RNA id: XM_034307199.1


Basic Information

Item Value
RNA id XM_034307199.1
length 2272
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC117597937
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 4902900 ~ 4905863 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAGCTGACTAGCTGGGgagagaggcagtgagagatttacagtgttcatttcaGCTGTGATTTTCCACACAACGAGCTGAAATGATCAATATTCAGATGATGACgcatcaaagaaaaaaatgcagaggaAAGAGTGAATCAAATGGGCAAGCATATTGCAAGTGCGAGGCAGAAAGCAAGTGAGAAAGGGAGTGGAGAGAcagtgcaagagagagagagaaagagcacaaGCCAGAATGAGCTAGCGAGAGAGGGATAAATGGCACGGATGATCGACAACACTTTGCTGTCTGCAGCTTGCTAGCTTTCAGCCCACGGCTCTGGAGAAAACCCAAAATATACCATGGAATTTCTTAATTTGTTTCAGATCAGGAGGCTTGGTATTTCTTTACTACTTTTTGCATTCACTCCATTGGCTTTTTTCCCCTTGGATTTGTCCTTCGTCTGGCTTTTCCAGAAGTCTGCAGAAAAGGACAGTTGAATGCAGTCACTGATGTTCACAAAAGAATGGgttttcattccaaggTGGCCATTGGCGGGACAAGCACCAGCAGCACTTTGTGTAATCAGCATGCTACTGTGCCTCCCTCCTGCGTCATGCACAGCCTGCCCACAGAAATGCCGTTGCGAGGACCTGCAGTTTTACTGCGACACGCAGGGACTCCTGGCGCCCCCAGATGGCGTGGACAGAGGAGCCCTTGGACTCTCGCTCCGGCACAACAGCTTCACCGAGCTGAGCCCTGACCAATTTTTTGGCTTCACCCAGCTAACCTGGCTCCATTTGGACCATAACCAAATACTCAACGTGCATGAAGATGCCTTCCAGGGGCTTTACAAGCTCAAGGACCTGAACCTGAGCTCCAACCGCATCACTAAGCTGCCCAACACAACCTTCATCCACCTTATCAACCTCCAAATCCTGGATCTATCCTTTAACCAGATGACTGCACTGGAGCCTGAGCTCTTTCATGGGCTTCGGAAGCTCCAGATCCTCCATCTGAGGTCCAATTTACTGAGGACTATGCCTGTGCGAGCCTTCTGGGACTGCTGGAGTCTGGAGTACCTTGGTTTAAGCAACAACCGGCTTCGGAGCCTGGCGCGGAATGGATTCGCTGGGCTAATAAAGCTACAGGAACTCCATTTGGAACACAACCACTTGACCAAGATCAATCTGGCCCACTTCCCACGTCTTGTCACCCTCCAGTTCCTCTATCTGCAATGGAACAAGATTAACAATTTAACATGTACCATGGAGTGGGAGTGGACCACTCTGGAAAAACTGGATCTAACTGGGAATGAGATACGCACGCTAACCCCTGAAGTGTTTGAAACTTTACCAAACCTTAAGGTTCTGCTGCTGGATAACAACAAGTTGACCAGCCTTGATACCCAAACCACGGATATGTGGAAGTCTCTGAACACCATCGGGTTGTCCAGCAACCTTTGGGAATGTACCAATAGAATCTGCAACTTGGCCAGTTGGCTTAGTAAGTTTAAGGGTCGATGGGAGCAATCCATCCTATGCCACAGTCCTGAGTACACACAGGGTGAGGAAATACTAGATGCTGTTCATGGATTCCAACTCTGTCAAAACATCTTAGCGCCTATTGCACCGACCAGCACTACGAGGGAGGCCACGTTACCCCAACAATTCACTAGATCTTTGTTTGGGAATATGCAGACACCAACACAGGACTTCTATGCAGAGAATTTGGGGAGCTTTAGTATTTTCACCACTGCTGCCAAAACCCCACAAACTACTGTTTCTACAACTACAGATGAGATGGAAGATGTTACTGATGACTCTGCTCTGATGGACAACATGGTACTAACCCAGACAATAATTGTAGGTACCAtggctcttttgtttttcttttttctcatcaTTTTCATAGTGTACATCTCTTGGAAGTGCTGCCCACACTCTATACGACGAACCCACCACTGCTTGACCATTCAGAATAGACAGCAGAACCAGACACAAGAAAGGCAGCCGATGGCAGACCCAGCCACACAGTTGCCctataatgaatatgagctgaCTCACAACGACGGTGCACTTGTAATCATAAATGGCTACGGGCAGTGCAAGTGTCAGCAACCATCTTACAAAGAGTGTGAAGTATAAACACTATTTATTTACTCAGATGATTGGTTGACCATTTTGACCATTTCAGATAATACAAGATTTGTTTATGAATATTTCagtttgtaaagaaaaatgaaatacatgcTTTTTTCCTGGCTTtgaaattcaataaaaatgtgaaGG

Function

GO: NA

KEGG:

id description
K16665 LRRTM1_2; leucine-rich repeat transmembrane neuronal protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169895 lncRNA upstream 188797 4713200 ~ 4714103 (+) True G143451
TU169894 lncRNA upstream 195748 4706907 ~ 4707152 (+) True G143450
TU169892 lncRNA upstream 199117 4703562 ~ 4703783 (+) True G143448
TU169884 lncRNA upstream 208039 4694384 ~ 4694861 (+) True G143440
TU169689 lncRNA upstream 280749 4615242 ~ 4622151 (+) True G143269
TU169942 lncRNA downstream 3457 4909320 ~ 4909523 (+) True G143494
TU169958 lncRNA downstream 204846 5110709 ~ 5111040 (+) True G143510
TU169966 lncRNA downstream 286198 5192061 ~ 5193287 (+) False LOC117598093
XR_004578816.1 lncRNA downstream 286204 5192067 ~ 5194949 (+) True LOC117598093
XR_004578817.1 lncRNA downstream 286204 5192067 ~ 5194949 (+) False LOC117598093
XM_026947390.2 mRNA upstream 212287 4671050 ~ 4690613 (+) True si:dkey-206d17.12
XM_026947358.2 mRNA upstream 271474 4606321 ~ 4631426 (+) True thrap3b
XM_026947316.2 mRNA upstream 309312 4537496 ~ 4593588 (+) False map7d1b
XM_026947374.2 mRNA downstream 509054 5414917 ~ 5420160 (+) True LOC113547138
XM_034307132.1 mRNA downstream 659458 5565321 ~ 5582749 (+) False LOC113547141
XM_034307131.1 mRNA downstream 659553 5565416 ~ 5582749 (+) True LOC113547141
XM_026947312.2 mRNA downstream 835044 5740907 ~ 5747940 (+) True gpx3
XM_026947344.2 mRNA downstream 932763 5838626 ~ 5850058 (+) True LOC113547120
TU169682 other upstream 397845 4484843 ~ 4505055 (+) False fhl3b
TU169683 other upstream 397845 4484883 ~ 4505055 (+) False fhl3b
TU168849 other upstream 1440729 3397670 ~ 3462171 (+) False G142576
TU168853 other upstream 1506833 3388253 ~ 3396067 (+) True LOC113523845
XR_003402471.1 other upstream 1534562 3368205 ~ 3368338 (+) True LOC113523858
TU170101 other downstream 835095 5740958 ~ 5747944 (+) False gpx3
TU170815 other downstream 1681348 6587211 ~ 6593605 (+) True LOC113547098
TU170969 other downstream 1874126 6779989 ~ 6798904 (+) False G144353
LOC113547145 other downstream 1877653 6783516 ~ 6785437 (+) True LOC113547145
TU170957 other downstream 1890946 6796809 ~ 6870576 (+) True G144353

Expression Profile