RNA id: XM_034307362.1


Basic Information

Item Value
RNA id XM_034307362.1
length 2670
RNA type mRNA
GC content 0.45
exon number 20
gene id LOC113529695
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15219970 ~ 15228985 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCACGTTTGTAGGTGACGTACTAGCTTACTATATAGAACATCCAAATAGTATGAAGGCGTAGTATGTGGACAGAGTACTTATGGGCTGCTTATGGCTTATTGgGCTCAGTGTTAGCTGTGACTCTGCAAGGACTTCCTGCCACGGTGAGCCTGCAAGAGAACAGTCCAGCTGGAACTGAAGTCTTCTGCTTTAAGATTGGGCTTTCCACAGGCACAAGTGTGGTCTCCAGATTCCCTCTGCTACTCAACTCTAATCCCCTCACTAATGATTTCATGGTGTATATGGTGAATTCAACACATGCCAAGGTAACTGTCACAGGCTCCCCAGATCTGGACTTTGAGAGTTCGTCTAATCATTTCATTCTGCGGCTTCTTGTGGTGGACAACAGTGCAGGCTTTGAGCTGCAGACACTCACTGTTATACTAACGGATGTGGATGAGCCCCCAGTTTTCTTGGATGAAACCTCACTCCTCTACATAGTGGAGAAGTCTCCACCAAGCTTAATCTATCAACCAGCTGTCTTTGACCCTGAAAATAGACCTCTAACTTTCGCTTTGAGCCCTCTGAATGCTGCTTTCAGCATCGATCACAGCAAAGGCTTCCTTTTCACTGTCAAACAGCTTGATTATCTAACTGATCCCAGGCGATATTACTTTAATATGTCAGTGAATGATGGGAATAACACCTCTACCAAACCTTTGTTCATCAACCTAATTAATCTCAATGATGACAAACCATACTTCTTAAACACCATTACATCTTTTACTATCCCAGAAGAGTTGAGCCCGGGGCATATGATGGCTAACATTACTGCAGTTGTTCCCAGTGACTCACTTTATAGCAGTTTCATCTTCTACACCATAAGTGACAACAATTATCTTGCCATTCACAAATACACTGGATTGGTCACGATTGCAAACAGGATGGATCGAGACTCTGTACCACTGAGGGACAGTCCAACCATCACAGTGACTGTAACAGCCAGCTTTAGTCCCCCTGGACCACCACTAATCAACACAATCAACATCACTGTTACTGTCCAAGACATTAATGACAACCCTCCCATTTGCTTTGCTGACAACCAGAGGAGAGAGGTGCCAGAGACGGAGGTGAAGGGAGCCCTCATTGCTACCATCATGTGCACTGATAACGATGTCCTGCCTTTATTCAAAGAGTTTATCTTTACTGGTCTCTCCTGCCTGGGTTGCAGTCAGCTGTTTGCCCTGAAAACCAATCAGATTATACTGAATGGTAGTTTGGACTATGAAGATCCTGGCAATCTTTACACAGGCAATGGATACAGCCTTTTGATTACAGCAGTagataaaaatgacaataatttaAAAGGAGATGCCTTTGTTTATGTGACCGTGACCCCAGTTAACGAGTTTGCACCTATGTTTCATCCTGTGTCTTATTTTTATACTATTTCTGAACTTCTTGGAAGTGGTGTTGTGATTGGCTCAGTCAATGCCACTGATATGGATTTGCCTCCAACATTATTGCGATACTCTATAGTGTCcggtggtggtgctggaggaCTAAGGAATATTTTCCACTTGGACCCTATACAGGGCCGGATAACCCTGCTCACTCACCCTGACTATgaggacacacagacacatgtgCTAATCATCAGAGTGGTGGATGGAGATCCCATCAGGCCACGCTCTGCCACAACCACAgttgttattaatgtcacaGAGGCTAATGATGAGCCTCCGGTGTGTGGACCCAATAACACAAACCTAGTAGTTCCAGTAGATCTGCGTTTAGGTACAGCTGTCCAAGGTTTCACCCTTTCCTGCACAGACAGAGACTCTCCACCCACTTCATTCATCTACTCCATCTCAGGAGCCAGCAATGTGAACAACCATTTTGGCTTTTCACCAAGTGCAGGCTCAAACATGAGCCGTCTGATTTTGGTAGCACCATTTGGCTTCAGCAGCGGGCTGGACACACAGTGGAGCTACAGACTCACAGCACTGATTTCCGATGCCAACCTTCGTTCAGGGTATGACAGTGCCAGAGCCCCTCCTCAGACTGGCACTGTCATTATCAATGTGCGAGTAGTTGATCCCCAGATCACCACTGTCATCACCACAACGACTCCCAGAGTCACATATATCAATGTGGAGACGAATACATTCAATACAGGTGACTGGTATGTGTGGTTTGTCCTTGCTCTGGGGAGTTTTCTTCTCCTGCTTATGTTGGCTTACCTGCTGTATAAGTCCTGCATGTACTTCTCTACTAAAGACTGCCACTGCTGTGAGCCCACAAGAATAGATGGCAAAGAGGAACTCATCACGGACAGAGGATCACCCATGCAAGAGGTATTAATGGAGGTGACAAAGGTCAACACTGTGTTTGATAGAGAGGAAGTAGATCCTGTTACAAAGAGAGTGTACGAGTACAATAGTAAATCAGGTGCTCGACGCTGGAAGGATGCCATCATTGTATGCGATTCTGCTCCAATCCAGCCAGAGTCTAGCACTCTGGTCATCTCGGACAACACAGCTAATGCACAGTCATCACCAAGATTTCCAGATGACAACCAAAAACCTACCATTTCCAGTGCTCATTGAGAGTTTATTGGAAAAATAGAATAATGGAATAATATTTgttctgttaaagaaaaattaaaatgacatacTAAGTTCTGAGCA

