Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034307526.1 |
| length | 1415 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 5 |
| gene id | szl |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047603.1 |
| NCBI id | CM018549.1 |
| chromosome length | 29458963 |
| location | 19449543 ~ 19451833 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0060070 | canonical Wnt signaling pathway | biological_process |
| GO:0008406 | gonad development | biological_process |
| GO:0048263 | determination of dorsal identity | biological_process |
| GO:0030514 | negative regulation of BMP signaling pathway | biological_process |
| GO:0007420 | brain development | biological_process |
| GO:0050821 | protein stabilization | biological_process |
| GO:0001944 | vasculature development | biological_process |
| GO:0009790 | embryo development | biological_process |
| GO:0042995 | cell projection | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0030165 | PDZ domain binding | molecular_function |
| GO:0042813 | Wnt-activated receptor activity | molecular_function |
| GO:0017147 | Wnt-protein binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU179381 | lncRNA | upstream | 25385 | 19423440 ~ 19424158 (+) | True | G151457 |
| TU179374 | lncRNA | upstream | 36091 | 19413235 ~ 19413452 (+) | True | G151450 |
| TU179372 | lncRNA | upstream | 37510 | 19411601 ~ 19412033 (+) | True | G151448 |
| TU179370 | lncRNA | upstream | 42217 | 19406606 ~ 19407326 (+) | True | G151446 |
| TU179371 | lncRNA | upstream | 45145 | 19403972 ~ 19404398 (+) | True | G151447 |
| XR_004578648.1 | lncRNA | downstream | 158905 | 19610738 ~ 19612230 (+) | True | LOC117597885 |
| TU179631 | lncRNA | downstream | 160821 | 19612654 ~ 19612937 (+) | True | G151662 |
| TU179653 | lncRNA | downstream | 277904 | 19729737 ~ 19782913 (+) | True | G151683 |
| TU179652 | lncRNA | downstream | 280871 | 19732704 ~ 19748053 (+) | False | LOC113529760 |
| TU179666 | lncRNA | downstream | 357964 | 19809797 ~ 19815626 (+) | True | G151694 |
| XM_026918692.2 | mRNA | upstream | 3196 | 19431426 ~ 19446347 (+) | True | mov10l1 |
| XM_034307282.1 | mRNA | upstream | 64639 | 19323331 ~ 19384904 (+) | False | srpk2 |
| XM_034307283.1 | mRNA | upstream | 64639 | 19342124 ~ 19384904 (+) | True | srpk2 |
| XM_026918965.2 | mRNA | upstream | 64639 | 19349618 ~ 19384904 (+) | False | srpk2 |
| XM_026918966.2 | mRNA | upstream | 64639 | 19349618 ~ 19384904 (+) | False | srpk2 |
| XM_034307522.1 | mRNA | downstream | 4916 | 19456749 ~ 19464228 (+) | True | dbx2 |
| XM_026919870.2 | mRNA | downstream | 4916 | 19456749 ~ 19464228 (+) | False | dbx2 |
| XM_026919713.2 | mRNA | downstream | 23685 | 19475518 ~ 19542669 (+) | True | nell2a |
| XM_026918779.2 | mRNA | downstream | 140668 | 19592501 ~ 19595962 (+) | True | LOC113529538 |
| XM_026919173.2 | mRNA | downstream | 161379 | 19613212 ~ 19621631 (+) | True | twf1a |
| XR_004578759.1 | other | upstream | 64639 | 19349618 ~ 19384904 (+) | False | srpk2 |
| TU179313 | other | upstream | 185650 | 19260624 ~ 19263893 (+) | True | G151401 |
| TU179056 | other | upstream | 324411 | 19121164 ~ 19125132 (+) | False | faap24 |
| XR_004578793.1 | other | upstream | 371675 | 19076595 ~ 19077868 (+) | True | LOC117598072 |
| TU178953 | other | upstream | 724857 | 18721595 ~ 18724686 (+) | True | urahb |
| TU181223 | other | downstream | 2600781 | 22052614 ~ 22058158 (+) | True | LOC113529593 |
| TU181225 | other | downstream | 2600781 | 22052614 ~ 22058158 (+) | False | LOC113529593 |
| TU181233 | other | downstream | 2625038 | 22076871 ~ 22078453 (+) | False | arpp19b |
| TU181234 | other | downstream | 2625038 | 22076871 ~ 22078453 (+) | False | arpp19b |
| TU181281 | other | downstream | 2764442 | 22216275 ~ 22266382 (+) | True | G153014 |
