RNA id: XM_034307426.1


Basic Information

Item Value
RNA id XM_034307426.1
length 3003
RNA type mRNA
GC content 0.41
exon number 8
gene id ppt2b
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 3346572 ~ 3356643 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGCGCACCTGAAACCGGAACAAACAAATCCGGATGCAAATGATGTTGTTCGAAAGCGGAGCAGTGTCGGTGTAGAagtgtttatttcagtttctgTGGGGCAGATATCTCCAGCAGTAGAGAGAACCAGATGAAGTGAAGATGGTGGAGAGGAACAGGGTTTATTTGTGATATTTCTTCCCTCCagctgaaagacagaaagcagACAGAGTGCAGGAGGTGTTTTAAAGGAGAAAGAGACAATCATCTTCAGATATTTTTAATCACAAGTCAGCTGGTTTTAGTTGTAGATCTCAGCATGAAGAGGCTGGCTTTCAGGGGGAAGTGTGCTCACAGCTCAGTGTTAGTGTGCTGCTTACtcctgtgcagtgtgtgtgtgtgtgtgttggggtataaacctgtgattgttATCCATGGACTGTTTGACACCTCTGCAGACTTCATCAACCTCAAAAGATACATCAATCAGtctcaccCCGGGACGAACGTGTCGGTGATAGACCTGTTTGACCGCACAGCCAGTCTGGAGCCGTTGTGGAAGCAGGTGGAGGGATTTAAGGAGGCCATTTATCCCATCATGCAGAACGCTGCAGACGGAGTTCACCTCCTCTGTTACtcacaaggaGGGTTGGTATGTCGAGGAATCCTGTCTACACTGAATGACCACAATGTTCactccttcatctctctctcctcccctcaGGCTGGACAGTACGGAGacaCAGACTATCTGAAGTACTTCTTCCCCGAGTTCGTCAAGTCCAACCTCTATCACCTGTGTTACACCGCTGTGGGCCAGAGGATCTCCATCTGCAACTACTGGAACGACCCTCATCACAGAGACATGTACATGAACACCAGTGATTATCTCGCACCACTGAACAACGAGAGGCCACATCCCGAATCCGCAGTGTGGAAACAGAACTTCCTGCGTATTAAAAAGCTCGTGCTGATTGGTGGACCAGACGATGGTGTCATCATGCCGTGGCAGTCGAGTCAGTTTGGTTTTTATGATGAAAATGAGACGGTCGTGGAGATGAAATCTCAGGAAatgttTCTGAGGGACTCGTTCGGTCTGAAGTCTCTGTACGCTAGAGGAGATCTGGAGCTGTGTTCAGTGGCCGGGGTACCGCACATCTACTGGCACTCCAATGAAACCGTATACAAGAGCTGCATCGATAAATggctcacataaacacacacagtctcacacacacacacacacacacacactgatatagaGCCTATTTTTACACACAGGATTGACACTTTTCTATCAGCTCCTACGCTAAACAAATGATCATCAGCTGCGTTTGTTCCAGATCAGTGTTGCTCCGAGTCACAGCAGCACTTTATCTCTTTTAAccgctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgacacACACGGTTCATCGCTCAGGCCTGCTCAGCTTTTTACTGaagcttaaacacacacacattgtaaatacgttttattcatttatacactCGCAAAGCACAACACAATGCAAATCAGTGCCTCAAGAACGTTTCTGATCACAAAAGAGTtactgataaaataaataaaaagggggGGCGGGGTTTTTATTTTGTACGTCCTGTTTCTGGGTGAATAGGGGCGGGGCTTAAGCTAAATTTAATCACAAACTTGACTTTTTTAATGATCTTCAGCTCATCATACCACTTAGCATAAAACACTgcaacattagctaagctacCAGAACACAACACAGCGATCAAATTGAatttaagccccgccccctttttaCTTTCTGTCACTCAAAATCAGGAtgtgagttttgtttttaagcCTTTATTTTAACTCCACCTCACTtccttaattttattttattttatttatttttaaaggagCAATACAAGTTAAAATGCAAATCTCAAACGTTACATATTGCTCCTTTAATCTCCCACAACATGAAGGAATTGTGGGTATTGTAGTCCGGTTGCAGTAAGCATCATTgccttatattttttttacatttgtaccAGTTGTATCCTTTAACTGTGGTTATTGGACTACATGGAATGACATCGTATAAAAGCGGTTACGTTAAGTCCGTCCCACTATCGCTATCTGTTTTTGAAGCAGCAATAAGTAAAATTGTGCCACGTGTAGAAAAAATTCTTTTGGAACCGGACGTTCTTGCACAATGTTTTGAAAATCGTGGTACTAGAATGTTGCATATTGCTCCTTTAATACCCTAAAACAAggaggaattgtgggtaatgtagttaAGTTGCAGTAGAAATGGTTGCCttatgttttaatacatttgtaCAGATTTTATTCTTTAACTGTGTTTTATTAGACTTCATGTAGCTATACGATGAGGACGGGGAATGAATGtaaaagcctgaaaaaaaagggaatagaTGATAAAAAGATGAAGTAGGACTGACAGGAAGAgggatatatatacatagatgcTCAGGTTTACCTACTAGTTTTAAACATTTGTCTACTTGATTTAGTATTAAAGCAGCAATCAGTAAAATTGACAACTATTTATCACTTAGCAGTTGTAAGTGTAGGCTGTTGGCTGAGAATAAGACATTTGAGAGTTAATTTCTACAATATTACAGTAGTATAAAAACTGTGTAACACTATTAAATGTTGCATATTGCTCCTTTAACAGCCTGTAACAGGGAAGTATTGTGGGTATTTAGGTATGCGTTGATAGTAAAGTTATATGTTATAGTAGTTGTTTAAGGTTGTATCAGTGTATGATATTATAATGATGTAGCAGACAGTGATGTTATCTTATCttttgaaactgaaaaaaaaaatgaagcatagGATTGTTTTCTCAGAGACAGACTCGTCCTTCAAATTTGTCCAGAATAAGGAGCCCGTGTTCACACCGGCAGCGAAGCGTCATAAAAAATTTCACTGATAGCTTGCGATTACAGTGAAAGGAGGCAGAGCAACTGTTGGTGATGTTGGTGAAGTAGGTGGAGcgaaatatgaa

