RNA id: XM_026947374.2


Basic Information

Item Value
RNA id XM_026947374.2
length 4619
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC113547138
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 5414917 ~ 5420160 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gggagagagagagaaacagcagtGATGATCGATGCCAGTCTGCCACCACTCTGTAGCAGTGAGAGGCTGCAACAAAAGCGCGGAATAAAGGCTCCGCTGCTCTCGTCTCCGGTTGCCCTGcatctctccgtctctccgTACACAACGCAGCCCAGACACAATGTGCTGGCTCTGCCTGCCATCAACAAGTTACAACTAAAGGACCCTCAGCCACAAAAAAAGGAGTATTTGCTCTTCAATTAAGCAACTGAGCTGACGACATTGCGGTGGAAAGGgaaaggggaggaaaaaaagagggggGGGGCGACACACTGTTCGCGAGGGTCGCTTTGGATACAAATCAATTTGAAAAAGATTAAGGATTCCTGGAAGCAACAAGAATGCTGGACCTTTCTTAATTTGGgaactggatttttaaaaaacctaCAAGGGaattaagaacaaaaaaaaataaatggacaaaattcTGCAACATGGATCTTGTGAATTTGTTTCAGATGAGCGGGCTTGGCATTGCTTTAGTTGAGAAGACCTTCATTCGATTCGTATTTACTCAAAAGGCTTTTTTCCCTGTGGATTTCCCATCCATCTGGCTGTTCCAGGGCTCTACGGAGAAAGACAGTTGAATGCCACCGTCGATGTTCACAAAAGAATGGGTTTCCATTCAAGGTGGCCATTGGTGGGACAAGCACCAGCGGCACTTTGTGTGATCAGCATGCTACTGTGCCTGCCTCTCACATCATGCACAGCCTGCCCACAGAAATGCCGCTGCGAGGACCTGCAGTTTTACTGCGACACACAGGGACTCCTGGCGCCCCCAGACGGCGTGGACAGAGGAGCCTTGGGACTCTCGCTCCGGCACAACAGCATCAACGAGCTTAACCCTGATCAGTTCTTCGGCTTCACCCAGCTAACCTGGCTCCATTTGGACCATAACCAAATACTCAACGTGCATGAGGATGCCTTCCAGGGGCTTTACAAGCTCAAGGACCTGAATCTGAGCTCCAACCGCATCACCAAGCTGCCCAACACAACCTTCATCCACCTCATCAACCTCCAAATCCTGGATCTATCCTTCAACCAGATGACTGCACTGGAGCCTGAGCTCTTTCACGGGCTTCGGAAGCTCCAGATCCTCCACCTGCGGTCCAACTTCCTGCGGACCACACCTGTCAGGGCCTTCTGGGACTGTCGGAGCCTGGAGTACCTTGGCTTAAGCAACAACCGGCTTCGAAGCCTGGCGCGGAATGGATTCGCTGGGCTAATAAAGCTACGGGAGCTCCATTTGGAACACAACCACTTGACCAAGATCAATCTGGCCCACTTCCCACGTCTTGTCGCACTCCAGTTCCTCTATCTGCAGTGGAACAAGATTAACAATTTAACATGTACCATGGAGTGGGAGTGGACCACTCTGGAAAAACTGGATCTAACTGGGAATGAGATACGCACGCTAACCCCTGAAGTGTTTGAAACTTTACCGAACCTTAAGGTTCTGCTGCTGGATAACAACAAGTTGACCAGCCTTGATACCCAAACCACGGATATGTGGAAGTCTCTGAACGCCATCGGGTTGTCCAACAACCTTTGGGAATGTACAAAAAAGATCTGCAATTTGGCCAGTTGGCTTAGTAAGTTTAAGGGTCGATGGGAACACTCCATCCTATGCCACAGCCCTGAGTACACACAGGGTGAGGAAATACTAGATGCTGTTCATGGATTCCAACTCTGTCAAAACATCTCAGCACCTGTTGTACTGACCAGCACCACGATGGAGGCCACGTTACCCCAACAGTTCACTAGCTCCTTTTTTGGGAATATGCAGACACCAACACAGGACTTCTACCCTGAGGATTTTGGGAGCTTTACCATTGtcaccactactactaccaccactcaAACCCCTCAAACCACCATGGCTACCACCATGGTGGATGGGGAAGATGTTACCGAGGACTACGGCATGATGGACAACACCCTACTGACCCAGAGAGTCATTATAGGTACCATGgcccttttgttttctttctttctcatcgTTTTTGTAGTGTACATCTCACGAAAGTGCTGCCCTCCCACTCTGCGACGGATCCGCCACTGCTCGGCCATTCAGAACCGGCGACAGATGAGGACCCAGCAGAGGCAGCCAATGGCAGACCTGGCCACACAGGTGCCCTATAACGAGTATGAGCCGACACACGAAGAAGGTGCACTAGTGATCATTAACGGCTACGGGCAGTGCAAGTGTCAGCAACTGCCTTACAAAGAGTGTGAAgtataaacactttatttatttctgcagtTTATGGGTTTTGCCATTTCAACCATTTCGAAAGATACAGGGTTTGTTTTGGGAACTTTTTCAGCTtgtaaacaaaaggaaataatGAGCATTAATTCTTTATACTGGTTTTGGAAATCAATGAAAACTGGAAGGTCACAAGGACGAAATTGAAACAAGATGTATAAAGAAGctcaagtttatttttatagtatGAAAGCAAGGTTCATATCAAGCTGGGGCAATCAATCTCAGATGGTCGTTCATGAGATTTGTCAATGCGTTATTAGTCACTTATCCAGCAGCACAGAAAAGACAAGAGAGAAACATAAAGCCAAAATCATCTGGAACTTTGaggtccagaaaaaaaaactatgtatgAAACTGCATTCTTATTCTGTTAAATGTTTCAATTTTATAATGTGGTAAGAAGTGCTGTTGCATATgatgcacagaaacacaaatctgacaaaagagagagagagagagagaaaagagatttTTATGGTGCACGATAGACTACACTATAGATCTCACTTatcaccttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaggtaaaaATGAGTGGTTTATGGTTGGGTTCAAAGAGCATTTttactcatgttttttttttttttattattattatggaggAAGAGCACTGTAAAATTGTACCACGTCACATTTAGCTCATGAGTCTAACGAGGGAATTCAACAAATCAAACGGTTACTTCGTCAAAATAAATATGtcatgtttatttctgtttgatcTAGCCAAGATTTCATTTCATCTAACGAGAAAAGTTGATGACCTTctgttttagtttgtttttttttttccctcaacaaGTTACACCCCCATCTCCAAAATGTGAAAAGCTTAGCACTGTGTGTTAAAAGGCTAATGTCCAATGCGTTACCTTTGCTAACTGTCTGGCTCGCTCCGTCTACTGTGACGTCAGCAGggattaaataaatgttacacgTTTGCTCACCTTGCCATTATGTATATGCACATTCTTAacaagttaaaacaaaaaagattaaaaagggaaaaaaaaaaaaagaagatggcTCGGATATAAATACTCCAGCCTGTCAATGACATTCACTGTGACTGTTCACTGCTGCTTTACCCATTGCATACTGCGTAAATGACTGTAGAGATGATTCACAATACGGTAGAGGAAAATAAATCCTCCAGcaaatgaaaaggaaagaaggagaaaagatgCAAGAGAACTGGTAgggaaatacacaaaaataaccacaaaaaaaaaatctgacaaaaatatattcCCCCAGGCCTGGTAACAGcgttcctcaaaaaaaaaaaaaagagaaaaaaaaaaaagaaagcagagcCCGTAATCACATGTGACAGCTTGAAGATTGAACCAATTAAGGAcgaggaaaaaaataatctaatattcTGTCACCCACACCACTGCTCCAACAAGATTTAGACTGCTTGGGCATTCGGCTGAGGCACTTGCACATACCAGTGTCCTCCACTTTCACATAAAGGGTTTTCTTTTCTaggttttctctttttctattgtttttttttattgctttgatTGACAACTCCTGATGCTGGTTTTCAGAGAGGCAGGGGCGAGGAGGTTCTTTATCTGACAATCTTGAGGATATTACTGACAAGGTGTGGCAGGGAGGCAGTGATGAATGACAGAAGGAGAGAAGTGAAAAGTGTACGAAGCTCCTGAGAGAGAATCTGCAGTCTCTCCTCTGAACCAACacgagaagaaaaagaggagagaaggGTGGGGGGAAGAGGACGACACATTGGTATGCAGCAGGCAGAGGATGCGCATTAGCATCAGGGTGAAGAACCCGGTACAGCAACGCGGGGAAGATCAGATCTGTGTGTTCCACTGTGAGGCTGAGGACAGGAAACTTTAAAACATCCTAACGCCTGCAGTAGCCTCTTCACGGGAACAGGAGACGGCGTAGTGTTCAGGAGGTTATAAACTAGCTGAAACTAATCGCTATCCATCACGACAAACTGTGACTGAGGCTTTGGCAGCACGTTTACATATTCTTCTGAGGCACTGCGAGGCACAGGAGAGGTATTTTTGGCagcatttaaaatagaaaaggaaTCACAGGCATTGTGGAGTGAGGAGAGAGTAATTACGCACAACAGCAACGAAACACCCCGACTGGTGCTCACGCTCACACTGACTCCTACAGCCAGGAACACCTGGGGGGGTTAGAGAGAGATAGTGtgcgagagggagagagacagacagagggggagggagagagacagagagagagagagagagagagagcgagagagagag

