RNA id: XM_026947355.2


Basic Information

Item Value
RNA id XM_026947355.2
length 5893
RNA type mRNA
GC content 0.53
exon number 49
gene id LOC113547127
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 6605821 ~ 6679326 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTAACGGTGCGCTCGAGGCGTCGATAAGTCACGTCGCCCTTGAATACCGATCGCCTACGGGacctgagtgagtgtgtgtgtgtgtgtgtgtttctcttttcttccccCATCCTCGTCACGCGAGATTAAACGAGGTGAAGGAATGAATAGCTGGAGGGACAGACGGGTGAGCGAGCAGCGCGAGCGAGCTGCATGAGCGACGCGCGCGCTCcaacaccaccagcaccacccACACCTTCAACACTGCCCGCGAACTGAAGAGGAGGAGGGCGCGAGCTCCGGACAAGCAGCTGTGGAGCGCGTGCGGGTTCTGAGGAACAAAAAAAACGACAGttagtttttaaatttgtacatttaaaatctgTGGAAATCTGCTGAGACCGTTGAGTAACCGTCGTTTTTTAAAGGGCTCTTGCCCCACACTAGCTGAGAGGATGCAGGCGAGGGGCATCAGGTCACTAGGTCCACTTCTTCTCCTGGCACTATCATCACTGTTCACCAAACCAACACATGGACAAGtgcctGCTCCTAGAAGATTGCGTTTTAAGGAGCTAGGTTCAGGCATGCTCAGTGTGTCCTGGAAGGAACCGAAAGGAGAGTTTGACAGCTACAGATTCATCTACAGCTCCGGCTCAGgagaacaagagagagatgTGCAGGTGTCGAAGGAAGATGCCAAAGCTGTGATCACAGTATTTGATAACAGTAAAGAGTACAGCTTTAAAGTCTTCACCGTCAGTGGCAGTCAATTGAGTCAACCACTCCTGGGGACATATAAAGCTTCAAGGTCAGAGGTGAGTGACAGCAGCCCACTGACTCACAGTGCAAGGCAGAACAGCAAGCCTGAGCAGGGAAACGAGATCATCGAAGAGATTTCATTCACGTGTAAAACTCCAGCGATAGCTGATATTGTGATTCTGGTGGATGGCTCTTGGAGTATAGGGCGCTTTAATTTCCGTCTGGTGCGTGCATTCCTCGAGAGTCTTGTGACAGCATTCTCCATCAGCTCGGACCAGACACGTATCGgaTTGGCTCAGTACAGTGGTGATCCAAGGATTGAGTGgcacctcaacacacactccacaaaaGAAGAGGTCATCAATGCTGTGAAGAATTTGCCATATAAGGGAGGAAACACACTAACAggtctAGCCCTAATGTACATTCTTGAGAACAGCTTTAAACCTGAGTCTGGATCCAGGGCAGATGTTCCAAAAATCGGAATCTTGATCACGGATGGGAAATCTCAGGATGATGTCATCGGCCCCGCCCAAAGTCTCAGGGATGCGGGAATAGAGTTGTTTGCCATTGgtgtgaagAATGCTGATGAAAATGAGCTGAGGATGATTGCGTCTCCCCCAGAAGAGACCCATGTATATAACGTGGCTGACTTTAATGTAATGAACTCAATAGTGGAGGGTTTGACCAGGATCGTGTGTCAGCGTGTGGAGCATCTCAACAGGGAGATCAAAGgtGAATCCGTCTCCTATACAATTCCTGATGCACCCAGTGACCTTGTGACCTCTGAGGTCACAGCTAGGAGTTTCCGTGTCTCCTGGACCCATGCTCCTGGAACAGTGGAGAAATATAGAGTGGTGTACTGCCTCCAGGGAGGCAAAccagaggagGTGGTGGTGAACGGTGATCAGAACTCAGTGGTCCTCCAGCATCTGAACTCTGTGACTGAGTACCAAGTGGCTGTGTTCGCTgtctacagtaactctgccAGTGAAGGTCTGAGAGGCAGCGAAACCACATtGGCTTTGCCCATGGTGAATAACCTGGATCtgtatgacatcacacacaatagCATGCGGGTGCAATGGGTTGCTGCAGAAGGGGCTTCTGGATACATGATCCTATACGCCCCACTGAGTGAGGCAGGCTCATCGGATGAGAAGGAGgttaaaGTAGCAGACAGTGTAACTGAGATCGAGCTGGATGGTCTGACTCCTGCAACTGAGTACACAGTCACAGTCTACGCCATGTATGGAGATGAAGCCAGCGACCCCCAGACAGGCCAGGAGACCACActtccTCTCAGTCCCGCACGAGATCTGCGTATCACTGATGTGACTCACAGTTCTGCTAAGCTCAGCTGGGAGGCTGCGTCTCGTAAAGTGAAAGGCTACCGCATCATGTATGTGAAGACGGACGGAGTTCAGACCAATGAGGTTGAAGTGGGTCGAGTTACCACGAAGTTGCTAAGTGACCTCACCTCCTTGACAGAGTACACCGTGGCCATCTATGCCATCTACGATGAGGGACAAGCCGATTCCCTCACAGACAGCTTCAGAACTAaaCGGGTTCCTGTCCCAGTGAGCGTAAGGAGCAGTGAAGTGACCACAGACAGTTTCAGAGTGAGCTGGCAGCATGCAGCATCTGACATTTCTCTTTACAGGCTCTCCTGGATGCCAGCCAATGGAGGAGAGACCAGAGAGaTGGTGATTGGTAGTAATCTGAATTCTTATGTGATTACGGGTCTGAGGCCGCTAACTGAGTATGAGGTCACTCTCACGGCCATCTCCAAAGACAAAGCTGAGAGTGAGAAAGTCATGCTCAGTGAAACTACAGTTGCTAGAACAACAACAGTGGCAACTACGACTACCACCACAACTACTGCAGTGGTTAGGATGGGTGTGCGAGGTCTACAGCTGAGCGATTTTACTACATTCAGCATGGTCGCATTGTGGGAACTGCTGGGCTCAAATGTGCGTCAGTATAGAGTGTCCTACATTTCAACACGTGGAGACAGAGCTGAACAAGTGATGATGGTTCCTGGCAATCAGAACTCGGTGGTGCTGCAGCCGTTGCTGTCAGATACAGAATACAGAGTGAGCGTGACAGCCATCTATGCAGACGGAGACGGACCAGCCAGTACACGCTCCGCTCGCACATTGCCTCTCATTGCTCCTAAGAACCTGAAAGTGTCAGAGGAATGGTACAATCGCTTCCGCATCACCTGGGACACACCCCCCTCTCCCACCATGGGATACAGGGTCATCTACCAGCCTGTCTCAGtaccAGGCCGGGCTCTAGAGACATTCGTTGGTGACGATGTAAACACCATGCTGATCTTAAACCTGATGAGTGGGACAGAGTACAGTGTAAAGGTCATTGCCACGTACACCACTGGCTCCAGCGACGCTCTCACTGGCAGAGCCAAAACATtATACCTGGGTGTAACTAATCTGAGCACCTATCAGGTACGAGTGAACAGTATGTGTGCTCAGTGGCAGCCTCATTCTCATGCCACCCAGTACCGTGTGTCCATCGAGTCTCTGCTCAATGGCCAGAAGCAGGAAGTGAGGTTGGATGGCTCTGAAGCCAGGCATTGCTTTAGCGACCTGAATCCAAACACACAGTATAAAATCAGTGTTTATGCTCTGCTACAGGAGGCAGAGGGCCCTGCTGTCAACACCATCCAGAAGACACTCCCGGTGCCCACCAGTCCTCCCACCAAGCCTCCAACCACCACGCCACTCCCCACCATCCCTGTTGCTAAGGaagTTTGCAAAGCCGCGAAGGCAGATCTGGTGTTTTTGGTTGACGGCTCATGGAGCATTGGTGATGACAACTTCCTAAAGATCATCCGATTCCTGTACAGCACAGCCGGAGCGCTGGATGAAATTGGACCTGGAGGCACACAGGTGGCCATAGCCCAGTTCAGCGATGATGCTCGCACCGAGTTTAAGCTCAACTCATATGATAACAAGGAGAGTCTTCTGGAGGCCATTCAGAGGATTTCATATAAAGGAGGCAACACTAAAACAGGAAGAGCTATGCAGCATGTGAAGGATGCAGTCTTCACCAGGGCTGGAGGAACCAGGAGGGGCGTGCCCAAAGTGCTAGTAGTGTTGACAGACGGCCGTTCCCAAGACGACGTCAATAAAATCTCCCAGGAGATACAGATGGAAGGTTACATCGTGTTTGCGATCGGTTTTGCCGATGCCGACTACGGAGAGCTGGTGAGCATCGCCAGCAAACCCAGCGAGAGGCATGTGTTCTTCGTGGATGACCTTGACGCTTTCCGAAAAATTGAAGAGAAACTCATTACGTTTGTCTGTGAGGCTGCATCGGCAACTTGTCCTTCTGTAGCAATGAGTGGCAGCACATTACCAGgtttTAGAATGATGGAAATGTTTGGGCTGGTGGAGCATCTGTACAGCAATGTGGCGGGTGTTTCCATGGAGCCAGGAACCTTTAACAGCTTTAGTAGCTACAGACTTGCCAGTGATGCCCTGCTGGCACAACCCaccagGTTCATCCACCCTGAGGGTTTGCCCTCTGATTATACAATCATCATGGTGTTCCGCCTGCTGCCCCAAACCCCCCAGGAACCCTTTGCATTATGGGAAATTCTCAACAGTCGAAACGAACCCTTAGTGGGCGTCATCCTAGACAATGCAGGGAAGACGCTGACATTCTTCAATAATGACTATAGGGGTGATTTTCAGACTGTAACATTTGAGGGTCCTGAGATTAAGAAACTCTTCTATGGCAGTTTCCACAAGTTGCATATAGCAGTGAGTAAGACACTGGCGCAGGTGATGGTGGACTGTAAACTTGCTGGCGAGAAGCCCATTAATGCTGCTGGCAACATCACCACTGACGGCATGGAGGTTTTGGGCAGAATGGTCCGATCCCGAGGAGACAGGGACAACTCTGCAccgtttcagCTCCAGTCATTTGATATTGTGTGTAGTACATCATGGGCTCGTCGAGACAAGTGCTGCGATCTTCCTAGTCTGAGGAAGGAGGCAGATTGTCCGGCACTGCCTCGAGCCTGTACATGCACTCAGGACAGTAAAGGCCCTCCTGGTCCACCCGGACCACCGGGAGGTCCTGGTATTAGAGGGGCAAGAGGAGATCGAGGAGAGCCCGGCCCTGTGGGGCCAGTGGGCCCAGTTGGAGAATCAGGAGTACCAGGACCTCAGGGCCCTCCCGGCCCCCAGGGGCACAGTGGGCGATCCATCAGAGGCCCTccgggtggtccaggtgagagaggagaaaaaggtGAAGCAGGACCTCGAGGTACTCAGGGCGTTCCAGGAAACCCAGGATCCCCAGGGCGGGACGGCCCTCCTGGACCCAGAGGTTTGCCGGGTAACGACGGACCACAGGGCAGAGCGGGGCCTCCCGGAACTATTGGAGGACCAGGAGCTCCTGGGGCACCGGGTCAGAATGGCCCTCCAGGACCCACCGGCGATCAGGGACCCCCAGGCCTTCCAGGTTCGAAAGGAGAGAAGGGAGAACGAGGGGATGCACAGTCCACTTCATCAGTCCAAGCCATTGCTAGACAAGTGTGTGAGCAGCTCATACAAACTCACATGGCTCGTTATAACTCCATCCTGAATCATATCCCGAGGCAGCAGGCAGTTTCAGTCCGCACTGTTCCTGGGCCTCCAGGTGAGCCTGGTCGGCCCGGTCCTCCAGGACAGCAAGGAGAGCAGGGTCCGCCTGGACGTCCCGGATTTCCAGGAAATAATGGAGAGAACGGAGAGCCTGGTGCCAGAGGTCTTCCAggtgagaaaggagagaaggGAGCCCCAGGTGTTGGTGTCCAGGGTCCCAGAGGGCCTTCAGGACCTCcaggACCACCTGGTGAAGGAAGGAGTGGCAGCCCTGGCCCATCTGGTCGCCCTGGTAACCCTGGTGGTGCCGGCAGACCCGGCATTCCCGGACCAGTAGGACCGGCCGGACCCCCAGGATACTGCGATCCGAACTCCTGCGGATACAATGTGGCAGttGTTGAAGACCAGCAACAGTTTGTACATGTGTACTGAGCTTCAAGCTCCATTCACACGTTTGTGTAGGCTGTTGATGGCGCACATACCTGGAGTCTTCTcttaacacgcacacacacacacacacacgcatacacacacgcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170785 lncRNA upstream 60905 6544372 ~ 6544916 (+) True G144221