Function

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0008474 palmitoyl-(protein) hydrolase activity molecular_function

KEGG:

id description
K01074 PPT; palmitoyl-protein thioesterase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168817 lncRNA upstream 25404 3312761 ~ 3321168 (+) True G142553
TU168782 lncRNA upstream 116272 3229306 ~ 3230300 (+) True G142524
TU168783 lncRNA upstream 130786 3204461 ~ 3215786 (+) False LOC117598172
XR_004578864.1 lncRNA upstream 130795 3211363 ~ 3215777 (+) True LOC117598172
TU168768 lncRNA upstream 147241 3192111 ~ 3199331 (+) False G142521
TU168839 lncRNA downstream 23078 3379721 ~ 3381739 (+) True G142573
TU168855 lncRNA downstream 34262 3390905 ~ 3391147 (+) True G142580
TU168854 lncRNA downstream 37129 3393772 ~ 3396067 (+) False LOC113523845
TU168850 lncRNA downstream 41027 3397670 ~ 3400823 (+) True G142576
TU168842 lncRNA downstream 58879 3415522 ~ 3434049 (+) False G142575
XM_026909884.2 mRNA upstream 38248 3293799 ~ 3308324 (+) True cratb
XM_034307287.1 mRNA upstream 192726 3146038 ~ 3153846 (+) True slc39a7
XM_026909916.2 mRNA upstream 222858 3118288 ~ 3123714 (+) True rps18
XM_026909910.2 mRNA upstream 285235 3055623 ~ 3061337 (+) True LOC113523850
XM_034307445.1 mRNA upstream 314046 3014082 ~ 3032526 (+) False LOC113523823
XM_026909905.2 mRNA downstream 5757 3362400 ~ 3368547 (+) True rps5
XM_034307220.1 mRNA downstream 27537 3384180 ~ 3396036 (+) False LOC113523845
XM_026909906.2 mRNA downstream 31620 3388263 ~ 3396036 (+) False LOC113523845
XM_026909875.2 mRNA downstream 345853 3702496 ~ 3816623 (+) True khdrbs3
XM_026909876.2 mRNA downstream 345853 3702496 ~ 3816623 (+) False khdrbs3
trnac-gca_12 other upstream 85627 3260874 ~ 3260945 (+) True trnac-gca_12
trnac-gca_11 other upstream 86160 3260341 ~ 3260412 (+) True trnac-gca_11
trnac-gca_10 other upstream 86693 3259808 ~ 3259879 (+) True trnac-gca_10
trnac-gca_9 other upstream 87311 3259190 ~ 3259261 (+) True trnac-gca_9
trnac-gca_8 other upstream 89057 3257444 ~ 3257515 (+) True trnac-gca_8
XR_003402470.1 other downstream 7572 3364215 ~ 3364348 (+) True LOC113523857
XR_003402472.2 other downstream 9482 3366125 ~ 3366258 (+) True LOC113523859
XR_003402471.1 other downstream 11562 3368205 ~ 3368338 (+) True LOC113523858
TU168853 other downstream 31610 3388253 ~ 3396067 (+) True LOC113523845
TU168849 other downstream 41027 3397670 ~ 3462171 (+) False G142576

Expression Profile