RNA id: XM_034307383.1


Basic Information

Item Value
RNA id XM_034307383.1
length 8029
RNA type mRNA
GC content 0.49
exon number 22
gene id syngap1a
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 6120616 ~ 6247705 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctctctctctctgtgccccctctctctctccctctgtctctctctctctctctctctctccttcactttaCTGCTCGCGCGCATCgcaattatactacatttagTAGTTGGGCATCTTCCCCCACTCCTCCGCCGACAGTATGGATTAAACTGAGGTGTATTTGGTCGCCATAGCTTAGCCACTCCGCGGACATGGGCATCTCTACCGGCCGCCTACATCCTCACACGGCGAGCCGCTGTGGCTTCTTCTAGCCCGGATGAGGCTGGTTACAAAGTACCGTCAGATTAGCCGGTGAGGCGGGTGCGCGCGTTCGATGCCGTTGGATCATGTCCTATGTGTCTTCACAAGATGGAAGGTGTGTGTCTCCGTGTTCCCGGCCTCACACTCCTCTGAATGGCCACGCCCACGACTCCCCCGGCTGGAGCCGCCCGCTCCGCGTCCGAGACGGAGACCAGTTCTACATGCTGGACCAAGAAGAGGTTCATCCTCTTCTTATGAGCGAACGGCGCCCTGTGTCTCACCGCACCAAGCTGCTCCGCAGGACCGTCTCCGTACCTGCCGATAGCAGACCCCACCCCGAATCAGAGCACGCTCGTGCTCGCAGAAAGAGCTTTGCCACAGTGAGGCAGAGAAGCATGGAAACTCCGCCCACTGCCCCTCCCCAGCAATTTCGTCAGTCGagTTTTCTTAGCCGCCGTCTGAAAAGCTCAATTAAGCGAGCCAAGAGCCAGCCCAAACTTGATCGCACCGGAAGCTTCCGCCACATGATTCTCCCACGATTCCGCAGTGCTGACCAGGAAAGAACACGTCTGATGCAGAGCTTCAAGGAGTCTCATTCCCACGAGTCTTTGCTGTCGCCAAGCAGCGCGGCCGAGGCGCTGGACCTCACGCTGGACGAGGATGCCATCATCAAGCCCGTCCACTCCAGCATCCTCGGCCAGGAGTACTGCTTTgagGTAACAACAGCCTCAGGCACAAAGTGTTTTGCCTGTCGATCGGCTGCTGAGCGGGACAAGTGGATCGAGAACCTGCAGCGAGCCGTTAAACCCAACAAGGATAACAGTCGTCGGGTGGACAATGTTCTTAAATTGTGGATTATCGAGGCGCGGGATCTTCCACCTAAAAAGCGCTACTACTGCGAGTTGTGTCTGGATGACATGCTGTACGCGCGCACCACCAGCAAGCCTCGAACAGACACAGTGTTCTGGGGTGAGCACTTTGAGTTCAACAACCTCCCTGCTATCCGGAGCCTGCGCCTGCACCTCTACAAGGAGACAGACAAGAAGCGACGCAAGGAGAAAAGCACATATCTTGGCTTGGTCAGCATTCCCATCTCGAGCATCACAGGCCGTCAGTTTGTGGAGCAATGGTACCCAGTCATCCAGCCCAGTGTCCTTGCAAAGGGTGGTGGTGTGGGCAGTGGAAAGGTCATTAATGCCTCACTGAGGCTCAAATCACGCTACCAGACTATGAGTATCCTGCCCATGGAGCTGTATAAGGAGTTTGCAGAGTATGTGACGAATAATTACCGCACTCTGTGTGCTGTTCTGGAGCCACTCTTGAGTGTGAAGAGCAAGGAGGAAGTGGCCTGTGCCCTGGTGCACATTCTACAGAGCACCGGCAAGGCCAAGGATTTTCTCTCGGACATGGCGTTGAGTGAGGTGGATCGTTTCATAGATAGAGAGCATCTGATCTTCAGGGAGAACACACTGGCGACCAAAGCCATAGAGGAGTACCTCAAACTTGTTGGACATCGCTACCTTAAAGACACCATTGgtgagttTATTCGTGCACTGTATGAGTCAGAGGAAAACTGTGAGGTGGACCCCATGCGAACCCCACCTTCCATGCTCCCAGACCACCAGGCTAACCTACGCATGTGCTGTGAACTTGCACTCTGCAAGATCATCAACTCCCATTGTGTTTTCCCCCGGGAACTTAAGGAAGTATTTGCATCGTGGCGTGTTCGTTGTGCTGAAAGAGGTCGTGAGGACATTGCAGATCGGCTCATCAGTTCCTCACTGTTCCTGCGCTTCCTGTGCCCAGCCATCATGTCTCCATCACTGTTTAACCTGACGCAGGAGTACCCATCTGAGCGCACATCCCGAACCCTCACGCTCATCGCCAAGGTGGTGCAGAGCCTGGCCAGCTTCTCCAAGTTTAGTGGTAAAGAGGATCATATGATGTTTATGAATGAGTTCCTGGAGATGGAGTGGGGATCCATGCAGCAGTTCCTCTATGAGATCAGTAATGTGGACTGTGGTAGTAACGCGGGGGCGTTTGAGGGTTACATCGACCTCGGCCGAGAGCTCTCTATCCTGCACAGCCTGCTCTGGGAAGTCATGGCCCAACTGAGCAAGGATGCTATCTTGAAGCTAGGGCCCTTGCCACGTTTGCTGAACGACATCAGCGTCGCTCTGAGGAACCCACAGCTGCACCGGCAGGCGAGTCACCAGCCACCCGAACGACACCTCGCACGCCCGCCCTACAGCCGCCCAGCCACTAATGACTTCCAGAGCCTGATGATGAGGGAGCAGAACAGtTCTATAGATATCTCTCGTCTACCATCTCCTACCTCCGGAGGCGGAGCTCTCTCTCACCCGGGCATGGCTGGCTTCGACAGAGATCACCGTGGCAACAAAGATGTGTTCTATGTGGCACGCCCACCCTTAGCCCGCTCAAGCCCCGCCTACTgcaccagcagctctgacatcaCTGAGCCAGACCCtaagGTGCTGAGTGTGAATAAGAGTGTATCTATGATGGACCTGCAGGACTCTCGCATCAACAGCATTTCCAACCTGCACTCTGTAAACGACATGCTGAACTCGTCACAGGGCTCCATCGCTGGACTGGGCAGTTTCGGTGGCGCTCCTCTGCGGCTCGGGGGCATGAGGTTCAGCCATTCGGGCGGCTTGGCCTCGGACTCGCTctcccagcagcagcagcatgcgGCAGCTGCCATGCACGTGCCGCTCTCCTTCCAGAACCCGCTGTTCCACTTGGCTTCGGATGGGCCTCAGTACCAGGCCCACCCCATGCCTCACACGCCCCACCGCTTCCTGCTCGCCCCGGAGCCTGAGAACGGGCACGCAGGCTTCGGTGTGCCAGCCTTCGGCCATGGTGGGTTCTCTCGCAGTGAGGATCTCTCAGCCCTGCGCACGCAGAACAGCCTGGTGCAGCCCAGCATTGTCCACTCGCACAGCTACAGTGACGACTACACCCGCCACAACCAGGCTGACTACGCACGCCGGCAGCTATCACTGCAGGTGCAGgAGAATCTCCATCAGCAGGTATTAATGGGCATGGCCCCTCAGACTGCTACCGGCACCGGAACACCCGCCTCAGTTGCAACGCCCCCAGCCACCATGCACCCTGTCCGTCAGGCTTCTATGGCTCCTCCCCCTACACAGCGTATTAAGCCTCAGCCTTCCCACCAGCTGTCAGTCAGCTCAGCTGCTAACTCCACCCCACCCAAGGTCCGACCCCAGAGCGGAAACCTCCTTCAGTCACCTGAGTCGAGTTTTGGAGCAAGGCCGTTGCCACGGCAGCAGCTGTCAGTTAAGGACAGCCCCGCCCCTGGTCTCCCTCACCAGTCCAGCACAGCCAGTGATAGCCAGCCACCACAGGGGGGTGCTAATGAGAACACAGAGAATGCACAGAGTGATACTCCTGCTAAAACTGCTCCACAATCCAACCAACAGCACCTACTAAAACCAACTACTAACAAGCAGGGCTCTAAGTCTCCCTCCACACTGAACCCTCCGACCCCTGCATCCGAGCGGACAGTCGCCTGGGTGTCCAACATGCCGCACCTGTCAGCTGACATCGAGAGTCTGCGTGTGGACAGAGAGGACCTGAAACTGAAGGAGCACTCTAAGAGCATGGATGAGTCTCGGCTGGACCGGgtgCGTGAGTATGAGGAGGAGATCCACTCCCTGAAGGAGCGGCTGATGATGTCCCACCGTAAGCTGGAGGAGTATGAACGCAGGCTGCACTCCCAAGAGCAGCAGACCAACAAGATCCTGCTGCAGTACCAGAGCCGTCTGGACGACAGCGAGAGGAGACTGAGGCAGCAGCAGCTGGAGAAAGACTCGCAGATCAAAGGCATCATCAGCAGGCTGATGGCGGTGGAGGATGAGTTGAGAGGCAGTGGCGTTTCTGACCTCAAATCCCGAATATTTACAGGAGAGGATGATCCATATTCCTCTCTGGGTTCGGTTGAGCAAAGCATGGTTCCAGGAGGGGAGGGGGTTCTTCCGCTGAACCCCATCTCGGCTCTCTCCTCCACAACCAGCTCCCCTTGGAATGGAGCTCTCCCTCCCCTGCCCCCACACCTGCACATCAGCCAGAACGGTGATCTACGTGGCAATACCGGCTTCCCCGGCGCAGCCATCGCTACAGCAGCTGGGGCCGCAGCCTGCTGGGCCACGCAGGGAGGGAGGCTGGGCTAGTCATGTGGCCTTTGAACACTGGGAGAGCTTTGTGCTGTGCAAATACATGCGCATTGTTGCTAGCAAAAATATTGAGTCTTCACATCCCAGCATGAGTCTGTGGCTGAAGAATCTGTAGTCAGCTTAACAGccatctgtccatttttttcGCTTTTATCTGTCCATTAAAGGGAACATCAGCCAAAATtgctaatgaaatgaaaatcaaCTGAATTTTAGCAATTTTAGCTGAGCTTTCTTTGAGTTTCTTAGCAAGGAAAGTCCCTCTTTAGATAGGGGgctgtgtaatagtgtgtgagGATTAGGTTCTGTCAGAGCTCTATTGTTCTCTTAAGCTGCGATTAATGTGCTATTGGCTTAAGCATTTGGTAtatagacatgtttttttttaaatatataaacatttagcCTATTGTTAGTTTATTTGAAAGTTTCTAAAATCTTAAGCAGAATGACTCATAATTGGCTATAAATGCCTAAAGCATATATTAATGAGACACTATTTTTAATGTCACAAGGGCTGTGAAAACAAAAGTGTGAAGATGTGTTTACATTTCCATGAATCAAAGAACTAATTTCTATATCTATGACTTGTAGATTTGCTGTTAGTGGTTCTAGTAGAGAGATTTTCAAGAGGTGGATATTTTTCCATGAGAATTAGTGGTGTACTTCAACAGCTGAGATATGAGTCATttcgtttttctttttaactatCAATCTGAatcgtttgtgtgtgtctttatgtgACTGCCATCTATCACTCATACCATTCCCATGCCACTTGctactgtaaatgtgtgtagcTTATCTGAATGTGTTTTCATATGTGGatgatatattaattattataaactaAGGTGTGAATGCAATGACAGGGACTTTATAAATGCCAACCAAGATTCCTGGACAATTAACCTGTCAATCAAAGGCTAAGTGGACTCTCATTGGACACTAAGCCACCTGCTACCCTCCTGCGCtcactttgtctttctctcccttagCCGATCTATGGTGGGCACACCGGAACATGATTGGACCACAGCAGCGCGAAAGGATATGTGACTGGACCCACGCCAGTCCAGGAACCTctcttgtttctgattggttgagagaggagagagaaagaggaagagcctgagaaaaaagaacaacaaaaaaaaaacatcgctCTGACACGTCAAACCccaaaaagcacacaaaatcACATACACAAGAGCACATTCTTTATGTCTCTCtacttctttctctccctctcttttcctccctgAGCCAAAATAACGACAATCACCTCTTTTTTATGTAGTGGATTGACAAATTAGCTACTCGGTGCTGtttattctattatttattcGGCCATTATTACTTTAGGATCTTTGGTACAAATTAAAGTTACAAACAGAGGGACCTGATTCATGTATCCTCTTTTTTTGCCCATAGTACACCTCAGACTTTCTCTCTatgtctttccctctctcagcAGGCGTGTTTGTTGTATTCAGCATGATGGCTGTAGAGGGGCTGTGTtggtctttgtgtgtgtgtgcggttaTGGTGTGTATTACCAACTCCATAGCCCACAAGCCTCCAAGCTCTAATAATGACTCTTAATTTTTgttcttgtaattttttttttcctataatgaGCCTTTTCAATCTTTTTATGGAGGTGTGGTCTTTTCTGAGCCAATCAGATGTCGCCATACTGCTCAGAAAGCCCTTCCTGTGCCGCGCAGTGGGCGGCGCCTCTTCTCTGTGCCTAAAGAGCTCTATACAAAACAGGGGAAATGAAAAAAACTTCATCGACAGGAGCGCACAGGACACTCCAATTTTTCAAGCTGTGGAGTTTGAAAGAGTATGATGTTTGATTAATATTGTCTCTGTTTGGACTTTGCTGCTTTAAGGACTTTTAAGGATCAGCATCCCTTCATCATCTCATCCAGTCGATGGGACGGAAATGACACAAGCGAAGATACAGCgccaccgtgtgtgtgtgcgcgtctaAGAGCAGAAACAACCTGCTTTAGTGAGCAAGACCGTGTGTAACATCCGTCTGCACATGAACGATGGGACGTATTCTGCGTACAGGTGCTTCTGGGCATCGATGCAAATGGATTTGTCTTTTCCTTTGTGAgcgtgtgcatgcatgtgcGTGTGAACTAGAGAAATAGGGAATAGGAACGGGATCAGAAGGAGAACACCAAGGATGACCATGGTTTCATCAGCTAACGGCAGGGACCCGCCTTGAGAGGAAACTGCAGTAGAGACAAAAAATCTATATGATCTAGTATTTATAAAGTCTAGCTTTAGTATTTATAACTCTAGACCTATAGCCCATCTTTATTCTATTAGACTTTATTTAAGCACAAATATACCCATTACCAATGTACTATATTGTGGTAATGTATTATACTACTCTCCTAAAGCATGGagacacgcacatacacacacttatacacacactcacattgaTCATAGAAGGAAGTAGTAGCATCATACCTCATTCGGTCCTACTGTTATCTTCTTTCCATTAGGCGCACCGCATCTATCAATCCGACGCTTCTGTTCGGTTTTCCTCGCCGTTCGATTGGAGTTTTTCTGAGATCGGTAGCTGATTTCTTTCGCTTGTGAGCTTCAGTTGGATTTGATGTACATAAGAGCTGAGGATTCAAGACCTGTTGATTTctacagttttattcattttaccaagtcctattgtttttttctgattctTCCTTGATGTTCGATAGatgattacacacatatacaccatTAGTTGGTTTTGCTGGTAGGTTTTTAGTcacttgctttttatttattatgattcttcttcttcttattattatttttctgtggtGGTTGAAAGTATTGATAACTTATTATGTCTGCACTtcagatattatttatttttcaaaaaaaaaaaaaaaatctaatcgtGCCCCGTGCCTAACTGTTCTGGTTCTGAAACTTTGGTGAGAAAGTTAGATGGCTCTGCTTGTTCGCCGCCATGGATCAGaaccagtaataaatgaaatatgaagCAGAACCTTACAATACTCTAGTCACCTTTTGTGTATAAAAGTCCTCCTGAGAAAGATTGTGCTGGTGAAACGTTTTCTCCCATCGTGTAGCgctatatttgttttttagagTCATGAGATTTTGTATCTAATCTTCAGAATGAAATGCCCAGAGCGGGTCTACTCCTACCCTTAAACTTAGCCATAGACATGGACAAGCCATACACACCCTGTCCTTCTCACGGGCTTTAGGAGCGTaggaatgtatatatttctatcGAACCACAGAAACACGTACCGGCGAAGGAAAGGCTCAGTGTTTAACAATGTGGGACACCTCAGCATATGGAGAAATGTTGTGAATGTTAATATTGTTAAGAAGACAATTATTCTATTCAAATATGACTATTATTGTAATTATCATTGCTTTCATTTTCTTGATGATATGATTATTGATTGATCAgaaatttctttcattttgtgaaTATGAGTTTACTATTATTCCAGAAGTTTAAATAATTggacaaattaataaatagatatatGCTAacctttaa

Function

GO:

id name namespace
GO:0046580 negative regulation of Ras protein signal transduction biological_process
GO:0031235 intrinsic component of the cytoplasmic side of the plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K17631 SYNGAP, RASA5; Ras/Rap GTPase-activating protein SynGAP

