RNA id: XM_034307277.1


Basic Information

Item Value
RNA id XM_034307277.1
length 2134
RNA type mRNA
GC content 0.43
exon number 11
gene id hsd17b12a
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18622188 ~ 18634768 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTTGTGGGGGTGTGATGCCACAACCTGCTTATAAAGGGGCTCGCATGTTGTTGCTCTAAATCAGTGCATAACGCCTAATTTTGTGGGTCAGACAGCACGCTCGCCCAGCCGTGTACACGGAGCACTTTAACATGGTGAAGATGCTTCAGCTTGCCGAGACTCCTCTCTACTGGGTCGGTGCAGTCACCACGGCCTCGCTGGCGCTGTGGCTCCTCTACCACATCATCTCCGGCTTCAGGATATGGGTGCTAGGAAATGGAGATTTGCTCTCCCCCAGATTGGGGAAATGGGCAGTTGTAACAGGAGCCACAGATGGAATTGGGAAATCCTATGCGGAGGAGCTTGCTCGACGAGGATTCTCCATGGTGCTTATCAGTCGCTCACAGGAGAAGCTGGATGATGTTGCCAAAAGTCAGTTTGATGTGGAGACCAAGACCATTGCTGTGGATTTTGGTCAGATTGACATTTATCCTAAGATTAATGCTGAACTTGCTGGGCTAGAAATAGGAGTCCTTGtAAACAATGTTGGCATTTCCTACTCTTACCCTGAGTTCTTTCTGCACATCCCTGACCTGGACAATttcaTCAACACAATGATTAATGTCAACATAACTTCAGTGTGTCAGATGACTCGTCTGGTTTTGCCCAAAATGGAAGCTAGGGCAAAAGGTGTAATTCTCAACATCTCTTCTGCCAGTGGCATGTACCCAGTTCCACTGCTCACTGTCTATTCCTCCACCAAGGCTTTTGTTGACTTCTTCTCCCGTGGACTTCAAGCAGAGTACAAGTGCAAAGGGATCATTATTCAGAGCGTGCTGCCTTTCTTCGTGGCCACCAAAATGACGAAGATCAGGAAACCCACTCTGGACAAGCCTACTCCTGAGCGTTATGTAGCTGCTGAGCTAACCACCGTGGGTCTACAGGACCAGACCAATGGTTATTTCCCCCATGCAGTCATGGGATGGGCAACTACTGTTCTAGTTCCCATCAAACTGGTCATTTACTTTGGCATGCGCATGAACAAGGCTCAACGTGGCGGTTACCTCAGGAGGAGAAAGCTGCGATAGCTTGTAGATGTCGTCTGAAGGAAAATGACAAATCGCATCCAAAGTGTCctttccttcctgtttgcttAGTATGGGTATGACTGCCTGACTTTTGTATCAGTGTTTGAGTAGTTCTGTGTCAAGGcttttgtattaaatatgtCTCATTAGACAAGCCTCTTTGTTCTTGTAAGAACTACTGACCACAGATGTCACACTGACACATGTTGAATGAAGTAGTTTAAACAGGGCTTTTAAATTGGTGAGCGGTTCTCTTttggcttgtgtgatattgggAATGGGTGTGTAATTTATAACTAACAGGGTTTAAAGAGTGTTGCATTGGTGCATGGAGGGCTGTTTTCACTGCTGTTCTAAGCAGATGGTATTTGAATGGAGATGGGTTTCATAAACATATTTTCCTGTGTACAAAAGCCACACGTGCACCTGATTACTTGCTCAATGCCAGTTCCCTGATACGTTTGTTTACAGTGATTAAGAAGGTGAAATTTATACATTGTCTTTTCCTTAGTTGTTGAATGATCATGAGTATTGGCCtttttaagcctttttttttacattttgtaccatttattatttcttagtATTTATGAAATTGGTGGTGggtttttggtgttttatatatgtttactAGATATTTGCAATGGTGCTTTTTATTATATTGAGCCACGTTGGACACACTGTCAATCTCTGATCATTCAGAATGATGTGCCTTACAGAAATGTACAGGAACCTGCTGTTAATGGAGATCTCTACCAGCTGCTGTTCTTTCTTAAATGTAGCAATGCACTTActgaccttttttaaaaaacttcacCAAAGATTGTACCATGCCAAATGACTCTTTTTAGGGGTCTTTCTATGACCTAGATCTCCATTTGAACCAAACCCAGGCAAATGAAAGCGCTCAGGTATTTGACCCTTGCTGGTTGTATCACAGGGAAAACTTGAATGTTTACATTCCAAAATATTTAGGCATGGACTACAGTGTGTGCCTTTGTTCCACCAAATCATGCTTGTGTGTTAAACTTACAGCTTGTCTTTTTCGAATAAAGATGTGATTTTA

