RNA id: XM_034307147.1


Basic Information

Item Value
RNA id XM_034307147.1
length 881
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC117597926
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2270050 ~ 2271586 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCTGTCTGCATATTTTGATTCTGGTACAAGTTTTATGACAGATGCCCTttctgacgcaaccctccccattttccaggcttgggaccggcagtgagagagaggaaagactCAGTATGGTTTCCGCACTGAATCAGCTGATGAGCCCGGAAAATGATCACGAGAATTGAGACCGAAAATTTATTCCGAAATTTAATTCCACAGATTGATGCGGAAACTAAACTGTGGATTTATTCCCAAAGATTGAGGCGGAAACTAAACGGCGGATTTATTCCCGAAGATTGAGAGTGAAATTGTGTGCTCTAACATGAACATGAGTGAAGGTGAGAGGAGGAGCGAAGGAGAACTCTGGCTCAACGGGAACTCAGACAATCTGCAGACACAACTCCAGAGAGAATGGATTTCACAAAGTCTGTTTGTATCTGCATCTTGTGCTTCATCATGTATGTGGACTCCCCCTCTGTAGACTCTCAGATCACTGTACCTGCTCGAGAGGGAAACACAGCGGTCCTGCCATGTAAATTACACGTCACTACTGCCCAAGCACTACATGTCTCATGGAGTATTGGTGATGAGGTTGTGTTTGAGCGATGCGGTGAGGAGACATTTCAGCGATCAGGATATGAGGATCGTGTGGACGTTCCTGAGGAGGAACTGCTTAAAGGAAACTGTTCCCTGGTGTTGAAGAACATCAGAAACACTGATCAGGGAATCTACACCTGTTCACTGATGACAGGACACAGGAAGAGATCTGCCATGACCAACAAGGACTTCATCCAGAGTGTTACACTCCTCCTAGATCGTTAAATTAATACTGGAGCTTTAACGTTTTATCATATTTTGTACCTGCAACGCCATTAAACTCTGATTGTTCAAAActaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578679.1 lncRNA upstream 43263 2220567 ~ 2226796 (+) True LOC113545551
TU168530 lncRNA upstream 43280 2220676 ~ 2226779 (+) False LOC113545551
TU168532 lncRNA upstream 43280 2220676 ~ 2226779 (+) False LOC113545551
TU168455 lncRNA upstream 123986 2069238 ~ 2146073 (+) False LOC113545687
TU168467 lncRNA upstream 144663 2084785 ~ 2125396 (+) True G142305
XR_004578870.1 lncRNA downstream 7597 2279183 ~ 2279887 (+) True LOC117598179
XR_004578871.1 lncRNA downstream 7890 2279476 ~ 2279887 (+) False LOC117598179
TU168578 lncRNA downstream 8774 2280360 ~ 2286141 (+) True G142391
TU168565 lncRNA downstream 27398 2298984 ~ 2301918 (+) True G142385
XR_004578869.1 lncRNA downstream 27590 2299176 ~ 2300055 (+) True LOC117598178
XM_034307393.1 mRNA upstream 10585 2257540 ~ 2259474 (+) True LOC117598027
XM_034307654.1 mRNA upstream 14223 2249486 ~ 2255836 (+) True LOC113545612
XM_034307655.1 mRNA upstream 30760 2226921 ~ 2239299 (+) True LOC113545586
XM_026945107.2 mRNA upstream 52617 2206923 ~ 2217442 (+) False lgals17
XM_034307693.1 mRNA downstream 2005 2273591 ~ 2274763 (+) True LOC117598176
XM_034307694.1 mRNA downstream 5413 2276999 ~ 2277996 (+) True LOC117598177
XM_034307690.1 mRNA downstream 16512 2288098 ~ 2291206 (+) False LOC117598174
XM_034307689.1 mRNA downstream 18091 2289677 ~ 2291206 (+) True LOC117598174
XM_034307688.1 mRNA downstream 18667 2290253 ~ 2291206 (+) False LOC117598174
TU168470 other upstream 154067 2115040 ~ 2115992 (+) False LOC113545687
TU168103 other upstream 649398 1615178 ~ 1620661 (+) False LOC113523891
TU168100 other upstream 656723 1611511 ~ 1613336 (+) True G142093
TU167713 other upstream 1097715 1129476 ~ 1172344 (+) True G141825
LOC117598126 other upstream 1166796 1102632 ~ 1103263 (+) True LOC117598126
XR_004578872.1 other downstream 7493 2279079 ~ 2279887 (+) False LOC117598179
XR_004578868.1 other downstream 16512 2288098 ~ 2288639 (+) False LOC117598174
XR_004578865.1 other downstream 24707 2296293 ~ 2297706 (+) True LOC117598173
XR_004578867.1 other downstream 25047 2296633 ~ 2297706 (+) False LOC117598173
XR_004578866.1 other downstream 25373 2296959 ~ 2297706 (+) False LOC117598173

Expression Profile