Function

GO: NA

KEGG:

id description
K16665 LRRTM1_2; leucine-rich repeat transmembrane neuronal protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169989 lncRNA upstream 37800 5362261 ~ 5377117 (+) True G143532
TU169986 lncRNA upstream 39173 5358639 ~ 5375744 (+) True G143529
XR_004578816.1 lncRNA upstream 219968 5192067 ~ 5194949 (+) True LOC117598093
XR_004578817.1 lncRNA upstream 219968 5192067 ~ 5194949 (+) False LOC117598093
TU169966 lncRNA upstream 221630 5192061 ~ 5193287 (+) False LOC117598093
TU170016 lncRNA downstream 5257 5425417 ~ 5426525 (+) True G143559
TU170028 lncRNA downstream 32999 5453159 ~ 5454085 (+) True G143566
TU170031 lncRNA downstream 62458 5482618 ~ 5487228 (+) True G143569
TU170039 lncRNA downstream 71134 5491294 ~ 5491838 (+) True G143577
TU170069 lncRNA downstream 180203 5600363 ~ 5604660 (+) True G143601
XM_034307199.1 mRNA upstream 509054 4902900 ~ 4905863 (+) True LOC117597937
XM_026947390.2 mRNA upstream 724304 4671050 ~ 4690613 (+) True si:dkey-206d17.12
XM_026947358.2 mRNA upstream 783491 4606321 ~ 4631426 (+) True thrap3b
XM_026947318.2 mRNA upstream 821329 4537496 ~ 4593588 (+) False map7d1b
XM_034307132.1 mRNA downstream 145161 5565321 ~ 5582749 (+) False LOC113547141
XM_034307131.1 mRNA downstream 145256 5565416 ~ 5582749 (+) True LOC113547141
XM_026947312.2 mRNA downstream 320747 5740907 ~ 5747940 (+) True gpx3
XM_026947344.2 mRNA downstream 418466 5838626 ~ 5850058 (+) True LOC113547120
XM_034307400.1 mRNA downstream 434070 5854230 ~ 5861207 (+) True LOC113547110
TU169682 other upstream 909862 4484843 ~ 4505055 (+) False fhl3b
TU169683 other upstream 909862 4484883 ~ 4505055 (+) False fhl3b
TU168849 other upstream 1952746 3397670 ~ 3462171 (+) False G142576
TU168853 other upstream 2018850 3388253 ~ 3396067 (+) True LOC113523845
XR_003402471.1 other upstream 2046579 3368205 ~ 3368338 (+) True LOC113523858
TU170101 other downstream 320798 5740958 ~ 5747944 (+) False gpx3
TU170815 other downstream 1167051 6587211 ~ 6593605 (+) True LOC113547098
TU170969 other downstream 1359829 6779989 ~ 6798904 (+) False G144353
LOC113547145 other downstream 1363356 6783516 ~ 6785437 (+) True LOC113547145
TU170957 other downstream 1376649 6796809 ~ 6870576 (+) True G144353

Expression Profile