RNA id: XM_026947347.2


Basic Information

Item Value
RNA id XM_026947347.2
length 1958
RNA type mRNA
GC content 0.44
exon number 7
gene id ppp2caa
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 5967742 ~ 5975213 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACGCTGCTCAGCTTCCTCTTCGCTTCCTGCGCGGGTGCAGGCGCTTCAGACTCGCAATCATCGGAgtctatttctgtctttctgtttcttttcagtGCTCATGTCAAAATCCTAAATTATTCTCGGATACATTAGGATAATTCTGCATGTATCTGTAGAACTGAGCTGCTTCGTTGTAATttttaaacgtttttttttaaaacggaAAGACCCGGATGACGCGAGACCCGGTTTAGCTCAATTGGCCACAAAAAAACATCCGCTTTCTCCCCCTAAAATCCTACATTAAcgatttattttttgattttatttgctcTCGGCTGGTGAGTATGGATGAGAAGGTGTTTACAAAAGAACTGGATCAATGGATCGAGCAGCTGAACGAGTGCAAACAGCTGTCGGAGAACCAGGTTAAATTTTTATGCGAGAAAGCTAAAGAGATTTTATCGAAGGAGTCCAATGTTCAGGAGGTACGTTGTCCGGTCACGGTGTGTGGAGATGTCCACGGGCAATTCCACGACCTCATGGAGCTTTTTAAGATTGGCGGGAAATCACCAGACACCAACTATCTCTTCATGGGCGACTATGTGGACCGAGGCTATTACTCTGTAGAGACTGTCACACTTCTAGTGTGTTTAAAGGTTCGATATAGAGAGCGAATCACCATCCTCAGAGGGAACCACGAAAGCAGACAGATCACACAGGTTTACGGCTTCTACGACGAGTGTCTGAGAAAATACGGCAATGCAAACGTTTGGAAATATTTCACCGACCTTTTTGACTACCTTCCCCTCACTGCCCTGGTGGACACACAGATTTTCTGTCTCCATGGAGGACTGTCTCCGTCCATCGATACGCTGGATCACATTCGAACTCTGGACCGCATCCAGGAAGTCCCACATGAGGGTCCCATGTGCGACCTGTTGTGGTCAGACCCCGATGACCGCGGTGGCTGGGGGATTTCACCCAGAGGAGCCGGCTACACGTTCGGCCAGGACATCTCAGAAACCTTCAATCACGCCAACTCCCTGACCCTGGTGTCCAGAGCTCACCAGTTAGTCATGGAGGGATACAACTGGTGTCACGAGCGGAACGTCGTCACGATCTTCAGTGCTCCGAATTACTGTTACCGCTGCGGCAATCAGGCGGCCATCATGGAGCTCGACGACACGCTCAAGTATTCATTTTTGCAGTTCGACCCGGCGCCTAGAAGAGGAGAACCGCACGTCACCCGCCGGACCCCCGACTACTTCCTGTAACGTCTCTGTGCCTGATGAAGTGTTCCTCAGCATTATCCTGATCGCAGACTGAACTGTCATCACaaaatcagctcctctcattTCTCCAAATATTATTGCATCTCTGAATACCTGAATTTGTCCATGGACCAAAATGTGTGCCATCAGCATAATGtaggggaaaagaaaagagaaacacacacacacacacacatacacaactttTAGCCATTTTACATCTACAGTGATTCAATAAAGCTTTGGTTTCCTTGATATGAGCGAACTTCATGCAGATTAAATATCCTACCAGTGTTCTTTTGAAATGTGACTTATTCTTTAGATCATGATGTAGGAGCTTTTGGCTGGACATTgtggtgaataaaaaaaaaaaaaaaaagccatgtgTAGTATCATGCAGATTCAGCCCAACCTCTCATCCGATTCATCTTAGACTTTCAGATGAaagttaatattttgtttaattatatgaagttgaaaatgcactttttttgtgGTACAATCTTTCAGTGTTATCGAATTGTAGATTATTTACAGGCAGATTTGTTTTGTAACTGCATTGTTCCCACCACCACCTTTGTAAAACCGAGCACTTTTTCGTTAATGGAAACTGCGAGCTGTATTTCTTTTCACTATAGCAGTAtgaaaatgtacacaatgtttTTAACGCCTCAGATCTGAGATAAAGCTGTTTTTCTGCC

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170268 lncRNA upstream 31413 5932581 ~ 5936329 (+) True G143772
TU170260 lncRNA upstream 43990 5922811 ~ 5923752 (+) True G143766
TU170248 lncRNA upstream 55001 5910983 ~ 5912741 (+) True G143757
TU170250 lncRNA upstream 55001 5911057 ~ 5912741 (+) False G143757
TU170118 lncRNA upstream 240155 5724880 ~ 5727587 (+) True G143644
TU170347 lncRNA downstream 2889 5978102 ~ 5984378 (+) True G143832
TU170524 lncRNA downstream 381104 6356317 ~ 6357920 (+) True G143987
XR_003404779.2 lncRNA downstream 446923 6422136 ~ 6428434 (+) True LOC113547099
TU170785 lncRNA downstream 569159 6544372 ~ 6544916 (+) True G144221
TU170834 lncRNA downstream 653138 6628351 ~ 6684107 (+) True G144256
XM_026947346.2 mRNA upstream 64279 5865457 ~ 5903463 (+) False n4bp3
XM_026947345.2 mRNA upstream 64279 5881846 ~ 5903463 (+) True n4bp3
XM_034307400.1 mRNA upstream 106535 5854230 ~ 5861207 (+) True LOC113547110
XM_026947344.2 mRNA upstream 117684 5838626 ~ 5850058 (+) True LOC113547120
XM_026947312.2 mRNA upstream 219802 5740907 ~ 5747940 (+) True gpx3
XM_034307233.1 mRNA downstream 23254 5998467 ~ 6037800 (+) True LOC113547108
XM_034307224.1 mRNA downstream 23254 5998467 ~ 6018704 (+) False LOC113547108
XM_034307226.1 mRNA downstream 23254 5998467 ~ 6018704 (+) False LOC113547108
XM_034307227.1 mRNA downstream 23458 5998671 ~ 6018704 (+) False LOC113547108
XM_034307225.1 mRNA downstream 24197 5999410 ~ 6018704 (+) False LOC113547108
TU170101 other upstream 219798 5740958 ~ 5747944 (+) False gpx3
TU169682 other upstream 1462687 4484843 ~ 4505055 (+) False fhl3b
TU169683 other upstream 1462687 4484883 ~ 4505055 (+) False fhl3b
TU168849 other upstream 2505571 3397670 ~ 3462171 (+) False G142576
TU168853 other upstream 2571675 3388253 ~ 3396067 (+) True LOC113523845
TU170815 other downstream 611998 6587211 ~ 6593605 (+) True LOC113547098
TU170969 other downstream 804776 6779989 ~ 6798904 (+) False G144353
LOC113547145 other downstream 808303 6783516 ~ 6785437 (+) True LOC113547145
TU170957 other downstream 821596 6796809 ~ 6870576 (+) True G144353
LOC117598156 other downstream 821759 6796972 ~ 6798904 (+) True LOC117598156

Expression Profile