream 818239 19121164 ~ 19125132 (+) False faap24
TU179313 other downstream 957699 19260624 ~ 19263893 (+) True G151401

Expression Profile