RNA id: XM_034307580.1


Basic Information

Item Value
RNA id XM_034307580.1
length 1504
RNA type mRNA
GC content 0.46
exon number 13
gene id chid1
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 19285785 ~ 19292110 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGATGAAGCCTCTCAGTCACTCTGCCTGTTTGACCAGCTAGTCAAGAGTTAAGTGCCCTTTATAGACTACCACTGACATGTTACATTGCTTACTCCGCACTGTTTTTCTGCAgaacaattaaataataatcatagcATATACGCATATAGCAGAGAAGAGCAGAGTGAAATGAGAGCTGTTCTGCTGTTTCTCTACATCTCTACATCAGTCCCTGTTATCAGAGGCACACTCTCAAAAACAGATGCCAAAAAACTCAACAAAGTGCAGGAGGCGGAGacaGCTATTGCGGAGCAGCCGGTGCAGGAGCGGGGTTTGATAGTGACCACTCCCCAGTGGAGGGATGtagtgagagaagagaagagatttTGCCCTCAGACCATATCAACACATCACTTCCAGGGAGCAGTGCTGGGTTACATCACACCGTGGAACTCCCATGGGTATGACATTGCTAAGGTTTTCGGGCCTAAGCTGACCTCTGTGTCTCCGGTATGGCTCCAGCTCAGACGCAAAGGACCAGAAAGCTTTGATATCACCGGCCTGCATGACCATGACCAGGGTTGGGTCAAGGCTGTGAGGAAagccaacaaaaaaaataaaatatTACCTCGGCTATTATTTGATGGCTGGTCTTATCAGGACTACGTGAGCGTCCTGGACAGTGAGGATGAGATTGAGGAGATTGGCAGAGAAATTGTTGAGGTGGCAAAGGCAGAAGGTTTTGATGGCTACACTCTGGAACTGTGGAGTCAGCTGGGAGGAAACAAGAGAAAGGAGCTGATCCACTTGGTTACACACCTGTGCAAGTACCTGAAGGCTGGAAAGCTTACGTGCATCCTTGTCATTCCTCCAGCTATCATCCCTGGGTCAAACCAACCAGGCATGTTTGGAAGGGAAGACTTTGAAAAACTGGCTCCTGTCGTTGATGCATTCAGCTTGATGACTTATGACTATTCCAGTCCGGGCAGACCAGGCCCTAGTTCTCCACTGCCCTGGATGCGAGATTGTGTGCTGCAGCTCGCACCACAGAGCCAGTGGAGATACAAGATCCTGCTGGGTCTCAACCTGTATGGCCTCGACTTCACTGTCAATGGGGGAGCTGAGCCCCTGCTGGGGGGCAGGTACATCGAGCTTCTGAAGGAAGTCAAACCAAAGCTTGTTTGGGATGAGTATGCAGCAGAACACTATTTTACTTACAAAAGAAGTTCAGTGAAGCATACTGTCTATTATCCAACTCTGAAGACTCTCGAACTACGAATTGCACTGGCAACAGAACTGGGTACAGGAATCTCTTTGTGGGAACTTGGACAAGGCTTGGACTATTTCTATGACCTTTTGTGAATTGGGCTGAGACAAACAAACCCACgtggacacacacaaaaaaatgtaattcctTCTTCCAAACACTGATGGGTTATGGTACATTGTTATTTATGACAATGCCACTATTGAGCATgccaataaaattatttttattatataaaaataaaaaggaaaaagcta

Function

GO:

id name namespace
GO:0006032 chitin catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0005576 extracellular region cellular_component
GO:0004568 chitinase activity molecular_function

KEGG:

id description
K17525 CHID1; chitinase domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179305 lncRNA upstream 57893 19226649 ~ 19227893 (+) True G151395
TU179021 lncRNA upstream 174813 19109843 ~ 19110973 (+) True G151134
TU178969 lncRNA upstream 287854 18955049 ~ 18997932 (+) True G151084
TU178978 lncRNA upstream 339844 18945275 ~ 18945942 (+) True G151093
TU178948 lncRNA upstream 489547 18747827 ~ 18796239 (+) False nfat5a
TU179336 lncRNA downstream 25876 19317986 ~ 19393161 (+) True G151417
TU179337 lncRNA downstream 25876 19317986 ~ 19393161 (+) False G151417
TU179341 lncRNA downstream 101764 19393874 ~ 19397489 (+) True G151419
TU179343 lncRNA downstream 106168 19398278 ~ 19400388 (+) True G151421
TU179369 lncRNA downstream 111199 19403309 ~ 19403657 (+) True G151445
XM_034307053.1 mRNA upstream 5204 19269694 ~ 19280582 (+) True thoc5
XM_034307054.1 mRNA upstream 5204 19269809 ~ 19280582 (+) False thoc5
XM_034307056.1 mRNA upstream 5204 19269856 ~ 19280582 (+) False thoc5
XM_034307055.1 mRNA upstream 5204 19269859 ~ 19280582 (+) False thoc5
XM_026919967.2 mRNA upstream 45148 19237672 ~ 19240638 (+) True LOC113530162
XM_034307282.1 mRNA downstream 31221 19323331 ~ 19384904 (+) False srpk2
XM_034307283.1 mRNA downstream 50014 19342124 ~ 19384904 (+) True srpk2
XM_026918965.2 mRNA downstream 57508 19349618 ~ 19384904 (+) False srpk2
XM_026918966.2 mRNA downstream 57508 19349618 ~ 19384904 (+) False srpk2
XM_026918692.2 mRNA downstream 139316 19431426 ~ 19446347 (+) True mov10l1
TU179313 other upstream 21893 19260624 ~ 19263893 (+) True G151401
TU179056 other upstream 160654 19121164 ~ 19125132 (+) False faap24
XR_004578793.1 other upstream 207918 19076595 ~ 19077868 (+) True LOC117598072
TU178953 other upstream 561100 18721595 ~ 18724686 (+) True urahb
XR_004578809.1 other upstream 602358 18675010 ~ 18683428 (+) False rfwd3
XR_004578759.1 other downstream 57508 19349618 ~ 19384904 (+) False srpk2
TU181223 other downstream 2760504 22052614 ~ 22058158 (+) True LOC113529593
TU181225 other downstream 2760504 22052614 ~ 22058158 (+) False LOC113529593
TU181233 other downstream 2784761 22076871 ~ 22078453 (+) False arpp19b
TU181234 other downstream 2784761 22076871 ~ 22078453 (+) False arpp19b

Expression Profile