RNA id: XR_004578649.1


Basic Information

Item Value
RNA id XR_004578649.1
length 2326
RNA type misc_RNA
GC content 0.47
exon number 23
gene id parp6b
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18353974 ~ 18364036 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGCCAGCACGGGGAGAAACAGGGCCAGCGACAAATGCGAGACAGGGCCGGGCTAGCAGCTGACACGGACAGACAGAGAAGCACACAATGAAACCTTTTTCATAACTGCCCATTGGCTATCATTTCTCTCGTGGTCTTTTTTAAGTGTTTCGTTTAATTAATGCCACATAAAATACGGAGAATCTTCACTTCCCTGTTCTCAGAAGGAAAGAGGTAAAATCCACCTTCATGATGCTGAGGTTGTTTTGGGATGGTTTGGGATTACTCAGCCATTCTGGCTGAATAAGCATCATCTTCATCCTGGTTGTAATGCTTGACCTCATCACAGAGTCTAAACCAGATCGCAACATACTGTGCTTGGCAAAGTCCTCATCACTGGAATGGAAAGGAAGGGCAACAAAAAGTCACTGGAGCTAAATCTATGATCAGCATGAGTGTCAGTGAGCAGTGCTGGAGTGATGAGGATTCAGATGGGGACAGTGACTGTGAAAACATCATCTATGGAGCACAGGGTAATTATGCTGCTGATCTGTATTGCCACCCGCAATTGGACACAGATGTTGGAGCTGTGAAGGATATCTACTCTGACAGTGCTGTTGGTGTAAGGGAGTATGAGGCTATTGATGATGTGGACATCGACTTGCACATAAACATCAGCTTTTTAGATGAGGAGGTGGCCTCGGCATGGAAAGTCAACAGAACAGAACCTATAGTTCTACGCCTTCGATTTTCTTTGTCTCAGTACCTGGATGGACCAGAGCCGACAGTGGAAGTGTTCCAGCCTTCCTGTAAAGATAGCTTCAGTGTTGGTGTACAGCTCAAGAGAATTCTTAGCACATTCATATCTAATCAGTGGAAACACCTCAGCAATGAATTTTTGAGAGCACAGCAGAAGAAGAGACATAGCTGGTTCAAAGCTGGAGGAACGATCAAGAAATTCCGGGCTGGCCTCAGCATCTTCACACCAATAGCCAAgTGTCCCAATGTACCTCTGATCCAGGGCCCTGGAGAGAAGGGGAGGACATCAGGACCTGAGCCGAGAGGGAGCCGCCTTATGAGCCGCTCAGTTTCCTGTACCATGAAAATGCCAAAAGGAGATGTACTCACGTACGCGCCCAATGGACAGAATGCGACGGCCCctggctccagatccacagtTCAGATCACCACCAAGCAGCTTATAGAGCTGTTTTTCTCTTCACAAGCTCTCCTACACTGCAAGAGTATTCCTACACTAGAATACGGCTTTCTTGTGCAgATTATGAAGTACTCAGAACAGAGAATTCCCACCTTGAATGAGTACTGTGTGGTCTGTGATGAGCAGCATGTCTTTCAGAATGGCTCCATGCTCAAGCCAGCAGTCTGTACAAGAGAGCTATGTGTGTTCTCCTTCTACACACTGGGAGTTATGTCAGGAGCTGTTGAAGATGTGGCAACAGGGGCAGAGGTCGTTGACTTGCTGGTAGCAATGTGCAGAGCTGCCCTGGAGTCATCTCGTAAAAGCATTATATTTGATCCCTATCCATCGGTGGTTGATCCTTTCGATCCCAAGGCTCTGGCCTTTAACCCTAAGAAACGAAGCTATGATAGGTTGCAAAAAGCACTGGACAGCATCATGTCGATACGAGAAATAACACAAGGCTCATATGTAGAGATAAAGAAACAGATGGACAAATTGGATCCACTTGCACATCCTCTGTTACAGTGGATTATATCCAGCAATCGATCTCATATTGTCAAGCTGCCGTTAAGCAGGCAGCTCAAGTTCATGCACACTACCCACCAGTTTTTGTTGCTCAGTAGCCCTCCAGCTAAAGAGGCTCGATTCCGCACAGCTAGGAAACTATATGGCAGCACTTTTGCCTTTCATGGTTCCCATATAGAAAACTGGCACTCTATTCTACGAAATGGACTTGTTAACGCCTCCTACACAAAGCTGCAGACTGTAAGTTTGTTCAAATACATCCATGTTTTCTCCAACACAAGCTGCATGGAGCAGCCTATGGGAAGGGCATCTACCTCAGTCCCATCTCAAGCATCTCTTTTGGATACTCAGgGATGGGTAAAGGACAGCACCACATGCCCACAAAGGAGGAGCTTGTACATCATTATAACAGAGTCAACACCATctcacagAGTCTCCCAGTGCAGTCGAGGTTTCTTCAGAGTCGGAATCTCAACTGTGTCGCTCTTTGTGAGGTAATAACATCCAAAGACCTCCAGAAACATGGGAATATTTGGGTGTGCCCTGTGCCCGACCATGTCTGCACACGCTTCTTCTTTGTGTATGAGGATGGACAGGTAGGAGATGCCAACATTAACACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178713 lncRNA downstream 16285 18338502 ~ 18338714 (-) True G150891
