RNA id: XM_026947321.2


Basic Information

Item Value
RNA id XM_026947321.2
length 2729
RNA type mRNA
GC content 0.54
exon number 18
gene id map7d1b
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 4537496 ~ 4593588 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATCACAGATTCCTCTCTTATCACTGACCCTCCCTCCAAAACAGAAACGCCCATCAAAGCCAGCAGCAGACCCAGCACGCCTGCAAACAGCGCCACCCCCCAGAACAAAAAAaGATGGGATGAGCTCGGAGCAGAAACAGAAGCTGGCaaaacagaggagagaggagagggccAAGTACATGGAACAGAGAACCCATGAGCAAGCGATGAAGAAAGCTCAGTGgctggagaaggaggagaaggctCGGCGTCTGAGAGAGAGCCAgctggaggagaggaggaggaggctggAGGAGCAGAGACTCCGGGCTGAGAAACGCAGAGCGCTCCTCgaggagaaacagagacagaaactgGAGAAGAACAAGGAGAGATACGAGTCTGCTATCAAACGGTCAACTAAGAAGACGTGGGCTGAGATCAGACAGCAGAGATGGTCCTGGGCTGGAGGACTAAACCAGACGTCTCGCAGAGAGAGCAGATGCTCGTCCTCTACCGTAAACCTGCCGCGGCAGACAGAGCCTGTCATTAGCAACAGGCTGTCCAAGTCGTCGGCGACGCTGTGGAACTCGCCCAAACGAACTCGTAGCCTGCGCCTGAGCCCGTGGGAGAGTCGCATCGTGGAGAGACTCATGACCCCGACGCTGTCCTTCCTGGCCAGAAGCCGCAGTGCTGCCACGCTCCTGAACAGCAGCGACCCTCATCAGTGTTCCCGTTCTCCGTCTGTGTCTCCGTTAGCCGCCTGCTCCCACCAGCACAGCGCAGACCGCTGGAGTTCCAGCACCCCGGACATCACACAGCGCCAACGCAGACGCAACTCTGCaccgGctaagaaggagaagaaggacaaggagagagagaatgaaaaagaaaagaacgcCATCACTAAAGAGAAGGTGCAGAAGAAGAGACAGTCCGAGTCGATCACACGACccaaacctgagctcagcacCAACGTTAAACCTAAGAGTCGAGTTTCCTCACCCGCGCCCCCCAGGAGTCGTCCCCTGTCCCCCAGTCCTGCCGTGTCCCCCAAACCCCCATCCACCTCCTCCTCAGGCCGAACTCCTGCTGCCACTAAAACCCGACCCCGACGTGCACAGACCCCGGCCCGAGTGCAGCCCCCCGCCGTGAGCACCGTCACCGTGACCGAGACGAAGAAAGAACAGCCGGCTCAAACCGGACCTGCTAAAGACGCcaagagtgagtgtgagaTTCCTGCCATCACAGTCTCCGCCTCTCCTGCGAAACCGGCTCCTGCCACCCAGCCAATCACAGCAGCTCCTCAGACCCCAGAGCCCACACCCACTTCTCCACCTGACCCCACCCCTCCTGTTACCAAGCCGACAGCAGGTACTACAGACCCAGAGGAGGCGACCCGTGCGCTGGCGGAGAAACGACGGCAAGCtcgagagcagagagagagagaggagcaggagAGACTGGAACAGGAGCAGAGAAACAGaGCTCTACAGGAGGAGCGCGCTCAgcgtgaggaggaggagaggaggcgcagggaggaggagcagcagttAATGGCGGAGCAACAGCGTCtgcaggaggagaaggaggcGCAGGAGAGAGCTCGCGCCGAGCAGGAGGAGAACATGCGTCTCCAGAAACAGagaGAGGAGGCGGAGTCGAAGGCTCGAGAGGAGGCGGAGCGTCAGaggctggagagagagaagcactTTCAGAAAGAGGAGCAGGAACGTCTGGAGAGGAAGAAGcgtcTGGAGGAGATCATGAAGAGAACTCGTAAGAGCGACGCAGGAGACAAGAAGGAGGCCAAATCTCCAGCGCAGCTCAACGGCAAAGACACAAattctgtcACTGCTCTGAATCCGTCAGTCAATCACAACAACAGTACTCCAGGTTTAAACCAATCACAGGGAGAGGTGAAAGCGAGCCCCGTGTCCTGGAACTCTGCTCCTGTGGTAAACGGTGTCCCGGACACCAAACACCACAACGGCCTGTCCTCCAACGGAGAGCCTGCTGACTTCGAGGAGATCATTcagctgaccaatcacagcagcAGTAACAGCAATGGGCAGGGCCAATCGCAGAGCAGCATCACGACTGACCCAATCATGGCGTTTGAGGGAGGAGAGCCCTTCATTATGAAGGCGGGGCCGATGAAGCCTCAGCATGTGGCAgAAGTGCTGTGAGGAATCAGACGAGGCTTTACCGCCGTGTACGCGAGGCAGATGAgcggtgagagtgtgtgtgccaaACCGTCAGAGCGACTGCTTTaactgaaagactgaaagacagaaagacaaaaagatgtGGACCTTCATCTTATTTACGTAccctataagaaaaaaaaacagtgttttctgtctttctcactgcGTGTGAAAGTGCAGCAGTGTTCAGTTTAATCCTCAACGTCATCCAGAGTCTTCGTGTTGCACCTTAAAAGACTGTGTGACGGGATTTAGAGACAAAACGTGGAAAAGCATTACGATATTCGAGTATTGTTATGAgaaataattattgttattgtcatTGTTCTTACACTATATcagtattttttcctttaaattcagaaataaacagtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtttgtcttgaaCTCTTGAGTTATTTAACTTGAGAcacagcagacagagagagagaaagagagagaggtgaggattgattatgtaaatgtatatttgcCTGATCTGTGGaataaatctttattaaaaaGGGA