XR_003404779.2 lncRNA upstream 177387 6422136 ~ 6428434 (+) True LOC113547099
TU170524 lncRNA upstream 247901 6356317 ~ 6357920 (+) True G143987
TU170347 lncRNA upstream 621443 5978102 ~ 5984378 (+) True G143832
TU170268 lncRNA upstream 669492 5932581 ~ 5936329 (+) True G143772
TU170960 lncRNA downstream 104012 6783338 ~ 6830066 (+) False G144353
TU170964 lncRNA downstream 104012 6783338 ~ 6915019 (+) False G144353
TU170970 lncRNA downstream 104012 6783338 ~ 6877401 (+) False G144353
TU170981 lncRNA downstream 128645 6807971 ~ 6826908 (+) True G144359
XR_004578858.1 lncRNA downstream 133968 6813294 ~ 6814838 (+) True LOC117598166
XM_026947313.2 mRNA upstream 12261 6587367 ~ 6593560 (+) False LOC113547098
XM_026947395.2 mRNA upstream 190435 6404746 ~ 6415386 (+) True proza
XM_026947309.2 mRNA upstream 303256 6297766 ~ 6302565 (+) True ndufb9
XM_034307383.1 mRNA upstream 358116 6120616 ~ 6247705 (+) True syngap1a
XM_026947307.2 mRNA upstream 488284 6108863 ~ 6117537 (+) False scn1bb
XM_034307439.1 mRNA downstream 158 6679484 ~ 6680169 (+) True LOC117598051
XM_026947362.2 mRNA downstream 13467 6692793 ~ 6733914 (+) False LOC113547131
XM_026947363.2 mRNA downstream 18986 6698312 ~ 6733914 (+) True LOC113547131
XM_034307653.1 mRNA downstream 573994 7253320 ~ 7264696 (+) False LOC113529730
XM_034307652.1 mRNA downstream 573995 7253321 ~ 7264696 (+) True LOC113529730
TU170815 other upstream 12216 6587211 ~ 6593605 (+) True LOC113547098
TU170101 other upstream 857877 5740958 ~ 5747944 (+) False gpx3
TU169682 other upstream 2100766 4484843 ~ 4505055 (+) False fhl3b
TU169683 other upstream 2100766 4484883 ~ 4505055 (+) False fhl3b
TU168849 other upstream 3143650 3397670 ~ 3462171 (+) False G142576
TU170969 other downstream 100663 6779989 ~ 6798904 (+) False G144353
LOC113547145 other downstream 104190 6783516 ~ 6785437 (+) True LOC113547145
TU170957 other downstream 117483 6796809 ~ 6870576 (+) True G144353
LOC117598156 other downstream 117646 6796972 ~ 6798904 (+) True LOC117598156
TU170950 other downstream 130863 6810189 ~ 6870576 (+) False G144353

Expression Profile