TU178697 lncRNA downstream 48556 18306209 ~ 18306443 (-) True G150875
TU178677 lncRNA downstream 49720 18304909 ~ 18305279 (-) False etfbkmt
TU178674 lncRNA downstream 52040 18301293 ~ 18302959 (-) True G150854
TU178654 lncRNA downstream 99581 18255075 ~ 18255418 (-) True G150834
TU178761 lncRNA upstream 9077 18373113 ~ 18376841 (-) True G150925
TU178837 lncRNA upstream 57457 18421493 ~ 18422644 (-) True G150988
TU178838 lncRNA upstream 58621 18422657 ~ 18423325 (-) True G150989
TU178848 lncRNA upstream 80855 18444891 ~ 18445188 (-) True G150996
TU178865 lncRNA upstream 143740 18507776 ~ 18507976 (-) True G151009
XM_026919897.2 mRNA downstream 7352 18340453 ~ 18347647 (-) True LOC113530128
XM_026919598.2 mRNA downstream 16576 18318624 ~ 18338423 (-) True arid3b
XM_026919599.2 mRNA downstream 17508 18318624 ~ 18337491 (-) False arid3b
XM_026920049.2 mRNA downstream 49670 18303142 ~ 18305329 (-) True etfbkmt
XM_034307371.1 mRNA downstream 49763 18303142 ~ 18305236 (-) False etfbkmt
XM_026919542.2 mRNA upstream 14693 18378729 ~ 18398258 (-) True hcn4l
XM_026918682.2 mRNA upstream 40476 18404512 ~ 18420371 (-) True nptna
XM_026918683.2 mRNA upstream 40476 18404512 ~ 18420369 (-) False nptna
XM_026919483.2 mRNA upstream 84106 18448142 ~ 18457983 (-) True ube2q2
XM_026919484.2 mRNA upstream 84106 18448142 ~ 18457980 (-) False ube2q2
XR_003403119.2 other downstream 50198 18304638 ~ 18304801 (-) True LOC113530223
XR_003403059.2 other downstream 140512 18206153 ~ 18214487 (-) False fnbp4
XR_003403060.1 other downstream 594960 17754384 ~ 17760039 (-) True LOC113529452
TU177725 other downstream 1296093 17053366 ~ 17058906 (-) True LOC113529460
XR_003403120.2 other downstream 1601718 16753176 ~ 16753281 (-) True LOC113530224
TU178843 other upstream 61283 18425319 ~ 18428973 (-) True G150991
trnat-agu_10 other upstream 778207 19142243 ~ 19142316 (-) True trnat-agu_10
TU179498 other upstream 1015620 19379656 ~ 19392896 (-) True zgc:114188
XR_003403122.1 other upstream 1023205 19387241 ~ 19387366 (-) True LOC113530226
XR_003403123.2 other upstream 1023733 19387769 ~ 19387895 (-) True LOC113530227

Expression Profile