RNA id: XM_034307337.1


Basic Information

Item Value
RNA id XM_034307337.1
length 3701
RNA type mRNA
GC content 0.56
exon number 39
gene id LOC113523835
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 4009919 ~ 4046648 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCGGAGGAGACACTTTAACATGGGCCGCAAGTTCCAGAGTCGCGTGCACAGGCTGTCTGGGccagtgtgtgggtgtgtgtgattgtgtgtgtgtgataagagCGGTGTGTGGTGGAGGAAGTCACACGTCTAGTGGTTTCTCTCTAGTGTAGAACGAGTAGAGTCACGTTTGGCCCGGACCGGACCGGACTGAACACACACGGCTACGGACATGCGCAGCTTTAGCGCTACACGgaggTGGGCGTGGCAGCGAGTGATGGCGGAGTGTATGACTCGTCTAGCTCTCCTCGCCATGCTGTGTGCTCCTGCTCTCGCACaGCTGGATTTAAACAGACTTGATGGAGACACTGTGTGCCCACCACTGAGGAATGGACAAGATGACCTTCCAGgtttcGACCTGATCACACAGTTGCAGTCGGACGTGACTCCTCTGAAAGGTGTGAGGAAGGTGGAGGGCTCCACGTCCACTCAGTTGGCGTACAGACTCGACCGTGAGGCTAACTTCCAGATCCCCACCAgGCCAACGTTCCCCAAAGGCTTCCCGGCCGAGTACTCGTTCATGACCACGTTCCGCATGATCAAGAACACGGTGAACAAAGTGTGGAACCTGTGGCAGGTGGTGGACGAGGACGGCGTGAAGCAGGTGGGGATGCGTCTGAACGGGGACCAGCAGGCCCTCGAGTTCTTCCTCACCACCTTGGACGGAGACCTGCAGACAGTCACCTTCCCCGGCCTCTCTGTGCTCTTTAACACCAAGTGGCACAAAGTGATGATCGGCGTGGAGAGCGAGATGGTCACGCTGTACGTGGACTGCCAGCCCGTCGACCAGAAGCCCATTAAGGAGAAGGGTTACGTCAGCACGGATGGAGAGACGCTCTTCGGGAGACTGGACTCTGATCccaacagctctgtggtgTTTGAGGTGCAGTGGATGCTGATTCACTGTGACCCAAAgagagctcagagagagagctgcACCGAACTTCCTGTAGCCGAGATGTATGCCAATGCTGAGCCCGACCCCAAACCGATCCCTGGGCCTGCTGGACCCCCGGGTCCTGCAGGACCTCGGGGACCTCCTGGGGAAGACGGTCGTGATGGAAGAGATGGTATTCCAGGAACCCCGGGCACTCCTGGTGCATCTggcaGTAAAGGGGAAAAGGGTGAGATTGGTCTGCCAGGACAGAGAGGACTACAAGGACTTCCAGGACCTAGTGGACCAATGGGGCCTATGGGGCCGATGGGGCCGAGAGGACCTGTGGGAGAAAGAGGGCTTCAGGGTTTCCCAGGTCCAGCTGGACCTCCTgGACCCGAGACTACTGGACCCCCTggaGCTCCAGGCAAACCCGGGATCCCAGGAAACGAGGGCAACATTGGACCTGAGGGCCCACCCGGACCCAGAGGAACCAGTGGATCTCCAGGACCTCCTGGCCCACCCGGACCCCCCGGCCTACCTgGGACCGGTGGGAATCCTGAAGGAAGCGGGGAGACTtgTCAGGCTGTGTGCCCTGCTGGACCTCAGGGACTTCCAGGCCTGCCAGGCATGAAGGGACACAGAGGTCTCCCCGGAGTGGACGGACTGCCAGGTATCGCAGGTGAAAAGGGAGATCGAGGAGCGGTAGGAGAACCCGGTCCTCAGGGACGTCCAGGAGAAGATGGTCAGAGAGGGCCGATCGGTTACCCTGGAGAACACGGGGATAAGGGAGATCGGGGTCCTCCAGGTTTTAACGGCATTCCAGGACCCACAGGACCTCCAGGATCTCCGgGTGTCGAGGGTATCCGAGGACGTGATGGACCTCAGGGGCCTAAAGGTGATGAGGGTGCAGCAGGTACTCCAGGGCCCAGAGGTGCCACCGGTACCAAAGGAGAGGCTggGGACACAGGTAGAAATGGACTGGATGGAGAGCCGGGTCTTCCGGGAGAAAAGggaGAACCTGGACTACCTGGAGCTGGTGGACTCAGAGGCATTGTGGGAATACCAGGTTTACCAGGAAAGCAAGGGCTTGTGGGACCTGCGGGGCAAAAGggtgAGATTGGAGTCGAAGGTCCTGTAGGTCGAACTGGTCTTCCTGGTAAACCAGGAGAACAGGGACCTCCTGGAGAAGACGGGATCCCCGGAGTTAAAGGAGCCACTGGTGAATCGGGAAAGCCGGGTCCGATCGGTCCAGTGGGAGATCAGGGAATCCCGGGTGAGAAAGGAGAGCGTGGGGTCATGGGTCCTCGTGGGATCAAAGGTCACACAGGTCACAAAGGAGATCAGggTCCTGTAGGTCCATTTGGTCCGAAAGGAAGTGAGGGTGCTCCAGGCATTCCCGGCAGCACAGGAGGTAAAGGTGACCAgGGTCCTCCAGGCATTCCTGGAATCAAGGGAGATCGAGGAGAGAAAGGACAGAGAGGAGCGACCGGTGCTGATGGACGTCCAGGACAGCCGGGACACGAGGGACTCGCCGGACCTCAGGGAGCCCCGGGCCTGGAGGGGGACAGAGGAACCCCAGGACCACCAGGACCTCGAGGACTTCCTGGTCCCAAACTGAACGATGAGAAGATTCGTCAGATTTGTTCTGCTGTGGTTGAAGAACATCTGGATGCTTATAAGAAGGAATTGGTGAAGAAGCCTCTGCCCATTGGCCCCGGTAGCCCCGGACCTGCAGGTCCTCCTGGACCCCCTGGACCTGCTGGGGCTGCTGGAGGAGTTGGAGCGATGGGGCCTCCGGGCCCTCAGGGGCCTCCAGGCTTCTACGGCTTACCTGGAAAACAAGGACCTAAAGgTGATGCTGGGCCAAAAGGAGACAAAGGAGATAATGGTGTTGGAGTCCAAGGACCAGCTGGAGAGCCAGGAGTTCAAGGACCTCCTGGGAAGCCCGGCATTGGTAGAGACGGCCACGATGGCGCCCGAGGAGAAGCGGGCACTCCGGGTATCCCAGGCACCCCAGGTAGCAGAGGACCTCCCGGTCCCCCTGGCATGTGTGACCCCTCAGACTGCTTTAGGCCTCAGCCCCTTTACGTAGTGAGCGGGAAAAAACCCATCAGCGTTAAGGGCCCGTGAACCTGAGAGAAACCTTCATCCattagcatcatcatcatcatcatcatcatctatgtcatcttcttcatcatcgtcatcgAGAGAGAGCGGATCTGATAAGCTTGAAGAGACTCAGATGTCGACGTTATGATCCACATTCCTGACAGCAGCATGGAGACTCTTTGACCAGTTCATTTCTGTGACTTGTACATACACGAGAATAAACATTTAGACaggcattttctatttttttttttttttaataatgcaagATGTGAATACGTGGTTAGGATTACCGATACAGTGAACAACAGATGGTTTAACACTTACATCCCAGACTTAGCGAAGACACTCCCGAGCTGGAACCCTGAGCCTGTCTTAAATGCAGTGGAAAAGTAGAACGGGGTGTGTGGCAGTTTTGACCAACCTACAAAAAAGTGCCTTAGATTTAACCTGTAACTTTTTTAACAATGTGTTCGTGGATAATGTCAGTAAAAGTACCAGAAGCTAAGCTACAACACTTTGGAGCAACGATTGGaatactgaaataaacattCTCCACCAccaataaaacactgaatgtcTTGATATTCTTTAAACACAGAACTGACCATTTATTCAGTAGAGAATTTCACGAAAAATTATTTTGTAGTGCTTTTAGAAGAGGTATTgaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169408 lncRNA upstream 76899 3926059 ~ 3933020 (+) True G142999
TU169297 lncRNA upstream 385631 3617176 ~ 3624288 (+) False G142908
TU169296 lncRNA upstream 389257 3617176 ~ 3620662 (+) True G142908
TU168847 lncRNA upstream 574354 3415522 ~ 3435565 (+) False G142575
TU169457 lncRNA downstream 21710 4068358 ~ 4069576 (+) True G143048
TU169540 lncRNA downstream 79942 4126590 ~ 4126795 (+) True G143125
TU169600 lncRNA downstream 207784 4254432 ~ 4254668 (+) True G143185
TU169601 lncRNA downstream 208076 4254724 ~ 4254951 (+) True G143186
TU169735 lncRNA downstream 444449 4491097 ~ 4543484 (+) True G143312
XM_026909875.2 mRNA upstream 193296 3702496 ~ 3816623 (+) True khdrbs3
XM_026909876.2 mRNA upstream 193296 3702496 ~ 3816623 (+) False khdrbs3
XM_026909877.2 mRNA upstream 193296 3751967 ~ 3816623 (+) False khdrbs3
XM_034307220.1 mRNA upstream 613883 3384180 ~ 3396036 (+) False LOC113523845
XM_026909906.2 mRNA upstream 613883 3388263 ~ 3396036 (+) False LOC113523845
XM_034307648.1 mRNA downstream 421474 4468122 ~ 4479494 (+) True rragcb
XM_026947326.2 mRNA downstream 438185 4484833 ~ 4508842 (+) True fhl3b
XM_026947325.2 mRNA downstream 478967 4525615 ~ 4530986 (+) False stpg1
XM_034307695.1 mRNA downstream 479321 4525969 ~ 4530986 (+) True stpg1
XM_026947314.2 mRNA downstream 490848 4537496 ~ 4593588 (+) True map7d1b
TU168849 other upstream 547748 3397670 ~ 3462171 (+) False G142576
TU168853 other upstream 613852 3388253 ~ 3396067 (+) True LOC113523845
XR_003402471.1 other upstream 641581 3368205 ~ 3368338 (+) True LOC113523858
XR_003402472.2 other upstream 643661 3366125 ~ 3366258 (+) True LOC113523859
XR_003402470.1 other upstream 645571 3364215 ~ 3364348 (+) True LOC113523857
TU169682 other downstream 438195 4484843 ~ 4505055 (+) False fhl3b
TU169683 other downstream 438235 4484883 ~ 4505055 (+) False fhl3b
TU170101 other downstream 1694310 5740958 ~ 5747944 (+) False gpx3
TU170815 other downstream 2540563 6587211 ~ 6593605 (+) True LOC113547098
TU170969 other downstream 2733341 6779989 ~ 6798904 (+) False G144353

Expression Profile