RNA id: XM_034307227.1


Basic Information

Item Value
RNA id XM_034307227.1
length 2939
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC113547108
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 5998467 ~ 6037800 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTAGCTGACCTGCTCAGccTCCATTTCTGGAATCACTTCCCTTTAGACGTCTTATAATGGAATCGGCAGAGATTTCTTCACAAAAGCCTCCATGTTCTCCGTGTCCTGCTCATTCACAGGACTTCTAGGTCCAGAGAAGCTGTAGTACACAAGGCTGATACAGCAGGGCACACATCAGGAAGAGTGGATTGTGCCAGCCATACCCAGAGACACTTGTATAAATCAAGTTAGCAGAATCACCCCATAACCTTGCCCACTGCCTGGAGTGAGGTGTCGGTCAACTCAAATAGTTGTGATTTTCTGTAGCAATTGTGACAGGCCTAGTCATAagCTTTGTGATGTCACATCGGAGACCTGCATGACATCAGACTCTGGGGACTATCAGAACCCTGTAAAAAAGGAAGAACCTGAAGATGAAGGCTATCTCTGTGGTGGGACTTCAAGCCCTGTGGGATTAGTCATCACTGTTGACCAACGGACTGAAGAATTCCAGAGGAAACTTGTAAAAGAGGAAGAACCTGAAAATGATGAGTTTCTCTACTGTGAGGACTGCAGATCCTACTTCACCAACAAGTGTGAAGTTCATGGTCCTGCTCTTTTCATCTTTGATACCCCTGTTCCCATGGGGATTGCTGACCGAGCCATACAAACCCTTCCACCAGGTCTAGAGGTTGGAAAGTCTGACATTCCTGATGCAGGCCTTGGGGTGTTCAATAAGGGGGAGACTATTCCAATTGGTGCACACTTTGGGCCATGTGAGGGAGACCTGGTGGACAGAGAGGAAGCCATGAATAGTGGCTATTCTTGGGTGaTATCCAAGAGCAGTCAATGTGATGAATACATAGATGCCAAGAGAGAGATGCATTCTAACTGGATGAGGTATGTGAATTGTGCTTGTAATGTTAAAGAACAGAATCTAGTGGCATTCCAGTATCGAGGGGGGATTTTCTACCGTTGCTGTCAACCGATCAAAACAGGACAGGAGCTCTTGATGTGGCACGAAGATGACTATGGCAAAGACCTCGGCCTTGCTTTCGACAACCTCTGGAAGAAAAAGTGCTCCTCAAATGAAATGAATGATACCCTGCAGCAAGTCTTCTGCTCCTGGTGTCCAATTTCCTACATGTCTCAAATTTACCTTGAAAATCACATAAGGAGAAGCCATTATAAGGAATATGTcaaagtgaaaaatgtgaatCTGATGCCCACAAGAACCTCCAGTAGACAACAAACATGCTCTGGTACTTTCCACACTAACGCCACTCATGGACAAATGCAGAAAGAAATTCATCGCTGCTCAAattgtgggaagagttttactcacCGGAATAATCTCAAAACCCACCAGTGTGTCCACATGGGTGAGAATCTACACCACTGCTCACAGAGTGAAAAAAGTTTTCATGAAAGGGATGTTCTTCAGCGACACCAGAGCAGTCACACAAGAGAGAAAGCATATCATTGCTCACAGTGTGGCAAGTGTTTTACACGACAGAATGCTCTCCAAACCCATCTGCttattcacacaggagagaagccgtatcactgcttacattgtgggaagagttttagaCGACAGGGTAATCTTCAaacacaccagcgcattcacacaggagagaagccttatcactgctcacagtgtggtaAGAGTTTTAATCACCAAAGTAGTCTCATAAAACACCAGcgtattcacacaggagagaagccctACCATTGCccacagtgtggaaagagttttaataATGGGAGTAATTACAAACAACACCAACGTATTCACATGGTAGAGAAGCCATATCTCTGTTCTCattgtggaaagagttttaacAACAGCACTACTCTACAAAGACACCAgagcattcacacaggagagaagccatatcactgctcacagtgtgggaggAATTTTACCTACCGGAGTCATCTCAAAGATCAtgagcgcattcacacaggagaaaagccTTATCACTGCTCCCactgtggaaagagttttaataaaagaaatactcTAAAGAGACACCTGCGTATTCACACAGAAGTGAAGTcttatcactgctcacagtgtgggaagggTTTTAATCAACAGAGTGATCTCCAAAGACACCAACGCATTCACACAGaagagaagccgtatcagtgctcacagtgtgggaaaagGTTTACTCTTAGTGATACTCTCAGACGACACCAgtacattcacacaggagagaagccatatcagtgctcacagtgtggaaagaggtTTAATCATCACAGTGATCAACAAAAACACCAACGCATCCACACAGGAGAGAGgccatatcactgctcacattGTGGGAAGAGCTTCGTTCAACAGAGTGATCTCCAGAGACATTGGcgtattcacacaggagagaagccgtatcagtgctcacagtgtggaaagagttttagaCAGCAGAATGCTTTCCAAACAcatcagctcattcacacaggagagaagccgtatcactgctcagagtgtggaaagagttttaatcAAAAGGGTGTTCTCCAAAGACACCAGAGGATTCACACaagagagaagccgtatcactgcttaCTTTGTGGCAAGAGTTTTAGACGACATAGTCATCTCCGACAAcatcagctcattcacacaggagagaagctgtatcactgctcacagtgtggacaGAGATTCACttattcaaatacatttaaGAAACACAAGTGCACCAACATAGAGCCAACAGCTAATGATACATCTTCAAATCCAGATACGTGATTGCCTTTACTGCCATTGTTTACATTTGTGTGTCATGATTTGTTTAAACTATTTGTGTGTAGATATACATTGTATGTCCAATAATAtccggacacctgaccatcacaccatatgtggttcttccccaaactgtcacaaagttgggagcacacagttgtatagaatgtctttgtatgttgtagcttgaagatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170347 lncRNA upstream 14293 5978102 ~ 5984378 (+) True G143832
TU170268 lncRNA upstream 62342 5932581 ~ 5936329 (+) True G143772
TU170260 lncRNA upstream 74919 5922811 ~ 5923752 (+) True G143766
TU170248 lncRNA upstream 85930 5910983 ~ 5912741 (+) True G143757
TU170524 lncRNA downstream 337613 6356317 ~ 6357920 (+) True G143987
XR_003404779.2 lncRNA downstream 403432 6422136 ~ 6428434 (+) True LOC113547099
TU170785 lncRNA downstream 525668 6544372 ~ 6544916 (+) True G144221
TU170834 lncRNA downstream 609647 6628351 ~ 6684107 (+) True G144256
TU170960 lncRNA downstream 764634 6783338 ~ 6830066 (+) False G144353
XM_026947347.2 mRNA upstream 23458 5967742 ~ 5975213 (+) True ppp2caa
XM_026947346.2 mRNA upstream 95208 5865457 ~ 5903463 (+) False n4bp3
XM_026947345.2 mRNA upstream 95208 5881846 ~ 5903463 (+) True n4bp3
XM_034307400.1 mRNA upstream 137464 5854230 ~ 5861207 (+) True LOC113547110
XM_026947344.2 mRNA upstream 148613 5838626 ~ 5850058 (+) True LOC113547120
XM_034307234.1 mRNA downstream 7092 6025796 ~ 6034619 (+) True LOC113547149
XM_034307221.1 mRNA downstream 21024 6039728 ~ 6075245 (+) False LOC113547147
XM_026947382.2 mRNA downstream 21024 6039728 ~ 6075240 (+) False LOC113547147
XM_034307223.1 mRNA downstream 21024 6039728 ~ 6065836 (+) True LOC113547147
XM_026947381.2 mRNA downstream 21024 6039728 ~ 6065836 (+) False LOC113547147
TU170101 other upstream 250727 5740958 ~ 5747944 (+) False gpx3
TU169682 other upstream 1493616 4484843 ~ 4505055 (+) False fhl3b
TU169683 other upstream 1493616 4484883 ~ 4505055 (+) False fhl3b
TU168849 other upstream 2536500 3397670 ~ 3462171 (+) False G142576
TU168853 other upstream 2602604 3388253 ~ 3396067 (+) True LOC113523845
TU170815 other downstream 568507 6587211 ~ 6593605 (+) True LOC113547098
TU170969 other downstream 761285 6779989 ~ 6798904 (+) False G144353
LOC113547145 other downstream 764812 6783516 ~ 6785437 (+) True LOC113547145
TU170957 other downstream 778105 6796809 ~ 6870576 (+) True G144353
LOC117598156 other downstream 778268 6796972 ~ 6798904 (+) True LOC117598156

Expression Profile