Function

GO: NA

KEGG:

id description
K16503 CDHR3, CDH28; cadherin-related family member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176384 lncRNA downstream 81963 15136126 ~ 15138007 (-) True G148919
TU176385 lncRNA downstream 87473 15130776 ~ 15132497 (-) True G148920
TU176392 lncRNA downstream 91464 15127466 ~ 15128506 (-) True G148926
TU176393 lncRNA downstream 91915 15127232 ~ 15128055 (-) False G148926
TU176480 lncRNA upstream 102222 15331207 ~ 15331432 (-) True G148992
TU176554 lncRNA upstream 148218 15377203 ~ 15377406 (-) True G149057
TU176797 lncRNA upstream 483312 15712297 ~ 15713018 (-) False LOC113529470
TU176862 lncRNA upstream 496266 15725251 ~ 15725901 (-) True G149301
TU176867 lncRNA upstream 522174 15751159 ~ 15752470 (-) True G149305
XM_026919772.2 mRNA downstream 2913 15200015 ~ 15217057 (-) True LOC113530066
XM_026918707.2 mRNA downstream 20300 15194318 ~ 15199670 (-) True hbp1
XM_026919509.2 mRNA downstream 49263 15164565 ~ 15170707 (-) True gpr22b
XM_026919675.2 mRNA downstream 70688 15145412 ~ 15149282 (-) True golt1bb
XM_026920008.2 mRNA downstream 102192 15116022 ~ 15117778 (-) True pthlhb
XM_026918831.2 mRNA upstream 52873 15281858 ~ 15285227 (-) True irx5b
XM_026919258.2 mRNA upstream 156103 15385088 ~ 15405178 (-) False rpgrip1l
XM_026919255.2 mRNA upstream 156104 15385089 ~ 15405178 (-) True rpgrip1l
XM_026918870.2 mRNA upstream 219757 15448742 ~ 15452712 (-) True hsd17b2
XM_026919371.2 mRNA upstream 225195 15454180 ~ 15465781 (-) True gpia
TU176301 other downstream 131954 15086123 ~ 15088016 (-) False dynlrb2
TU176092 other downstream 407265 14810004 ~ 14812705 (-) True G148647
TU175596 other downstream 1387081 13825897 ~ 13832889 (-) False LOC113529512
trnar-acg_1 other downstream 1429425 13790473 ~ 13790545 (-) False trnar-acg_1
trnae-cuc_22 other downstream 1766498 13453401 ~ 13453472 (-) True trnae-cuc_22
XR_004578830.1 other upstream 761095 15990080 ~ 15992094 (-) False islr2
XR_003403120.2 other upstream 1524191 16753176 ~ 16753281 (-) True LOC113530224
TU177725 other upstream 1824381 17053366 ~ 17058906 (-) True LOC113529460
XR_003403060.1 other upstream 2525399 17754384 ~ 17760039 (-) True LOC113529452
XR_003403059.2 other upstream 2977168 18206153 ~ 18214487 (-) False fnbp4

Expression Profile