RNA id: XM_034307233.1


Basic Information

Item Value
RNA id XM_034307233.1
length 4240
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC113547108
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 5998467 ~ 6037800 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGACCAGATGTTGATTCTCCAACCGCTAGAGAGTCACAagagcagaagaagaaggacTGCGGCTCTGTATGATTTAATCCTCTACACATGAGaatatttctgacaggattCCACAGaacctgaatgaatgaaatagaaAAGCTTGTTACTGTGCGCATTTGAGGTGTTGACTCGGTTTTGTTTTCAAGCCCGAGccTCCATTTCTGGAATCACTTCCCTTTAGACGTCTTATAATGGAATCGGCAGAGATTTCTTCACAAAAGCCTCCATGTTCTCCGTGTCCTGCTCATTCACAGCTTTGTGATGTCACATCGGAGACCTGCATGACATCAGACTCTGGGGACTATCAGAACCCTGTAAAAAAGGAAGAACCTGAAGATGAAGGCTATCTCTGTGGTGGGACTTCAAGCCCTGTGGGATTAGTCATCACTGTTGACCAACGGACTGAAGAATTCCAGAGGAAACTTGTAAAAGAGGAAGAACCTGAAAATGATGAGTTTCTCTACTGTGAGGACTGCAGATCCTACTTCACCAACAAGTGTGAAGTTCATGGTCCTGCTCTTTTCATCTTTGATACCCCTGTTCCCATGGGGATTGCTGACCGAGCCATACAAACCCTTCCACCAGGTCTAGAGGTTGGAAAGTCTGACATTCCTGATGCAGGCCTTGGGGTGTTCAATAAGGGGGAGACTATTCCAATTGGTGCACACTTTGGGCCATGTGAGGGAGACCTGGTGGACAGAGAGGAAGCCATGAATAGTGGCTATTCTTGGGTGaTATCCAAGAGCAGTCAATGTGATGAATACATAGATGCCAAGAGAGAGATGCATTCTAACTGGATGAGGTATGTGAATTGTGCTTGTAATGTTAAAGAACAGAATCTAGTGGCATTCCAGTATCGAGGGGGGATTTTCTACCGTTGCTGTCAACCGATCAAAACAGGACAGGAGCTCTTGATGTGGCACGAAGATGACTATGGCAAAGACCTCGGCCTTGCTTTCGACAACCTCTGGAAGAAAAAGTGCTCCTCAAATGAAATGAATGATACCCTGCAGCAAGTCTTCTGCTCCTGGTGTCCAATTTCCTACATGTCTCAAATTTACCTTGAAAATCACATAAGGAGAAGCCATTATAAGGAATATGTcaaagtgaaaaatgtgaatCTGATGCCCACAAGAACCTCCAGTAGACAACAAACATGCTCTGGTACTTTCCACACTAACGCCACTCATGGACAAATGCAGAAAGAAATTCATCGCTGCTCAAattgtgggaagagttttactcacCGGAATAATCTCAAAACCCACCAGTGTGTCCACATGGGTGAGAATCTACACCACTGCTCACAGAGTGAAAAAAGTTTTCATGAAAGGGATGTTCTTCAGCGACACCAGAGCAGTCACACAAGAGAGAAAGCATATCATTGCTCACAGTGTGGCAAGTGTTTTACACGACAGAATGCTCTCCAAACCCATCTGCttattcacacaggagagaagccgtatcactgcttacattgtgggaagagttttagaCGACAGGGTAATCTTCAaacacaccagcgcattcacacaggagagaagccttatcactgctcacagtgtggtaAGAGTTTTAATCACCAAAGTAGTCTCATAAAACACCAGcgtattcacacaggagagaagccctACCATTGCccacagtgtggaaagagttttaataATGGGAGTAATTACAAACAACACCAACGTATTCACATGGTAGAGAAGCCATATCTCTGTTCTCattgtggaaagagttttaacAACAGCACTACTCTACAAAGACACCAgagcattcacacaggagagaagccatatcactgctcacagtgtgggaggAATTTTACCTACCGGAGTCATCTCAAAGATCAtgagcgcattcacacaggagaaaagccTTATCACTGCTCCCactgtggaaagagttttaataaaagaaatactcTAAAGAGACACCTGCGTATTCACACAGAAGTGAAGTcttatcactgctcacagtgtgggaagggTTTTAATCAACAGAGTGATCTCCAAAGACACCAACGCATTCACACAGaagagaagccgtatcagtgctcacagtgtgggaaaagGTTTACTCTTAGTGATACTCTCAGACGACACCAgtacattcacacaggagagaagccatatcagtgctcacagtgtggaaagaggtTTAATCATCACAGTGATCAACAAAAACACCAACGCATCCACACAGGAGAGAGgccatatcactgctcacattGTGGGAAGAGCTTCGTTCAACAGAGTGATCTCCAGAGACATTGGcgtattcacacaggagagaagccgtatcagtgctcacagtgtggaaagagttttagaCAGCAGAATGCTTTCCAAACAcatcagctcattcacacaggagagaagccgtatcactgctcagagtgtggaaagagttttaatcAAAAGGGTGTTCTCCAAAGACACCAGAGGATTCACACaagagagaagccgtatcactgcttaCTTTGTGGCAAGAGTTTTAGACGACATAGTCATCTCCGACAAcatcagctcattcacacaggagagaagcCCTATCATTGCTCACAGTGCGGGAAGAGCTTTAGAAGACAGAGTCATCTTCGaacacaccagcgcattcacacaggagagaagccgtatcactgttTACAGTGTGGCAAGAGTTTTACTGACCAGAGTACACTCATAACACATAAGCgtattcacacaggagaaaaaccGTATCATTGCTCCCAGTGTGGAAAGAGGTTTAATAAAGGGAGTAATTTCAAACAACACCAGcgtattcacacaggagagaagccatatctctgttcacagtgtggaaagagttttaccTGCCAGAGACATCTCAAAGATCATGAGCGCATTCACACCGAAGAGAAGCCTTGTCATTGCTCACACTGTGGAAAGATTTTTACAAAACGAAATACTCTAAAAAGACACCTGTGTATTCACACAGTAGTGAAgccatatcactgctcacagtgcgGGAAGACTTTTACACGGCCGAGCCATCTCAAAGACCAtaagcgcattcacacaggagagaagccgtttcactgctcacagtgtggaaagagttttaataAAAGAAGTACTCTACAAAGACACCAGCTCATTCACAAAGAAGTGAAGCCGTATCAATGCTCACAGTGTTGGAAAAGGTTTAATCAACAGAGTGATCTCCAAAGACACCAGcgtattcacacaggagagaagccgtatcagtgctcacagtgtggaaaaagttttactaACCAGTGTCATCTCCGACAGCAtcagcacattcacacaggagagaagccgtttcactgctcacagtgtgggaagagttttaatcaaCAGAGGTATCTTGAAAGACACAAGAGCATTCACacgggagagaagccgtattactgctcacagtgtgggaagagttttaatcgACAGAGTCATCTCCAAACACACGAGCGCATTCACACGGGAGAGaaaccgtatcactgctcacagtgtgggaagagcttTAATCAACAGAATGATCTCCAaagacaccagcgcattcacacaggagagaagccgtatcagtgcTCAGAATGTGGGAAGAGCTTTATTCAGCAGAGTGATCTTCAAAAACATCAGCgtgttcacacaggagagaagccgtatcactgctcacagtgtggacaAAGATTCACTTCTGTAAATTCATTTAAGACTCATAAATGCACCAATGTAGACCAGACAATTTAAAGTAGAACAAATAGCATGATTAGCTTAAATTATATATCAAAGTAGTAAAATTTAGCTATATTAATCTCAAATTAGCAACAATGATACATGCTTGGGACAATATAATATAGTACACAAATTTTACAGCATAACAGGATATTTATGACAAAAGTTCTTCAGCAGCTGTGCAAACACTGAGGTTCTGAAGCTGTAGTAATTGGAGTAATGAGAGTGGAGACGAGCTCTTTATACCTGGGGTTCCTCAGTTGTTTGCAACTAGCAATGCAAAGAGatttaacattcatttatgTTAATGCTGAGTGATGAAgtttttaagtataatttctgtCACAAACTTCAAAGTCATATATCTGTAGTATTTTATGTTCCTTGAACAAATTGGGCTTGGATGTATTATTTCTCCTGTTTCTCCTTTTAATTTCAAAACTactacacataaataaatgtacatatatttatttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170347 lncRNA upstream 14089 5978102 ~ 5984378 (+) True G143832
TU170268 lncRNA upstream 62138 5932581 ~ 5936329 (+) True G143772
TU170260 lncRNA upstream 74715 5922811 ~ 5923752 (+) True G143766
TU170248 lncRNA upstream 85726 5910983 ~ 5912741 (+) True G143757
TU170250 lncRNA upstream 85726 5911057 ~ 5912741 (+) False G143757
TU170524 lncRNA downstream 318517 6356317 ~ 6357920 (+) True G143987
XR_003404779.2 lncRNA downstream 384336 6422136 ~ 6428434 (+) True LOC113547099
TU170785 lncRNA downstream 506572 6544372 ~ 6544916 (+) True G144221
TU170834 lncRNA downstream 590551 6628351 ~ 6684107 (+) True G144256
TU170960 lncRNA downstream 745538 6783338 ~ 6830066 (+) False G144353
XM_026947347.2 mRNA upstream 23254 5967742 ~ 5975213 (+) True ppp2caa
XM_026947346.2 mRNA upstream 95004 5865457 ~ 5903463 (+) False n4bp3
XM_026947345.2 mRNA upstream 95004 5881846 ~ 5903463 (+) True n4bp3
XM_034307400.1 mRNA upstream 137260 5854230 ~ 5861207 (+) True LOC113547110
XM_026947344.2 mRNA upstream 148409 5838626 ~ 5850058 (+) True LOC113547120
XM_034307221.1 mRNA downstream 1928 6039728 ~ 6075245 (+) False LOC113547147
XM_026947382.2 mRNA downstream 1928 6039728 ~ 6075240 (+) False LOC113547147
XM_034307223.1 mRNA downstream 1928 6039728 ~ 6065836 (+) True LOC113547147
XM_026947381.2 mRNA downstream 1928 6039728 ~ 6065836 (+) False LOC113547147
XM_034307222.1 mRNA downstream 21956 6059756 ~ 6063642 (+) False LOC113547147
TU170101 other upstream 250523 5740958 ~ 5747944 (+) False gpx3
TU169682 other upstream 1493412 4484843 ~ 4505055 (+) False fhl3b
TU169683 other upstream 1493412 4484883 ~ 4505055 (+) False fhl3b
TU168849 other upstream 2536296 3397670 ~ 3462171 (+) False G142576
TU168853 other upstream 2602400 3388253 ~ 3396067 (+) True LOC113523845
TU170815 other downstream 549411 6587211 ~ 6593605 (+) True LOC113547098
TU170969 other downstream 742189 6779989 ~ 6798904 (+) False G144353
LOC113547145 other downstream 745716 6783516 ~ 6785437 (+) True LOC113547145
TU170957 other downstream 759009 6796809 ~ 6870576 (+) True G144353
LOC117598156 other downstream 759172 6796972 ~ 6798904 (+) True LOC117598156

Expression Profile