RNA id: XM_034307643.1


Basic Information

Item Value
RNA id XM_034307643.1
length 979
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC117598106
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2374699 ~ 2383793 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aactggcacaaagacgttaacagcagatcctttaagtcctAAAAGCTGCACACACTGAGGGCACAATGGACGCCATGACCTCCTTTTCTTACATCTACATTGTCACCATCTGTGTGGGCCTCCTCTCTGCAGAACCTGAGATCACTGTATCTGGCCAAGTGGGGTCTACAGCTGTCCTGCCGTGTGAACTGCAGAGTGTAGGCACTGAAACACCGCATATTAGGTGGATCACTGAATCTGAGACTGTGTTTGAGCGATTGGGTGAGGAGAGCTATCAGGCTGAGGGATATAAGGACCATGTGGACGTCCCTGAGGAAGAGCTGTGTAAGGGGAACTGTTCCTTGGTGTTACAGAATCTGACACTTACTGATGCAGGTGTCTACACGAGCTACCAGATAGTGAAACACACCAAGAGATCTGCCTCTGTcaagacaaaaacagaagagaTCAGCCGTGTTAAACTCTCAGTCCAGGGAAACAGAGTCTCCGCGGCACAACTgggaaaaaaattttaaaatttctcaCACAGACTATTTCAACGGCAAGTCAACAACGCCATCATtcaacaacactacacaacaatCAAACGTTGTCTGGGGCAGGAGACAGAGGACGGAACGGCACAACACCCGCGGCGGAGCTTCACGACGCGCACACTACAGAAGCTCTTCCACACTGCTCTGCTTCCCAGCATTCAAACGCTCCCACTCACAGCGCAATCTCCTGCAGCTGGTCCCAATCAAGCGCTGTCAGAAGgagcgagagggagagagagagactgcgcACAATCTGTAGCACGCAAtacaacatataaaacacatgcaaatgcaaataaataaaaaagaataacttACGTCCAGGGACGTAAcagttggaaacaggaaaaatgggcaagcgtaaggattagagagactttgacaacggccaaattgtgatggctagacgactggagtcagagcatctttaaaacagcaggcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168646 lncRNA upstream 2344 2372124 ~ 2372355 (+) True G142429
TU168606 lncRNA upstream 15242 2358799 ~ 2359457 (+) True G142411
TU168603 lncRNA upstream 30594 2335209 ~ 2344105 (+) True LOC117595676
TU168565 lncRNA upstream 72781 2298984 ~ 2301918 (+) True G142385
TU168637 lncRNA downstream 14433 2391344 ~ 2396251 (+) True G142420
TU168651 lncRNA downstream 25012 2401923 ~ 2671465 (+) True G142433
TU168653 lncRNA downstream 41043 2417954 ~ 2434347 (+) True G142435
XR_004578831.1 lncRNA downstream 43063 2419974 ~ 2429915 (+) True LOC117598110
XR_004578832.1 lncRNA downstream 43063 2419974 ~ 2429915 (+) False LOC117598110
XM_034307527.1 mRNA upstream 16706 2353535 ~ 2357993 (+) False LOC117595676
XM_034307544.1 mRNA upstream 71937 2301366 ~ 2302762 (+) True LOC117598085
XM_034307687.1 mRNA upstream 76993 2295159 ~ 2297706 (+) False LOC117598173
XM_034307691.1 mRNA upstream 80183 2293389 ~ 2294516 (+) False LOC117598175
XM_034307638.1 mRNA downstream 21902 2398813 ~ 2406832 (+) False LOC117598105
XM_034307639.1 mRNA downstream 21902 2398813 ~ 2406832 (+) False LOC117598105
XM_034307640.1 mRNA downstream 27271 2404182 ~ 2558727 (+) True LOC117598105
XM_034307641.1 mRNA downstream 34831 2411742 ~ 2558727 (+) False LOC117598105
XM_034307634.1 mRNA downstream 98247 2475158 ~ 2477382 (+) False LOC117598104
TU168604 other upstream 18467 2339449 ~ 2356232 (+) False LOC117595676
XR_004578865.1 other upstream 76993 2296293 ~ 2297706 (+) True LOC117598173
XR_004578867.1 other upstream 76993 2296633 ~ 2297706 (+) False LOC117598173
XR_004578866.1 other upstream 76993 2296959 ~ 2297706 (+) False LOC117598173
XR_004578868.1 other upstream 86060 2288098 ~ 2288639 (+) False LOC117598174
TU168662 other downstream 98293 2475204 ~ 2477958 (+) True LOC117598104
TU168667 other downstream 182900 2559811 ~ 2808637 (+) True LOC117598067
LOC113523831 other downstream 815029 3191940 ~ 3193368 (+) True LOC113523831
LOC117598030 other downstream 820965 3197876 ~ 3199324 (+) True LOC117598030
trnac-gca_1 other downstream 839066 3215977 ~ 3216048 (+) True trnac-gca_1

Expression Profile