Function

GO:

id name namespace
GO:0006703 estrogen biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004303 estradiol 17-beta-dehydrogenase activity molecular_function

KEGG:

id description
K10251 HSD17B12, KAR, IFA38; 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578835.1 lncRNA upstream 1367 18601539 ~ 18620821 (+) True LOC113530068
XR_004578834.1 lncRNA upstream 1367 18602144 ~ 18620821 (+) False LOC113530068
XR_004578837.1 lncRNA upstream 1367 18602145 ~ 18620821 (+) False LOC113530068
XR_004578836.1 lncRNA upstream 1368 18601568 ~ 18620820 (+) False LOC113530068
TU178803 lncRNA upstream 70051 18551893 ~ 18552137 (+) True G150958
TU178948 lncRNA downstream 113059 18747827 ~ 18796239 (+) False nfat5a
TU178978 lncRNA downstream 310507 18945275 ~ 18945942 (+) True G151093
TU178969 lncRNA downstream 320281 18955049 ~ 18997932 (+) True G151084
TU179021 lncRNA downstream 475075 19109843 ~ 19110973 (+) True G151134
TU179305 lncRNA downstream 591881 19226649 ~ 19227893 (+) True G151395
XM_026919459.2 mRNA upstream 35496 18579111 ~ 18586692 (+) True api5
XM_034307441.1 mRNA upstream 44822 18568613 ~ 18577366 (+) False prr5l
XM_026919460.2 mRNA upstream 44823 18568613 ~ 18577365 (+) True prr5l
XM_034307440.1 mRNA upstream 44823 18569086 ~ 18577365 (+) False prr5l
XM_026919196.2 mRNA upstream 118197 18491745 ~ 18503991 (+) True brd1b
XM_034307276.1 mRNA downstream 1921 18636689 ~ 18645706 (+) False alkbh3
XM_026919132.2 mRNA downstream 1921 18636689 ~ 18645706 (+) False alkbh3
XM_026919133.2 mRNA downstream 2006 18636774 ~ 18645706 (+) False alkbh3
XM_034307274.1 mRNA downstream 2025 18636793 ~ 18645706 (+) False alkbh3
XM_034307273.1 mRNA downstream 2045 18636813 ~ 18645706 (+) False alkbh3
TU178368 other upstream 779653 17834237 ~ 17842535 (+) True G150589
TU178369 other upstream 779653 17834237 ~ 17842535 (+) False G150589
TU178370 other upstream 779653 17834237 ~ 17842535 (+) False G150589
trnav-aac_18 other upstream 2580941 16041175 ~ 16041247 (+) True trnav-aac_18
XR_003403067.2 other upstream 2802615 15807990 ~ 15819573 (+) False LOC113529564
XR_004578809.1 other downstream 40242 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 86827 18721595 ~ 18724686 (+) True urahb
XR_004578793.1 other downstream 441827 19076595 ~ 19077868 (+) True LOC117598072
TU179056 other downstream 486396 19121164 ~ 19125132 (+) False faap24
TU179313 other downstream 625856 19260624 ~ 19263893 (+) True G151401

Expression Profile