RNA id: XM_034307525.1


Basic Information

Item Value
RNA id XM_034307525.1
length 1045
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC113545587
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2184723 ~ 2195601 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGAGTCAGTTAGTGAAATATTCACCATGAGTAACGTCCGGAAGGTCTGCATGTTCATCTCGCTCTCTTTATTCATCACTAATGAAGCTGTCACAGTGCGGAGAGTGTTTGTGCCCAAAGAGCACTTCCTGTTGCTGTCGTGTGATGGCCAATCAGACGTAGAGTGGAGACATGGAGGTACGGGTCTGATGAATGTGAACAGCACAAAGCAGAAATTCTTTTCAGACGGGATGCTGTACATCAGTGACATAGAAACGAGAGACTCGGGCCTGTACTACTGCAACGGCCGACTCATAGCACACGTCACcgtactcacagGTTATgatgctgttgtgtgtgaaggtgGAACTCTGTATCTGCGTTGTACGTTGCCTAAACAGCGCTGGGCTTTTAAACACACCGCCGAATCGAAGAAAGAGTTCATCTCTACACGCTTCAAGAATGGAACAGTCTTAAAGGAACGGCCGGATCCAGACTCacgcttcacacacacttcaaaccATCTACAGATCCTCAACATACAGCGGCTCGACTCAGGGACGTACTTCTGCAGCGGCAAAGACATCGCTGCTGTTACTGTCACATCAGAGAGCAACACACAATGGTGTCCTACTGCAGAAACAACAGAATCGGGAAATAACATTCCTCAGAAGTCTGGAAATGtggtgCTGGTTGCCGTcctcgctctgtgtgtgttagctgtggTTACAGTCGTTCTGCTGTCGGTGATCATGTGTCTGAAGTtcagcagcagaaaaaaaactacagcctCCAATCCAGAGGAAAGTGTGCAGCGTCTGCAGAAGACCCACAGTACCGGTGCTGATGCAGTGACGCTTCAGTCAGCAGaTCGATTGAGGAGCTATAATGATGAGatccaCTATGCGTCACTGGGGAAGCAGAACTGGAGAGCTCGAGGCTGGAATCAGCAAAGCAGGCAGCAAGTCATTTactccacactgctgctgacccctaaacacacacctacacacacaccatagaacacacacacacacacacacacacacacacacacacacaccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168455 lncRNA upstream 38650 2069238 ~ 2146073 (+) False LOC113545687
TU168467 lncRNA upstream 59327 2084785 ~ 2125396 (+) True G142305
TU168464 lncRNA upstream 80794 2054999 ~ 2103929 (+) True G142302
TU168465 lncRNA upstream 101256 2055952 ~ 2083467 (+) False LOC113524920
TU168463 lncRNA upstream 132032 2052458 ~ 2052691 (+) True G142301
XR_004578679.1 lncRNA downstream 24966 2220567 ~ 2226796 (+) True LOC113545551
TU168530 lncRNA downstream 25075 2220676 ~ 2226779 (+) False LOC113545551
TU168532 lncRNA downstream 25075 2220676 ~ 2226779 (+) False LOC113545551
XR_004578870.1 lncRNA downstream 83582 2279183 ~ 2279887 (+) True LOC117598179
XR_004578871.1 lncRNA downstream 83875 2279476 ~ 2279887 (+) False LOC117598179
XM_034307493.1 mRNA upstream 1670 2096979 ~ 2183053 (+) False LOC113545687
XM_034307502.1 mRNA upstream 1670 2097004 ~ 2183053 (+) False LOC113545687
XM_034307490.1 mRNA upstream 1670 2115040 ~ 2183053 (+) True LOC113545687
XM_034307492.1 mRNA upstream 1670 2115040 ~ 2183053 (+) False LOC113545687
XM_034307498.1 mRNA upstream 1670 2115040 ~ 2183053 (+) False LOC113545687
XM_026945107.2 mRNA downstream 11322 2206923 ~ 2217442 (+) False lgals17
XM_026945109.2 mRNA downstream 11332 2206933 ~ 2217442 (+) True lgals17
XM_026945108.2 mRNA downstream 11332 2206933 ~ 2217442 (+) False lgals17
XM_034307655.1 mRNA downstream 31320 2226921 ~ 2239299 (+) True LOC113545586
XM_034307654.1 mRNA downstream 53885 2249486 ~ 2255836 (+) True LOC113545612
TU168470 other upstream 68731 2115040 ~ 2115992 (+) False LOC113545687
TU168103 other upstream 564062 1615178 ~ 1620661 (+) False LOC113523891
TU168100 other upstream 571387 1611511 ~ 1613336 (+) True G142093
TU167713 other upstream 1012379 1129476 ~ 1172344 (+) True G141825
LOC117598126 other upstream 1081460 1102632 ~ 1103263 (+) True LOC117598126
XR_004578666.1 other downstream 74449 2270050 ~ 2271586 (+) True LOC117597926
XR_004578667.1 other downstream 74849 2270450 ~ 2271586 (+) False LOC117597926
XR_004578872.1 other downstream 83478 2279079 ~ 2279887 (+) False LOC117598179
XR_004578868.1 other downstream 92497 2288098 ~ 2288639 (+) False LOC117598174
XR_004578865.1 other downstream 100692 2296293 ~ 2297706 (+) True LOC117598173

Expression Profile