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170347 lncRNA upstream 136238 5978102 ~ 5984378 (+) True G143832
TU170268 lncRNA upstream 184287 5932581 ~ 5936329 (+) True G143772
TU170260 lncRNA upstream 196864 5922811 ~ 5923752 (+) True G143766
TU170248 lncRNA upstream 207875 5910983 ~ 5912741 (+) True G143757
TU170524 lncRNA downstream 108612 6356317 ~ 6357920 (+) True G143987
XR_003404779.2 lncRNA downstream 174431 6422136 ~ 6428434 (+) True LOC113547099
TU170785 lncRNA downstream 296667 6544372 ~ 6544916 (+) True G144221
TU170834 lncRNA downstream 380646 6628351 ~ 6684107 (+) True G144256
TU170960 lncRNA downstream 535633 6783338 ~ 6830066 (+) False G144353
XM_026947306.2 mRNA upstream 3079 6108863 ~ 6117537 (+) True scn1bb
XM_026947307.2 mRNA upstream 3079 6108863 ~ 6117537 (+) False scn1bb
XM_026947308.2 mRNA upstream 3079 6108863 ~ 6117537 (+) False scn1bb
XM_026947370.2 mRNA upstream 34537 6077917 ~ 6086079 (+) True lingo4a
XM_026947371.2 mRNA upstream 34537 6077918 ~ 6086079 (+) False lingo4a
XM_026947309.2 mRNA downstream 50061 6297766 ~ 6302565 (+) True ndufb9
XM_026947395.2 mRNA downstream 157041 6404746 ~ 6415386 (+) True proza
XM_026947313.2 mRNA downstream 339662 6587367 ~ 6593560 (+) False LOC113547098
XM_026947355.2 mRNA downstream 358116 6605821 ~ 6679326 (+) True LOC113547127
XM_034307439.1 mRNA downstream 431779 6679484 ~ 6680169 (+) True LOC117598051
TU170101 other upstream 372672 5740958 ~ 5747944 (+) False gpx3
TU169682 other upstream 1615561 4484843 ~ 4505055 (+) False fhl3b
TU169683 other upstream 1615561 4484883 ~ 4505055 (+) False fhl3b
TU168849 other upstream 2658445 3397670 ~ 3462171 (+) False G142576
TU168853 other upstream 2724549 3388253 ~ 3396067 (+) True LOC113523845
TU170815 other downstream 339506 6587211 ~ 6593605 (+) True LOC113547098
TU170969 other downstream 532284 6779989 ~ 6798904 (+) False G144353
LOC113547145 other downstream 535811 6783516 ~ 6785437 (+) True LOC113547145
TU170957 other downstream 549104 6796809 ~ 6870576 (+) True G144353
LOC117598156 other downstream 549267 6796972 ~ 6798904 (+) True LOC117598156

Expression Profile