RNA id: XM_034307131.1


Basic Information

Item Value
RNA id XM_034307131.1
length 2717
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC113547141
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 5565321 ~ 5582749 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGGTTATTTCTTGGGTAGGTTTTTTTGGCAGCTCATTTCTTGGGTAGCTCATTTCTTGGGCAGGTTATTTCTTGGGTAGCTCATTTCTTGGGCAGGTTATTTCTTGGGTAGCTCATTTCTTGGATAGGTCATTTCTTGGGCAGAGGATGAACGACTCGGCGGCGTCGTGCGTCTCCGGCGAGCTCTCCAACAGCTCGCTCCCGTGCGCGAACCTCTCGGTGTCCGACTACAACGCGGCGGACGCGGCGTCCTTTACGCACGTCTTCCCCGCCGTGTACGGGATCCTGTGCTTGGTCGGAGTCCTCGCCAACGCGCTGGTGATCTACGCCGTGGCCACGTGCAAGAAGAAGATGGTGTCGGACGTGTACGTGCTGAACCTGGCCGTGGCAGACCTGCTCTTCTTGCTCGTCATGCCCTTCAACATCCACCAGCTGGTGTGGGAGCGTCAGTGGGTCTTCGGCGCGTTCATGTGCAAAGCCGTGGTGGTGGTGGATGTGAGCAACCAGTTCACCACTGTGGGCATCGTCACTGTGCTCTGCATCGACAGGTACATTGCCATCGTCCATCCCATGTCGGAGAACCGCACCATCCAGTggaccatcatcatcaacatgcTGGTGTGGCTTGGCAGTTTCCTGCTCACCATCCCTGTCATGATTTACGCCAAGGTAATCTCCAAGAAGCACTCTAGCGTGTGCATGATATACCTTGATGGTCCCCAGGACATGTACTGGTACACCCTGTACCAGTCTACGCTGGGTTTCCTCGTGcccctcatcatcatcagcacctTCTACTCGCTGACACTGTACCATGTATTCCAGTCGACGCGCCGCGTCAAGCGCAAGCAGTCTCCGTGGGCCAAGAGAGCCACCAAGATGGTTCTGATGGTTATTGCACTCTTCCTGCTGTGCTGGACACCATATCACGTGATCCAGGTGATCAACCTGGGTATCCAACAGCCCACATCGGCCTTTGTCTATGCCTACAACATCAGCATCTGCCTGAGCTACTCGCACAGCTGCATCAACCCGCTCATGCTGCTGATCTTTGCTCAGAACTACCGCGAGCGTCTGTGCCGTCACCGAGAAACACGCAGCAACATGTCCAAGACCACGGTGAAGACTGAGGGATGCTCCAGCATGAGTCCTGATACCGCCCACCGCCTGACCATCATCTAACTCCTGCTTACGCAAACATAAATCCTTATTTGGGTTGTCTATTTAGGGGAACCCTTAACAGCAGAAATCTATAATATAGGAGTTTTGCTGTCAGGAAGGGCGCTAAGAAGAACCCATTCATGAAGCTAAGAACGCTTCATtgtccaaagaacccttttttttttaccaagagTGTAGTATAAGTCGGTCTGCACCACATCAACAAACAGTGTGGAGAGATTGATCAAACTTAACACTGTTTGTCTTCAACTGTTTGTACCTTTCCACCCCTGTATGCTGTAATCTGTAGAAGGGTTCTCTTCTCAAGGGTTCTTTCTTACGTctcctctggtttgctcattatggatctaaatctacagctggatttctgtaaagctgctttgtggcaatgtggCAAtcattaaaagtgctatacaaatgaCTCTCTGCCTTAATTCAGCGTATTTGCTTCATGTAGCTACACTGCACCAACGTCTCTCCACAACTTCTGCACTGGATTTCTCTGGAAAAGGgcgagtgagaaaagaagctctcgCTCGTTTGTGTTTTAGGAGATAACAGAGAAATCTGACAGTTATTGAGATTGTTGAAATTTTTCTCATCGTAACTGCACAAGCAACATCCCCCTGTGACATCTATACCGCAGGCAACTGCTAACGTCTAACATGAATAACAACCAACacattagcaccagaatcactaaacacatcacaaatatttcagtataaacagatTTACTATATTTCGGGGTGGCGTTTTCTTTCAATTCAGCTCTGAGCAAAGTATAGCTGCAGCTATTTCTACAATATGTTGTTAATATGCAGTTtgtggtctgttttttttacattatttgttcattcagtactgttttattttgtgcactCACTACAGGCTTGttgtaaatattgtctttgCACTTCATGGCTACAGGGAAGAAAATGGGCTAAATGATTTGTAACCACTGTTACCAAATTCAGACAACTGTTTGATTTAGCATTTGAATACTATTAAGTGTGTGCGATACTTTCAAAAGCCTTGAACTCAGATGGTTGTTGGTATTTTAGagatgcagcattttttttttaatctttgatgCTACACTAAATGCAGAACTCTATGCATGTGAAGTGTGactgtatcatgttttttttctgtcattttctattcattttcctGTTCTCCCCAGAGGAACTGCAGAACATCTATTCCCAGGGTTAATGAGTTAAGCTTCAGTCATGTGTAACCGGTGATATTTCAACACCCTGACTCGGCACGTTGTAACGCACATAAACAAATGAGTGTATTGGAGCTCAGTTGGAACTGAATGATTAGTGGATGTGATCAGAAAGCGAGTGGATGTGAAAGGTTCACCTGCTCATGGAGATAAACGGATTAGAGATGCTCCAGCATCAAATAGCCTAACAAACTGAATGTTGATGCTGTACGTTCCAGCTATAAATCTGACTAGCACATGGTAGAATGATCGCTTTTTTATCATATGGACAGAATATGATATTGAGCATTTCATGAGATTT

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04320 MCHR1; melanin-concentrating hormone receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170039 lncRNA upstream 73578 5491294 ~ 5491838 (+) True G143577
TU170031 lncRNA upstream 78188 5482618 ~ 5487228 (+) True G143569
TU170028 lncRNA upstream 111331 5453159 ~ 5454085 (+) True G143566
TU170016 lncRNA upstream 138891 5425417 ~ 5426525 (+) True G143559
TU169989 lncRNA upstream 188299 5362261 ~ 5377117 (+) True G143532
TU170069 lncRNA downstream 17614 5600363 ~ 5604660 (+) True G143601
XR_004578802.1 lncRNA downstream 27813 5610562 ~ 5613308 (+) True LOC117598079
TU170093 lncRNA downstream 66345 5649094 ~ 5652886 (+) True G143622
TU170118 lncRNA downstream 142131 5724880 ~ 5727587 (+) True G143644
TU170248 lncRNA downstream 328234 5910983 ~ 5912741 (+) True G143757
XM_026947374.2 mRNA upstream 145256 5414917 ~ 5420160 (+) True LOC113547138
XM_034307199.1 mRNA upstream 659553 4902900 ~ 4905863 (+) True LOC117597937
XM_026947390.2 mRNA upstream 874803 4671050 ~ 4690613 (+) True si:dkey-206d17.12
XM_026947358.2 mRNA upstream 933990 4606321 ~ 4631426 (+) True thrap3b
XM_026947322.2 mRNA upstream 971828 4560320 ~ 4593588 (+) False map7d1b
XM_026947312.2 mRNA downstream 158158 5740907 ~ 5747940 (+) True gpx3
XM_026947344.2 mRNA downstream 255877 5838626 ~ 5850058 (+) True LOC113547120
XM_034307400.1 mRNA downstream 271481 5854230 ~ 5861207 (+) True LOC113547110
XM_026947346.2 mRNA downstream 282708 5865457 ~ 5903463 (+) False n4bp3
XM_026947345.2 mRNA downstream 299097 5881846 ~ 5903463 (+) True n4bp3
TU169682 other upstream 1060361 4484843 ~ 4505055 (+) False fhl3b
TU169683 other upstream 1060361 4484883 ~ 4505055 (+) False fhl3b
TU168849 other upstream 2103245 3397670 ~ 3462171 (+) False G142576
TU168853 other upstream 2169349 3388253 ~ 3396067 (+) True LOC113523845
XR_003402471.1 other upstream 2197078 3368205 ~ 3368338 (+) True LOC113523858
TU170101 other downstream 158209 5740958 ~ 5747944 (+) False gpx3
TU170815 other downstream 1004462 6587211 ~ 6593605 (+) True LOC113547098
TU170969 other downstream 1197240 6779989 ~ 6798904 (+) False G144353
LOC113547145 other downstream 1200767 6783516 ~ 6785437 (+) True LOC113547145
TU170957 other downstream 1214060 6796809 ~ 6870576 (+) True G144353

Expression Profile