Function

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005874 microtubule cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169741 lncRNA upstream 933 4523998 ~ 4559387 (+) True G143317
TU169755 lncRNA upstream 1902 4557306 ~ 4558418 (+) True G143322
TU169754 lncRNA upstream 2605 4557306 ~ 4557715 (+) False G143322
TU169735 lncRNA upstream 16836 4491097 ~ 4543484 (+) True G143312
TU169739 lncRNA upstream 37627 4521874 ~ 4522693 (+) True G143315
TU169689 lncRNA downstream 21654 4615242 ~ 4622151 (+) True G143269
TU169884 lncRNA downstream 100796 4694384 ~ 4694861 (+) True G143440
TU169892 lncRNA downstream 109974 4703562 ~ 4703783 (+) True G143448
TU169894 lncRNA downstream 113319 4706907 ~ 4707152 (+) True G143450
TU169895 lncRNA downstream 119612 4713200 ~ 4714103 (+) True G143451
XM_026947325.2 mRNA upstream 29334 4525615 ~ 4530986 (+) False stpg1
XM_034307695.1 mRNA upstream 29334 4525969 ~ 4530986 (+) True stpg1
XM_026947326.2 mRNA upstream 51478 4484833 ~ 4508842 (+) True fhl3b
XM_034307648.1 mRNA upstream 80826 4468122 ~ 4479494 (+) True rragcb
XM_034307337.1 mRNA upstream 513672 4009919 ~ 4046648 (+) True LOC113523835
XM_026947358.2 mRNA downstream 12733 4606321 ~ 4631426 (+) True thrap3b
XM_026947390.2 mRNA downstream 77462 4671050 ~ 4690613 (+) True si:dkey-206d17.12
XM_034307199.1 mRNA downstream 309312 4902900 ~ 4905863 (+) True LOC117597937
XM_026947374.2 mRNA downstream 821329 5414917 ~ 5420160 (+) True LOC113547138
XM_034307132.1 mRNA downstream 971733 5565321 ~ 5582749 (+) False LOC113547141
TU169682 other upstream 55265 4484843 ~ 4505055 (+) False fhl3b
TU169683 other upstream 55265 4484883 ~ 4505055 (+) False fhl3b
TU168849 other upstream 1098149 3397670 ~ 3462171 (+) False G142576
TU168853 other upstream 1164253 3388253 ~ 3396067 (+) True LOC113523845
XR_003402471.1 other upstream 1191982 3368205 ~ 3368338 (+) True LOC113523858
TU170101 other downstream 1147370 5740958 ~ 5747944 (+) False gpx3
TU170815 other downstream 1993623 6587211 ~ 6593605 (+) True LOC113547098
TU170969 other downstream 2186401 6779989 ~ 6798904 (+) False G144353
LOC113547145 other downstream 2189928 6783516 ~ 6785437 (+) True LOC113547145
TU170957 other downstream 2203221 6796809 ~ 6870576 (+) True G144353

Expression Profile