RNA id: XM_034307222.1


Basic Information

Item Value
RNA id XM_034307222.1
length 3031
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC113547147
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 6039728 ~ 6075245 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

attataattaccCACTACCCTTCAGCCCACAGTGGCTGTTGTATATGAATGCTTCTACCAATGTTTACTCTGACATATATAGGAAGTTCCTCACCCCTTAGACCATGCAGTGATGTACTCAACCCAATTTGAGTAAATTCTAACTAACACCAGTAGAACCGGATGATGGTCTCAAGCTATCACTTTTCCAGCTTGGAGTAGGTAATTTGAAGCAGACTCAAACTGACTCATGCTTAGATAGTGGCATAATTATGTTCCTGAGACAGGAGGAGATGGGAGACATGCTGAAACAGGGGCTCTGCTGTCTGGTGAACAGTGGGGAGACCTGAGAGTGGGATCAGACAACATTCTTTAGAGAACTACTAGTATGGTGATGCTTCTGTCAGACTGTGGGAGTTTAGTGACTAAATCCACTGAGAGAAAAGAATGATGCCCTGCTGCAAGTCTTCTCCTGCTCCCAGTGTCCAATTTCCTACACATCTCAAATTTATCTTGACAATCACATAAGGAGAAATCACCATGAAAAACATATGGTGTTGTTATtgagagaaagtaaaaatgatAATGTGATGCACACTGAAAGCTCCAGTACACAGCAAACACCCATTGGTATGCTCCACACTAGCACCATTCATGGACGAATGCAAAATGAAGAATATCACTGCTCAGATTGTGGGAAGGTTTTTGCTTACCAGAGTCATCTCCAccaacaccagcgcattcacacaggtgAGAAGCCATATCAGTGCTCAAAGTGTGGAAAAAGATTTAATCAGAAAAGTACTCTCCAGCGACACCAAGACATACACACGGGAGAGAAACCATATTattgctcacagtgtgggaggAGTTATACACGCCAGAGTACTCTCCAAtcacaccagcgcattcacacaggacaAAAACCATATCAATGCTCAATGTGCGGGAAAAGTTTCAGACAACAGAGTCATCTCCGACAGCACCAGCGCGTTCACACAGGCGAGaaaccgtatcactgctcactatgtggaaagagttttacttGCCAGAGTCATCTCCAAATACATCAGCGCATTCATACAGGAGAGAAGAGGTACTACTGCCTACAGTGTGGGAAAAATTTTATTTGCCAGAGTCATCTCAGAAcgcaccagcgcattcacactggagagaagccatatcattgctcacagtgtgggaagaaaTTTTCTGTGAAATATACCCTCAGACAACACCAGCATATTCATGCAGAAGAGAAGCCATATAGCTGCTtagagtgtgggaagagttttaataaagGGAGTGCTCTTGAACAgcatcagcgcattcacacaggagagaagccatatcactgctcacagtgtgagAAGAGTTTTGCTTGCCAGAGTCATCTCCaacaacaccagcgcattcatacaggagagaagccatatcactgctcacagtgtgggaagagtttcacTTGCCAGAGTCATCTTCaacaacaccagcgcattcacacaggggagaagccatatcactgctcacagtgtgggaagagttttacctGCCAGAGTCATCTCCaacaacaccagcgcattcacacaggggagaagccatatcactgctcacagtgtgggaagagttttacctGCCAGAGTCATCTCAGAACGCACTGGCGCATtcatacaggagagaagccgtatcattGTTTACAGTGTGGTAAAAGTTTTACTGACCAGAGTAGTTGTCAACAACACCAGCGTATTCATACAGaagagaagccgtatcagtgcTTACATTGtggaaaacattttacacaacaGCGTCATCTCAAGGAgcatcagcgcattcacacggGAGAGAAGCCATTTCACTGCTCTTATTGTGGAAagacttttaataaaacaagtGTTTTACAAAGACACCAGCGTATTCACACGGGGGAAAAGCCATATctctgctcacagtgtggaaaggGATTTAATCAACAGAGTCATCTTCAaagacaccagcgcattcacacaggagagaagccatacCAGTGTTCACAATGTGAGAAGAGCTTTAGTCAACAGAGCGATCTTCAAAAACATCAGCGCATTCATACAGgagagaaaacatttcattgttcacagtgtgggaagagttttgctTATAAGAGtaatctcaaaacacacaagcgcattcacacaggagaaaagccttatcactgctcacagtgtggaaagagatATAATTATTTAAGTACATTTAAGAAACACAAGTGCACCAAAATAGAGCATTCAGCTTGTGCTACATGATCTTCAAATTCAGAAACTAAAGTAGTCCGCTGTCAgttaaaacaaaactgattcaggaccttgctgttttttttattagtgttgTTAAATGCTTATAAGTGACAGCAAAGAGTGTGTTAAACCACACTTCATTTAACATCCCTACACaggttaaaaataataaatgggttTTTAGTCTACACTGTTAAAAACAGTGCCCAAGAGAAAAAGGCTTTGCTCAGtaagaaacaaaattataggGAACAGTGGTCCCATCCTGGGTGCATTCCAGCCTCATGCCTGGTGTCCTCGGAATAGGATCCTGATCCATCATGACCCTAACCAGCAAAAAGTTGTCACaagatgaatgattgaataTTTATTCTGTAGGAAGTTTTCCTATATTGACCTTGTGTATAAGCCTgctttttaatttactgtagCCTAATGTTGAATATACTTTTTTCACTAGCAGAGGGCATTGTTCATTTGGTTTTCAAACAGCATTCTGAAAACATTTGGTTTTAGCAGccataaaaagtattattaaacTTAACTGCAATTATAGTACTTTTATAGACCATCAACATAGTGGTAGAAATATGAGTCGCATTGAGGGTTACtaatccttttcattttttatgctTCAGAAATGAACCATGCCCTGCTGCAAGTCGTCTTCTGCTCCTGGTGTCAACTTTCCTACACATCTCAAATTTACCTTGACAATCACATAAGGAGAAGCCACTATGAGGAACATATGAGATTGCTGatatcaagagaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170347 lncRNA upstream 75378 5978102 ~ 5984378 (+) True G143832
TU170268 lncRNA upstream 123427 5932581 ~ 5936329 (+) True G143772
TU170260 lncRNA upstream 136004 5922811 ~ 5923752 (+) True G143766
TU170248 lncRNA upstream 147015 5910983 ~ 5912741 (+) True G143757
TU170524 lncRNA downstream 292675 6356317 ~ 6357920 (+) True G143987
XR_003404779.2 lncRNA downstream 358494 6422136 ~ 6428434 (+) True LOC113547099
TU170785 lncRNA downstream 480730 6544372 ~ 6544916 (+) True G144221
TU170834 lncRNA downstream 564709 6628351 ~ 6684107 (+) True G144256
TU170960 lncRNA downstream 719696 6783338 ~ 6830066 (+) False G144353
XM_034307233.1 mRNA upstream 21956 5998467 ~ 6037800 (+) True LOC113547108
XM_034307234.1 mRNA upstream 25137 6025796 ~ 6034619 (+) True LOC113547149
XM_034307224.1 mRNA upstream 41052 5998467 ~ 6018704 (+) False LOC113547108
XM_034307226.1 mRNA upstream 41052 5998467 ~ 6018704 (+) False LOC113547108
XM_034307227.1 mRNA upstream 41052 5998671 ~ 6018704 (+) False LOC113547108
XM_026947370.2 mRNA downstream 14275 6077917 ~ 6086079 (+) True lingo4a
XM_026947371.2 mRNA downstream 14276 6077918 ~ 6086079 (+) False lingo4a
XM_026947306.2 mRNA downstream 45221 6108863 ~ 6117537 (+) True scn1bb
XM_026947307.2 mRNA downstream 45221 6108863 ~ 6117537 (+) False scn1bb
XM_026947308.2 mRNA downstream 45221 6108863 ~ 6117537 (+) False scn1bb
TU170101 other upstream 311812 5740958 ~ 5747944 (+) False gpx3
TU169682 other upstream 1554701 4484843 ~ 4505055 (+) False fhl3b
TU169683 other upstream 1554701 4484883 ~ 4505055 (+) False fhl3b
TU168849 other upstream 2597585 3397670 ~ 3462171 (+) False G142576
TU168853 other upstream 2663689 3388253 ~ 3396067 (+) True LOC113523845
TU170815 other downstream 523569 6587211 ~ 6593605 (+) True LOC113547098
TU170969 other downstream 716347 6779989 ~ 6798904 (+) False G144353
LOC113547145 other downstream 719874 6783516 ~ 6785437 (+) True LOC113547145
TU170957 other downstream 733167 6796809 ~ 6870576 (+) True G144353
LOC117598156 other downstream 733330 6796972 ~ 6798904 (+) True LOC117598156

Expression Profile